BAC Information

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BAC

Clone NameB6Ng01-202I08
Chromosome11 (Build37)
Map Location 39,166,214 - 39,346,583
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202I08.bB6Ng01-202I08.g
ACCGA022993GA022994
length7581,067
definitionB6Ng01-202I08.b B6Ng01-202I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,166,214 - 39,166,967)(39,345,513 - 39,346,583)
sequence
gaattctcattataacccagggctttctttttttagattttatttattta
tttttgacttattcagttttcatctgctcactgccccctctaccaggcat
cccttcccacaattctccccccacccctccacttctggtctgagtaggtg
tgcccacccgccccaaatctgaacccagagatttctaaagaagatcagcc
atgcctagaacctccaagttagtaaattacagttggcatgtggacataat
tactgttttatctaattgttgttattaccattaattcttctattatgact
tctgtgtatgcatgtatagtgaatttgtgcacatgcaaattctctctctc
tctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtg
tgtgtgtgtagaaagcaggggtaaattttgtatttcatatgtgttctaag
ttacccctctcttttggtgacaggttctttcactgaaacttgagctcaaa
acagctttatcaagaactgacaccattttttaccagcaggacagtcatta
ctgaagcaagtggctgtacttcatccactatagtatcattttttaataat
tgccagccagctctggaatagacacaattgtttagtttatatcacagaaa
gtggtggacagtggagagtcagcctgctaagcctttcagaaaaattcaga
gaacatactggaaaagatataatgatggtttaagatgaggcctcaaaagc
tgaaatgt
gaattcctggtcaaagaacaatcatttcaagtaattttcacttaagaatg
cttcatacttgctggcatacaaatattagtgtctaaagcaaatttgtata
ttctaggtctgcactctcagaattcagaaagttgagacaagagttcatgt
agtcaatgtaggctttgctacacatgagatgttgtctcaaaaaactaaaa
agtaaaaaataaaaattctcatgttgaaatcccaaagttcaataaggtgt
tagcagattgttgatgtttattggataattatgacaaattccttatgaat
ggtagtagagcccttttaaaagagttaacaaagagatctcttgacccccc
ccccaaaaaaaaaataacctaggatactgcaagaagtgccacacagagac
tagcaggccatcactgacactgtatctgtcagttactctatgtagtcttc
agtgttcagaaatccatgccattatagtatctaaatggtctaggatgatg
ttgaagatatctcgaagtctcagagccagtgctgcactgcgtgtctacta
tctatcaccacacctagagcaactagtttatctcaaatgcagaatcctta
aaatcacattcctttactgaagatgtcattcctaaccactacactaacca
gtcacatctctagtgcacttatatttctggcagcctggaatcttttctaa
tagcatcattaaatatatcgcagaaaggggaaagtgctaagtttatcttc
ttatgacatgttcactactgtttagacaaaattgtctacttccaaggcat
cctgcttctcaaagaagtgggtaacttggcttatactttaagcatttaag
agttctgggaaatatgataatcaaaataaaataaaacaaaagagaaagcc
gaatgtcacttcactatatttttaaaaataaatatcgcatttaattaagg
tttaaattaaagttttactatcttctcattgactctcatctcatctccat
ttttcactcatctactctcattatccaacaaaatatctcagtctcttatg
acaggtagtgggatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39166214_39166967
seq2: B6Ng01-202I08.b_44_801

seq1  GAATTCTCATTATAACCCAGGGCTTTCTTTTTTTAGATTTTATTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTATAACCCAGGGCTTTCTTTTTTTAGATTTTATTTATTTA  50

seq1  TTTTTGACTTATTCAGTTTTCATCTGCTCACTGCCCCCTCTACCAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTTATTCAGTTTTCATCTGCTCACTGCCCCCTCTACCAGGCAT  100

