BAC Information

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BAC

Clone NameB6Ng01-204A14
Chromosome11 (Build37)
Map Location 101,595,547 - 101,675,279
singlet/doubletdoublet
Overlap geneDhx8, Etv4
Upstream geneRab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Downstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204A14.bB6Ng01-204A14.g
ACCGA024090GA024091
length1,083570
definitionB6Ng01-204A14.b B6Ng01-204A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,674,202 - 101,675,279)(101,595,547 - 101,596,120)
sequence
gaattccagtctaaatagtgaaagcccgtcccataaaaagcaggaaaaga
aagggctgggggcatagctcagttggcagagtgcttactagcctgaagga
agccctggctttgtaccccagcactgcgaaagcatagcagtgctttcctg
taattctcaaatttggaggtggaggccggaggatgcatgagacacagggg
ggagagagagactgagagacagagagacagagagacagagagacagagag
acagagagacagagctgatatggaaaccgttccttgagtgcctgaggtta
gggatgttaaggtagagagctctgctatcaacacgctgtgatcttgggca
gagatcttccccatctctggctgcccatcttctgaggtgaagacacgtgg
gattagatggtctattaaggtatctccattctaaataaaagttgaaactg
gaataaaactcttcctattccggcctggcagctgctagagaagcagtgtg
cttgccaacactgccacctggtggcggcaacactccactacaggggagac
ttctgggtcgagtgggcgttcacttctcctccaccagctaagtgactcta
ggtttttattgttgttaattacattattaaatttttatcttatcttaatt
atatatgtttgcgtgtgggtatgtgcacatacatgcaggtgcctgtagag
gctagagccatcagatgccctggagctggagacgggtagctatgagcctc
ccagtgggaaggagagagacggcctaggaattctatccaaatcctgtagg
cagagtctaaaaacttgctctgcaagagtagtatacacccatcactgagc
catctctgcagccctgtttttgctttcttttggttttgtttaaaccgctc
tctgactggtgttgtagctcagtggaagagtggggacttcggtatgttgg
agctctggaccctggattcaacaccaccactttcccaaagaaagtgttta
cagttttacagcaagggtgttctattttttgccaaataaatatttatatc
tgcgactggttgagatgacttcagtgagtaaag
acagtatgtatatctgaagattctttgtttcctttttgtttctttggtgt
tgctactgaatttaaattttgatcgcactaaaggatttttaagtaggaag
gagcgatttgtgcatatcaagtaaataagccatcaaatgtgtaaagttgc
gttgctggccagggagccagattccttccccactgtcctaggagaatgcc
gcaggacttccggcagtaagtctgaggatgctgacattcttttgttgttg
ttgttggtttgtttgtttttaattttttattagatattttcttcacttac
attttttaaagatttatttatcttatttatgtgagtacactgtagctgtc
ttcagacactcaccataagagggcatcagatcccattacagatggttatg
agccaccatgtgttgtttgctgggaattgaactcgggacctctggaaggg
catttggtgctcttaacccctgagccatctctccagcccctgatgttgac
attctttgttctgtgaatcaggacgtcagggacaagtcgggcagttgtgg
ccctcacctttaatcccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101674202_101675279
seq2: B6Ng01-204A14.b_46_1128 (reverse)

seq1  CTTTACTCACTG-AGTCATCTC-ACCAGCCCAAGATATAATATTTTATTT  48
      |||||||||||| ||||||||| ||||| |  ||||||||   |||||||
seq2  CTTTACTCACTGAAGTCATCTCAACCAGTCGCAGATATAAATATTTATTT  50

seq1  G--CAAAAATAG-ACACCCTGTGCTGT-AAACTGTTAACACTTTCTTTGG  94
      |   |||||||| ||||||| |||||| ||||||| ||||||||||||||
seq2  GGCAAAAAATAGAACACCCT-TGCTGTAAAACTGTAAACACTTTCTTTGG  99

seq1  G-AAGTGGTGGTGTTGAATCCAGGGTCCAGAGCCTCAAACATACCGAGGT  143
      | |||||||||||||||||||||||||||||| ||| |||||||||| ||
seq2  GAAAGTGGTGGTGTTGAATCCAGGGTCCAGAG-CTCCAACATACCGAAGT  148

seq1  CCCCACTCTTCCACTGAGCTACAACACCAGTCAGAGAGCGGTTTAAAACA  193
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCCACTCTTCCACTGAGCTACAACACCAGTCAGAGAGCGGTTT-AAACA  197

seq1  AAACCAAAAGAAAGCAAAAACAGGGCTGCAGAGATGGCTCAGTGATGGGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAGAAAGCAAAAACAGGGCTGCAGAGATGGCTCAGTGATGGGT  247

seq1  GTATACTACTCTTGCAGAGC-AGTTTTTAGACTCTGCCTACAGGATTTGG  292
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTATACTACTCTTGCAGAGCAAGTTTTTAGACTCTGCCTACAGGATTTGG  297

seq1  ATAGAATTCCTAGGCCGTCTCTCTCCTTCCCACTGGGAGGCTCATAGCTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTCCTAGGCCGTCTCTCTCCTTCCCACTGGGAGGCTCATAGCTA  347

seq1  CCCGTCTCCAGCTCCAGGGCATCTGATGGCTCTAGCCTCTACAGGCACCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCTCCAGCTCCAGGGCATCTGATGGCTCTAGCCTCTACAGGCACCT  397

