BAC Information

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BAC

Clone NameB6Ng01-203J19
Chromosome11 (Build37)
Map Location 61,531,154 - 61,660,202
singlet/doubletdoublet
Overlap geneSlc5a10, Prpsap2, Ulk2
Upstream geneFlii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, 2310040C09Rik
Downstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203J19.bB6Ng01-203J19.g
ACCGA023779GA023780
length1,127993
definitionB6Ng01-203J19.b B6Ng01-203J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,659,070 - 61,660,202)(61,531,154 - 61,532,134)
sequence
gaattccagtcctctgcaagaacaagtgcttctaaccactgagctttctc
tccagcccatgatctttactttaaggacagctcataagcaggagagtaaa
attatgtctttctttcaaacataaatcttgagtaatctgagcctgctata
ggtagagtaccctttaccctcataatcaactcttgataattttatcataa
caagaacaaaatgcattatttaatagatggtgtaggcaaaactgaaaata
caaagctgaaaaataccatttacattctttttttttaattaccaggtaaa
ttaaaagcatcaaaaaatgtatagcaataacataattgaggaatctcagt
agttgaaaacatgaagccatattctgctactacaggcatgtttttgtgac
ttttgaaaacaagcagagagagtgaagtggggaaacttggaaggactgtc
agcgaatgttacacgtgttgatctgaatgtgcacgtttgttataattaat
tgaactgtatggttaaataagactgttaaaatatagaaagtatatgtatt
aaatgcaaaagagggtggttggcatttatagtttgaaaaaatacttatta
tacaaaagtaaatttctatttactaagttacccaggctatgattggttgt
tatagtagccaggaataacctaagagctccgaatgtaaggaacctagatt
agagtattgctttttacagcaaactcatttaagatcttgtccatgtgaac
actattacccttgtcactcactataatgggcatgatggatactctgagat
ggtaaccccaaggggagtaacacgaaggattataggcatgacatcattct
tcttctttctgtgagacagtctatagaaaggtgccgcaggttggggaatg
aattaagaaatgtcgcagagccagatgtagtggtatacatcttttaattg
caacactggaaggcagaagcaagtggatttcctaggagtttgagaccaca
tagatccagacagccattgctgtgtagggtgacccttgtctcaagacaac
atgttacagagaactgtaagattgggtttagaaccacaagattttcttta
tcttgttagtaatgctctggctgcttc
gaattctcctacttgcctcccatttccttgccatggaagcactggtctca
tgggtacatgggttgaacaggttctgttttttgttgtttgtttgttttgt
tttgtttttgactcagagtttctctgggtagccctggatgtcctggaact
cactctgtagaccaagctggccttgaactcaagagatctgcctgcctctg
tttccagagtgctgatctcaaaggtgtgcaccaccactgccaggccgggt
tctgggtgtttgaacccaggtcctcatgttctttacctaccaagctatct
tccagcctgtccctagaaggctgctgagggcaactgctaggggctgcagg
aggctctgcaggaggtgggctttgctggctcaaggcaaggctggatgagt
ttgatctcgccagaaagagactgctttccctgcatgcctcagctcactag
agtcacatcgactctcagtcaggagcagttccttgtgtctatagttttcc
ccacggagcttaatcatttctagcctttgattcggagcaagaaattggca
gctcttgtgttctctggaacactaacaggccatggtgggctactaatcag
cctcatttcagccctgtgtctcaggaaatagggaggcctgacaggaggag
aggcaccaggaacgtccctgcagtggacagagggaacacaagctccctgt
catatatggacatggcctgtccatataatttagtatatttgataatatag
aaggttacagatagtatattattgataagaaaattagaagtattatgaga
attagtaaaatgtgacagagggttatagcatgtggtttggtaaatgccct
tcaaaggacaggggctgtttaaatattcacttttgttaaatacacacacc
tcacacacacacaaacatcactccctcacacactcacacacactcagcac
ttccacatataccacatactacaccacacacaccacctccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61659070_61660202
seq2: B6Ng01-203J19.b_48_1174 (reverse)

seq1  GAAGCAGCAGAAGCCAATTTACTAACAAAGATTAAAAGAAAATCTTGTGG  50
      ||||||||   |||    |||||||| |||||  ||||||||||||||||
seq2  GAAGCAGCCAGAGC---ATTACTAAC-AAGAT--AAAGAAAATCTTGTGG  44

seq1  TTCCTAAAACCCAATCTTCCAGTTTCTCTGTAACATGTTTGTCTTGAGAC  100
      |||   |||||||||||| ||| |||||||||||||| ||||||||||||
seq2  TTC--TAAACCCAATCTTACAG-TTCTCTGTAACATG-TTGTCTTGAGAC  90

