BAC Information

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BAC

Clone NameB6Ng01-202H18
Chromosome11 (Build37)
Map Location 39,249,996 - 39,346,583
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202H18.bB6Ng01-202H18.g
ACCGA022965GA022966
length9491,078
definitionB6Ng01-202H18.b B6Ng01-202H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,249,996 - 39,250,636)(39,345,504 - 39,346,583)
sequence
gaattcacaaacagataatcaccaaaattttattatttcttaacttctat
taaagtctttatgaaacaccagcaaagtattttattggcaagatcatatg
tgatattaaaatgttatttaattatattcaagaaaggttatttgtgggca
atgggctacgcacagacagcttggtctccagtcgagctgagatcttgaac
ccagtgaaacccggtggtgatcattttcacctacatgggaagaaaggcct
tccctcatgtctcctggacccctggctcctgttgaagttactgcaaccaa
aacagccctccttccccccctccccccaaggagaggcttgtggctagcag
tcttctacacaatgtcccaagcttctggtcttctggctagactcctcccc
acagttacctagcaacagcaagataacagcccactataaggggcgctgct
tggcccctccttgctctctctctttttttttttcttttccatattttatt
aggtatttagctcatttacatttccaatgctataccaaaagtcccccata
gccacccacccccactcccctacccacccacgccccctttttggccctgg
cattcccctgtattggggcatataaagtttgcgtgtccaatgggcctctc
tttccagtgatggctgactaggccatcttttgatacatatgcagctagag
tcaagagctccggggtactggttagttcatactgttgttccacctatagg
gttgcagatccctttagctccttggctactttctctagctcctccattgg
gagccctgtgatccatccattagctgactgtgagcatccacttctgtgtt
tgctaggccccgggcatagtcttcacaagagacagctacatctgggtcct
ttcgataaaaatctttgctagtgtaatgcaatggtgtcagcgtttggga

gaattcctggtcaaagaacaatcatttcaagtaattttcacttaagaatg
cttcatacttgctggcatacaaatattagtgtctaaagcaaatttgtata
ttctaggtctgcactctcagaattcagaaagttgagacaagagttcatgt
agtcaatgtaggctttgctacacatgagatgttgtctcaaaaaactaaaa
agtaaaaaataaaaattctcatgttgaaatcccaaagttcaataaggtgt
tagcagattgttgatgtttattggataattatgacaaattccttatgaat
ggtagtagagcccttttaaaagagttaacaaagagatctcttgacccccc
ccccaaaaaaaaaataacctaggatactgcaagaagtgccacacagagac
tagcaggccatcactgacactgtatctgtcagttactctatgtagtcttc
agtgttcagaaatccatgccattatagtatctaaatggtctaggatgatg
ttgaagatatctcgaagtctcagagccagtgctgcactgcgtgtctacta
tctatcaccacacctagagcaactagtttatctcaaatgcagaatcctta
aaatcacattcctttactgaagatgtcattcctaaccactacactaacca
gtcacatctctagtgcacttatatttctggcagcctggaatcttttctaa
tagcatcattaaatatatcgcagaaaggggaaagtgctaagtttatcttc
ttatgacatgttcactactgtttagacaaaattgtctacttccaaggcat
cctgcttctcaaagaagtgggtaacttggcttatactttaagcatttaag
agttctggaaatatgataaatcaaataaaataaaacaaaagagaaagccg
aatgtcacttcactattattttaaaaataaatatcgcatttaattaaagg
tttaatttaaagtttactatcttctcattgactctcatctcaatctccat
ttttccactcatctactctcaattattcaacaaatatcctcagtctctta
tgacagtagtgggaatgttcaggtctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39249996_39250636
seq2: B6Ng01-202H18.b_40_680

seq1  GAATTCACAAACAGATAATCACCAAAATTTTATTATTTCTTAACTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACAGATAATCACCAAAATTTTATTATTTCTTAACTTCTAT  50

seq1  TAAAGTCTTTATGAAACACCAGCAAAGTATTTTATTGGCAAGATCATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTTATGAAACACCAGCAAAGTATTTTATTGGCAAGATCATATG  100

seq1  TGATATTAAAATGTTATTTAATTATATTCAAGAAAGGTTATTTGTGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAAAATGTTATTTAATTATATTCAAGAAAGGTTATTTGTGGGCA  150

seq1  ATGGGCTACGCACAGACAGCTTGGTCTCCAGTCGAGCTGAGATCTTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTACGCACAGACAGCTTGGTCTCCAGTCGAGCTGAGATCTTGAAC  200

seq1  CCAGTGAAACCCGGTGGTGATCATTTTCACCTACATGGGAAGAAAGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAACCCGGTGGTGATCATTTTCACCTACATGGGAAGAAAGGCCT  250

seq1  TCCCTCATGTCTCCTGGACCCCTGGCTCCTGTTGAAGTTACTGCAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATGTCTCCTGGACCCCTGGCTCCTGTTGAAGTTACTGCAACCAA  300

seq1  AACAGCCCTCCTTCCCCCCCTCCCCCCAAGGAGAGGCTTGTGGCTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCTCCTTCCCCCCCTCCCCCCAAGGAGAGGCTTGTGGCTAGCAG  350

seq1  TCTTCTACACAATGTCCCAAGCTTCTGGTCTTCTGGCTAGACTCCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACACAATGTCCCAAGCTTCTGGTCTTCTGGCTAGACTCCTCCCC  400

seq1  ACAGTTACCTAGCAACAGCAAGATAACAGCCCACTATAAGGGGCGCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACCTAGCAACAGCAAGATAACAGCCCACTATAAGGGGCGCTGCT  450