seq1  CCCTTCCCACAATTCTCCCCCCACCCCTCCACTTCTGGTCTGAGTAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCACAATTCTCCCCCCACCCCTCCACTTCTGGTCTGAGTAGGTG  150

seq1  TGCCCACCCGCCCCAAATCTGAACCCAGAGATTTCTAAAGAAGATCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCCGCCCCAAATCTGAACCCAGAGATTTCTAAAGAAGATCAGCC  200

seq1  ATGCCTAGAACCTCCAAGTTAGTAAATTACAGTTGGCATGTGGACATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGAACCTCCAAGTTAGTAAATTACAGTTGGCATGTGGACATAAT  250

seq1  TACTGTTTTATCTAATTGTTGTTATTACCATTAATTCTTCTATTATGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTATCTAATTGTTGTTATTACCATTAATTCTTCTATTATGACT  300

seq1  TCTGTGTATGCATGTATAGTGAATTTGTGCACATGCAAATTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATGCATGTATAGTGAATTTGTGCACATGCAAATTCTCTCTCTC  350

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTG  400

seq1  TGTGTGTGTAGAAAGCAGGGGTAAATTTTGTATTTCATATGTGTTCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAGAAAGCAGGGGTAAATTTTGTATTTCATATGTGTTCTAAG  450

seq1  TTACCCCTCTCTTTTGGTGACAGGTTCTTTCACTGAAACTTGAGCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTCTCTTTTGGTGACAGGTTCTTTCACTGAAACTTGAGCTCAAA  500

seq1  ACAGCTTTATCAAGAACTGACACCATTTTTTACCAGCAGGACAGTCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTATCAAGAACTGACACCATTTTTTACCAGCAGGACAGTCATTA  550

seq1  CTGAAGCAAGTGGCTGTACTTCATCCACTATAGTATCA-TTTTTAATAAT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGAAGCAAGTGGCTGTACTTCATCCACTATAGTATCATTTTTTAATAAT  600

seq1  TGCCAGCCAGCTCTGGAATAGACACAA-TGTTTAG-TTATATCACAGAAA  647
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TGCCAGCCAGCTCTGGAATAGACACAATTGTTTAGTTTATATCACAGAAA  650

seq1  GTGGTGGACAGTGGAGAGTCAGCCTGCTAAGCCTTTCAGAAAAATTCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGACAGTGGAGAGTCAGCCTGCTAAGCCTTTCAGAAAAATTCAGA  700

seq1  GAACATACTGGAAAAGATATAATGATGGTTTAAGATGAGGCCTC-AAAGC  746
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAACATACTGGAAAAGATATAATGATGGTTTAAGATGAGGCCTCAAAAGC  750

seq1  TGAAATGT  754
      ||||||||
seq2  TGAAATGT  758

seq1: chr11_39345513_39346583
seq2: B6Ng01-202I08.g_62_1128 (reverse)

seq1  AACATTCCCACTA-CTGTCATAAGAGACTGAGGAATATTTGTTGAATAAT  49
      |||| |||||||| ||||||||||||||||||  || ||||||| |||| 
seq2  AACA-TCCCACTACCTGTCATAAGAGACTGAGATAT-TTTGTTGGATAA-  47

seq1  TGAGAGTAGATGAGTGGAAAAATGGAGATTGAGATGAGAGTCAATGAGAA  99
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TGAGAGTAGATGAGT-GAAAAATGGAGA-TGAGATGAGAGTCAATGAGAA  95

seq1  GATAGTAAAACTTTAATTTAAACCTTAATTTAAATGCGATATTTATTTTT  149
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATAGTAAAACTTTAATTTAAACCTTAA-TTAAATGCGATATTTATTTTT  144

seq1  -AAAATATAGTGAAGTGACATTCGGCTTTCTCTTTTGTTTTATTTTATTT  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAGTGAAGTGACATTCGGCTTTCTCTTTTGTTTTATTTTATTT  194