seq1  -AGGGTCACCCTACACAGCAATGGCTGTCCTGGATCTATGTGGTCTCAAA  149
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGGTCACCCTACACAGCAATGGCTGT-CTGGATCTATGTGGTCTCAAA  139

seq1  CTCCTA-GAAATCCACTTGCTTCTGCC-TCCAGTGTTGCAATT-AAAGAT  196
      |||||| |||||||||||||||||||| ||||||||||||||| ||||||
seq2  CTCCTAGGAAATCCACTTGCTTCTGCCTTCCAGTGTTGCAATTAAAAGAT  189

seq1  GTATACCACTACATCTGGCTCTGCGACATTTCTTAATTCATTCCCCAACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCACTACATCTGGCTCTGCGACATTTCTTAATTCATTCCCCAACC  239

seq1  TGCGGCACC-TTCTATAGACTGTCTCACAGAAAGAAGAAGAATGATGTCA  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCACCTTTCTATAGACTGTCTCACAGAAAGAAGAAGAATGATGTCA  289

seq1  TGCCTATAATCCTTCGTGTTACTCCCCTTGGGGTTACCATCTCAGAGTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAATCCTTCGTGTTACTCCCCTTGGGGTTACCATCTCAGAGTAT  339

seq1  CCATCATGCCCATTATAGTGAGTGACAAGGGTAATAGTGTTCACATGGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGCCCATTATAGTGAGTGACAAGGGTAATAGTGTTCACATGGAC  389

seq1  AAGATCTTAAATGAGTTTGCTGTAAAAAGCAATACTCTAATCTAGGTTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTAAATGAGTTTGCTGTAAAAAGCAATACTCTAATCTAGGTTCC  439

seq1  TTACATTCGGAGCTCTTAGGTTATTCCTGGCTACTATAACAACCAATCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCGGAGCTCTTAGGTTATTCCTGGCTACTATAACAACCAATCAT  489

seq1  AGCCTGGGTAACTTAGTAAATAGAAATTTACTTTTGTATAATAAGTATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGTAACTTAGTAAATAGAAATTTACTTTTGTATAATAAGTATTT  539

seq1  TTTCAAACTATAAATGCCAACCACCCTCTTTTGCATTTAATACATATACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTATAAATGCCAACCACCCTCTTTTGCATTTAATACATATACT  589

seq1  TTCTATATTTTAACAGTCTTATTTAACCATACAGTTCAATTAATTATAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATTTTAACAGTCTTATTTAACCATACAGTTCAATTAATTATAAC  639

seq1  AAACGTGCACATTCAGATCAACACGTGTAACATTCGCTGACAGTCCTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGCACATTCAGATCAACACGTGTAACATTCGCTGACAGTCCTTCC  689

seq1  AAGTTTCCCCACTTCACTCTCTCTGCTTGTTTTCAAAAGTCACAAAAACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCCCACTTCACTCTCTCTGCTTGTTTTCAAAAGTCACAAAAACA  739

seq1  TGCCTGTAGTAGCAGAATATGGCTTCATGTTTTCAACTACTGAGATTCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAGTAGCAGAATATGGCTTCATGTTTTCAACTACTGAGATTCCT  789

seq1  CAATTATGTTATTGCTATACATTTTTTGATGCTTTTAATTTACCTGGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGTTATTGCTATACATTTTTTGATGCTTTTAATTTACCTGGTAA  839

seq1  TTAAAAAAAAAGAATGTAAATGGTATTTTTCAGCTTTGTATTTTCAGTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAGAATGTAAATGGTATTTTTCAGCTTTGTATTTTCAGTTT  889

seq1  TGCCTACACCATCTATTAAATAATGCATTTTGTTCTTGTTATGATAAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACACCATCTATTAAATAATGCATTTTGTTCTTGTTATGATAAAAT  939

seq1  TATCAAGAGTTGATTATGAGGGTAAAGGGTACTCTACCTATAGCAGGCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGAGTTGATTATGAGGGTAAAGGGTACTCTACCTATAGCAGGCTC  989

seq1  AGATTACTCAAGATTTATGTTTGAAAGAAAGACATAATTTTACTCTCCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTCAAGATTTATGTTTGAAAGAAAGACATAATTTTACTCTCCTG  1039

seq1  CTTATGAGCTGTCCTTAAAGTAAAGATCATGGGCTGGAGAGAAAGCTCAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGCTGTCCTTAAAGTAAAGATCATGGGCTGGAGAGAAAGCTCAG  1089

seq1  TGGTTAGAAGCACTTGTTCTTGCAGAGGACTGGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAAGCACTTGTTCTTGCAGAGGACTGGAATTC  1127