seq1  TGGCCCCTCCTTGCTCTCTCTCTTTTTTTTTTTCTTTTCCATATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCTTGCTCTCTCTCTTTTTTTTTTTCTTTTCCATATTTTATT  500

seq1  AGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATA  550

seq1  GCCACCCACCCCCACTCCCCTACCCACCCACGCCCCCTTTTTGGCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCACCCCCACTCCCCTACCCACCCACGCCCCCTTTTTGGCCCTGG  600

seq1  CATTCCCCTGTATTGGGGCATATAAAGTTTGCGTGTCCAAT  641
      |||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCTGTATTGGGGCATATAAAGTTTGCGTGTCCAAT  641


seq1: chr11_39345504_39346583
seq2: B6Ng01-202H18.g_62_1139 (reverse)

seq1  TTAGACCTGAACATTCCCACTACTGTCATAAGAGACTGAGGAATATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAGACCTGAACATTCCCACTACTGTCATAAGAGACTGAGG-ATATTTGT  49

seq1  TGAATAATTGAGAGTAGATGAGTGGAAAAATGGAGATTGAGATGAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTGAGAGTAGATGAGTGGAAAAATGGAGATTGAGATGAGAGTC  99

seq1  AATGAGAAGATAGTAAAACTTTAATTTAAACCTTAATTTAAATGCGATAT  150
      |||||||||||||| ||||||||| ||||||||| | |||||||||||||
seq2  AATGAGAAGATAGT-AAACTTTAAATTAAACCTTTAATTAAATGCGATAT  148

seq1  TTATTTTTAAAAT-ATAGTGAAGTGACATTCGGCTTTCTCTTTTGTTTTA  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAAATAATAGTGAAGTGACATTCGGCTTTCTCTTTTGTTTTA  198

seq1  TTTTATTTTGATTTATCATATTTCCAGAACTCTTAAATGCTTAAAGTATA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTA-TTTGATTTATCATATTTCCAGAACTCTTAAATGCTTAAAGTATA  247

seq1  AGCCAAGTTACCCACTTCTTTGAGAAGCAGGATGCCTTGGAAGTAGACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTTACCCACTTCTTTGAGAAGCAGGATGCCTTGGAAGTAGACAA  297

seq1  TTTTGTCTAAACAGTAGTGAACATGTCATAAGAAGATAAACTTAGCACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTAAACAGTAGTGAACATGTCATAAGAAGATAAACTTAGCACTT  347

seq1  TCCCCTTTCTGCGATATATTTAATGATGCTATTAGAAAAGATTCCAGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTCTGCGATATATTTAATGATGCTATTAGAAAAGATTCCAGGCT  397

seq1  GCCAGAAATATAAGTGCACTAGAGATGTGACTGGTTAGTGTAGTGGTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAATATAAGTGCACTAGAGATGTGACTGGTTAGTGTAGTGGTTAG  447

seq1  GAATGACATCTTCAGTAAAGGAATGTGATTTTAAGGATTCTGCATTTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACATCTTCAGTAAAGGAATGTGATTTTAAGGATTCTGCATTTGAG  497

seq1  ATAAACTAGTTGCTCTAGGTGTGGTGATAGATAGTAGACACGCAGTGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAGTTGCTCTAGGTGTGGTGATAGATAGTAGACACGCAGTGCAG  547

seq1  CACTGGCTCTGAGACTTCGAGATATCTTCAACATCATCCTAGACCATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTCTGAGACTTCGAGATATCTTCAACATCATCCTAGACCATTTA  597

seq1  GATACTATAATGGCATGGATTTCTGAACACTGAAGACTACATAGAGTAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATAATGGCATGGATTTCTGAACACTGAAGACTACATAGAGTAAC  647

seq1  TGACAGATACAGTGTCAGTGATGGCCTGCTAGTCTCTGTGTGGCACTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATACAGTGTCAGTGATGGCCTGCTAGTCTCTGTGTGGCACTTCT  697

seq1  TGCAGTATCCTAGGTTATTTTTTTTTTGGGGGGGGGGTCAAGAGATCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATCCTAGGTTATTTTTTTTTTGGGGGGGGGGTCAAGAGATCTCT  747

seq1  TTGTTAACTCTTTTAAAAGGGCTCTACTACCATTCATAAGGAATTTGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACTCTTTTAAAAGGGCTCTACTACCATTCATAAGGAATTTGTCA  797

seq1  TAATTATCCAATAAACATCAACAATCTGCTAACACCTTATTGAACTTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCCAATAAACATCAACAATCTGCTAACACCTTATTGAACTTTGG  847

seq1  GATTTCAACATGAGAATTTTTATTTTTTACTTTTTAGTTTTTTGAGACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAACATGAGAATTTTTATTTTTTACTTTTTAGTTTTTTGAGACAA  897

seq1  CATCTCATGTGTAGCAAAGCCTACATTGACTACATGAACTCTTGTCTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGTGTAGCAAAGCCTACATTGACTACATGAACTCTTGTCTCAA  947

seq1  CTTTCTGAATTCTGAGAGTGCAGACCTAGAATATACAAATTTGCTTTAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAATTCTGAGAGTGCAGACCTAGAATATACAAATTTGCTTTAGA  997

seq1  CACTAATATTTGTATGCCAGCAAGTATGAAGCATTCTTAAGTGAAAATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATATTTGTATGCCAGCAAGTATGAAGCATTCTTAAGTGAAAATTA  1047

seq1  CTTGAAATGATTGTTCTTTGACCAGGAATTC  1080
      |||||||||||||||||||||||||||||||
seq2  CTTGAAATGATTGTTCTTTGACCAGGAATTC  1078


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