seq1  TGATTTATCATATTT-CCAGAACTCTTAAATGCTTAAAGTATAAGCCAAG  247
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGA-TTATCATATTTCCCAGAACTCTTAAATGCTTAAAGTATAAGCCAAG  243

seq1  TTACCCACTTCTTTGAGAAGCAGGATGCCTTGGAAGTAGACAATTTTGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTTCTTTGAGAAGCAGGATGCCTTGGAAGTAGACAATTTTGTC  293

seq1  TAAACAGTAGTGAACATGTCATAAGAAGATAAACTTAGCACTTTCCCCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAGTGAACATGTCATAAGAAGATAAACTTAGCACTTTCCCCTT  343

seq1  TCTGCGATATATTTAATGATGCTATTAGAAAAGATTCCAGGCTGCCAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGATATATTTAATGATGCTATTAGAAAAGATTCCAGGCTGCCAGAA  393

seq1  ATATAAGTGCACTAGAGATGTGACTGGTTAGTGTAGTGGTTAGGAATGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTGCACTAGAGATGTGACTGGTTAGTGTAGTGGTTAGGAATGAC  443

seq1  ATCTTCAGTAAAGGAATGTGATTTTAAGGATTCTGCATTTGAGATAAACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTAAAGGAATGTGATTTTAAGGATTCTGCATTTGAGATAAACT  493

seq1  AGTTGCTCTAGGTGTGGTGATAGATAGTAGACACGCAGTGCAGCACTGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTCTAGGTGTGGTGATAGATAGTAGACACGCAGTGCAGCACTGGC  543

seq1  TCTGAGACTTCGAGATATCTTCAACATCATCCTAGACCATTTAGATACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACTTCGAGATATCTTCAACATCATCCTAGACCATTTAGATACTA  593

seq1  TAATGGCATGGATTTCTGAACACTGAAGACTACATAGAGTAACTGACAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCATGGATTTCTGAACACTGAAGACTACATAGAGTAACTGACAGA  643

seq1  TACAGTGTCAGTGATGGCCTGCTAGTCTCTGTGTGGCACTTCTTGCAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTCAGTGATGGCCTGCTAGTCTCTGTGTGGCACTTCTTGCAGTA  693

seq1  TCCTAGGTTATTTTTTTTTTGGGGGGGGGGTCAAGAGATCTCTTTGTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTTATTTTTTTTTTGGGGGGGGGGTCAAGAGATCTCTTTGTTAA  743

seq1  CTCTTTTAAAAGGGCTCTACTACCATTCATAAGGAATTTGTCATAATTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAAAAGGGCTCTACTACCATTCATAAGGAATTTGTCATAATTAT  793

seq1  CCAATAAACATCAACAATCTGCTAACACCTTATTGAACTTTGGGATTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAACATCAACAATCTGCTAACACCTTATTGAACTTTGGGATTTCA  843

seq1  ACATGAGAATTTTTATTTTTTACTTTTTAGTTTTTTGAGACAACATCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAATTTTTATTTTTTACTTTTTAGTTTTTTGAGACAACATCTCA  893

seq1  TGTGTAGCAAAGCCTACATTGACTACATGAACTCTTGTCTCAACTTTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCAAAGCCTACATTGACTACATGAACTCTTGTCTCAACTTTCTG  943

seq1  AATTCTGAGAGTGCAGACCTAGAATATACAAATTTGCTTTAGACACTAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGAGTGCAGACCTAGAATATACAAATTTGCTTTAGACACTAAT  993

seq1  ATTTGTATGCCAGCAAGTATGAAGCATTCTTAAGTGAAAATTACTTGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATGCCAGCAAGTATGAAGCATTCTTAAGTGAAAATTACTTGAAA  1043

seq1  TGATTGTTCTTTGACCAGGAATTC  1071
      ||||||||||||||||||||||||
seq2  TGATTGTTCTTTGACCAGGAATTC  1067