seq1: chr11_61531154_61532134
seq2: B6Ng01-203J19.g_65_1057

seq1  GAATTCTCCTACTTGCCTCCCATTTCCTTGCCATGGAAGCACTGGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTACTTGCCTCCCATTTCCTTGCCATGGAAGCACTGGTCTCA  50

seq1  TGGGTACATGGGTTGAACAGGTTCTGTTTTTTGTTGTTTGTTTGTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACATGGGTTGAACAGGTTCTGTTTTTTGTTGTTTGTTTGTTTTGT  100

seq1  TTTGTTTTTGACTCAGAGTTTCTCTGGGTAGCCCTGGATGTCCTGGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGACTCAGAGTTTCTCTGGGTAGCCCTGGATGTCCTGGAACT  150

seq1  CACTCTGTAGACCAAGCTGGCCTTGAACTCAAGAGATCTGCCTGCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGACCAAGCTGGCCTTGAACTCAAGAGATCTGCCTGCCTCTG  200

seq1  TTTCCAGAGTGCTGATCTCAAAGGTGTGCACCACCACTGCCAGGCCGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGTGCTGATCTCAAAGGTGTGCACCACCACTGCCAGGCCGGGT  250

seq1  TCTGGGTGTTTGAACCCAGGTCCTCATGTTCTTTACCTACCAAGCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGTTTGAACCCAGGTCCTCATGTTCTTTACCTACCAAGCTATCT  300

seq1  TCCAGCCTGTCCCTAGAAGGCTGCTGAGGGCAACTGCTAGGGGCTGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTGTCCCTAGAAGGCTGCTGAGGGCAACTGCTAGGGGCTGCAGG  350

seq1  AGGCTCTGCAGGAGGTGGGCTTTGCTGGCTCAAGGCAAGGCTGGATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGCAGGAGGTGGGCTTTGCTGGCTCAAGGCAAGGCTGGATGAGT  400

seq1  TTGATCTCGCCAGAAAGAGACTGCTTTCCCTGCATGCCTCAGCTCACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCGCCAGAAAGAGACTGCTTTCCCTGCATGCCTCAGCTCACTAG  450

seq1  AGTCACATCGACTCTCAGTCAGGAGCAGTTCCTTGTGTCTATAGTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATCGACTCTCAGTCAGGAGCAGTTCCTTGTGTCTATAGTTTTCC  500

seq1  CCACGGAGCTTAATCATTTCTAGCCTTTGATTCGGAGCAAGAAATTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGCTTAATCATTTCTAGCCTTTGATTCGGAGCAAGAAATTGGCA  550

seq1  GCTCTTGTGTTCTCTGGAACACTAACAGGCCATGGTGGGCTACTAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTGTTCTCTGGAACACTAACAGGCCATGGTGGGCTACTAATCAG  600

seq1  CCTCATTTCAGCCCTGTGTCTCAGGAAATAGGGAGGCCTGACAGGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCAGCCCTGTGTCTCAGGAAATAGGGAGGCCTGACAGGAGGAG  650

seq1  AGGCACCAGGAACGTCCCTGCAGTGGACAGAGGGAACACAAGCTCCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAGGAACGTCCCTGCAGTGGACAGAGGGAACACAAGCTCCCTGT  700

seq1  CATATATGGACATGGCCTGTCCATATAATTTAGTATA-TTGATAATATAG  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATATATGGACATGGCCTGTCCATATAATTTAGTATATTTGATAATATAG  750

seq1  AAGGTTACAGATAGTATATTATTGATAAGAAAATTAGAAGTATTATGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTACAGATAGTATATTATTGATAAGAAAATTAGAAGTATTATGAGA  800

seq1  ATTAGTAAAATGTGACAGAGGGTTATAGCATGTGG-TTGGTAAATG-CCA  847
      ||||||||||||||||||||||||||||||||||| |||||||||| || 
seq2  ATTAGTAAAATGTGACAGAGGGTTATAGCATGTGGTTTGGTAAATGCCCT  850

seq1  TCAAA-GACA-GGGCTG-TTAAATA-TCAC-TTTGTAAAATACACACA-C  891
      ||||| |||| |||||| ||||||| |||| ||||| ||||||||||| |
seq2  TCAAAGGACAGGGGCTGTTTAAATATTCACTTTTGTTAAATACACACACC  900

seq1  ACACACACACACAAACA-CACACACACACACACACACACACACACAGCAC  940
       |||||||||||||||| ||| | | ||||||| ||||||||| ||||||
seq2  TCACACACACACAAACATCACTCCCTCACACACTCACACACACTCAGCAC  950

seq1  -TCCACATATACCACATACTACACCACACACACCA-CTCCACA  981
       |||||||||||||||||||||||||||||||||| |||||||
seq2  TTCCACATATACCACATACTACACCACACACACCACCTCCACA  993