seq1  GCATGTATGTGCACATACCCACACGCAAACATATATAATTAAGATAAGAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATGTGCACATACCCACACGCAAACATATATAATTAAGATAAGAT  447

seq1  AAAAATTTAATAATGTAATTAACAACAATAAAAACCTAGAGTCACTTAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAATAATGTAATTAACAACAATAAAAACCTAGAGTCACTTAGC  497

seq1  TGGTGGAGGAGAAGTGAACGCCCACTCGACCCAGAAGTCTCCCCTGTAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGGAGAAGTGAACGCCCACTCGACCCAGAAGTCTCCCCTGTAGT  547

seq1  GGAGTGTTGCCGCCACCAGGTGGCAGTGTTGGCAAGCACACTGCTTCTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTGCCGCCACCAGGTGGCAGTGTTGGCAAGCACACTGCTTCTCT  597

seq1  AGCAGCTGCCAGGCCGGAATAGGAAGAGTTTTATTCCAGTTTCAACTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCCAGGCCGGAATAGGAAGAGTTTTATTCCAGTTTCAACTTTT  647

seq1  ATTTAGAATGGAGATACCTTAATAGACCATCTAATCCCACGTGTCTTCAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATGGAGATACCTTAATAGACCATCTAATCCCACGTGTCTTCAC  697

seq1  CTCAGAAGATGGGCAGCCAGAGATGGGGAAGATCTCTGCCCAAGATCACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGATGGGCAGCCAGAGATGGGGAAGATCTCTGCCCAAGATCACA  747

seq1  GCGTGTTGATAGCAGAGCTCTCTACCTTAACATCCCTAACCTCAGGCACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTGATAGCAGAGCTCTCTACCTTAACATCCCTAACCTCAGGCACT  797

seq1  CAAGGAACGGTTTCCATATCAGCTCTGTCTCTCTGTCTCTCTGTCTCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACGGTTTCCATATCAGCTCTGTCTCTCTGTCTCTCTGTCTCTCT  847

seq1  GTCTCTCTGTCTCTCTGTCTCTCAGTCTCTCTCTCCCCCCTGTGTCTCAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCTCTCTGTCTCTCAGTCTCTCTCTCCCCCCTGTGTCTCAT  897

seq1  GCATCCTCCGGCCTCCACCTCCAAATTTGAGAATTACAGGAAAGCACTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCCGGCCTCCACCTCCAAATTTGAGAATTACAGGAAAGCACTGC  947

seq1  TATGCTTTCGCAGTGCTGGGGTACAAAGCCAGGGCTTCCTTCAGGCTAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTCGCAGTGCTGGGGTACAAAGCCAGGGCTTCCTTCAGGCTAGT  997

seq1  AAGCACTCTGCCAACTGAGCTATGCCCCCAGCCCTTTCTTTTCCTGCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTGCCAACTGAGCTATGCCCCCAGCCCTTTCTTTTCCTGCTTT  1047

seq1  TTATGGGACGGGCTTTCACTATTTAGACTGGAATTC  1078
      ||||||||||||||||||||||||||||||||||||
seq2  TTATGGGACGGGCTTTCACTATTTAGACTGGAATTC  1083

seq1: chr11_101595547_101596120
seq2: B6Ng01-204A14.g_66_641

seq1  GAATTCACAGTATGTATATCTGAAGATTCTTTGTTTCCTTTTTGTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTATGTATATCTGAAGATTCTTTGTTTCCTTTTTGTTTCTT  50

seq1  TGGTGTTGCTACTGAATTTAAATTTTGATCGCACTAAAGGATTTTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGCTACTGAATTTAAATTTTGATCGCACTAAAGGATTTTTAAGT  100

seq1  AGGAAGGAGCGATTTGTGCATATCAAGTAAATAAGCCATCAAATGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGCGATTTGTGCATATCAAGTAAATAAGCCATCAAATGTGTAA  150

seq1  AGTTGCGTTGCTGGCCAGGGAGCCAGATTCCTTCCCCACTGTCCTAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCGTTGCTGGCCAGGGAGCCAGATTCCTTCCCCACTGTCCTAGGAG  200

seq1  AATGCCGCAGGACTTCCGGCAGTAAGTCTGAGGATGCTGACATTCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCGCAGGACTTCCGGCAGTAAGTCTGAGGATGCTGACATTCTTTTG  250

seq1  TTGTTGTTGTTGGTTTGTTTGTTTTTAATTTTTTATTAGATATTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGGTTTGTTTGTTTTTAATTTTTTATTAGATATTTTCTTC  300

seq1  ACTTACATTTTTTAAAGATTTATTTATCTTATTTATGTGAGTACACTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATTTTTTAAAGATTTATTTATCTTATTTATGTGAGTACACTGTA  350

seq1  GCTGTCTTCAGACACTCACCATAAGAGGGCATCAGATCCCATTACAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACTCACCATAAGAGGGCATCAGATCCCATTACAGATG  400

seq1  GTTATGAGCCACCATGTGTTG-TTGCTGGGAATTGAACTCGGGACCTCTG  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTATGAGCCACCATGTGTTGTTTGCTGGGAATTGAACTCGGGACCTCTG  450

seq1  GAAGGGCATTTGGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCCTGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCATTTGGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCCTGAT  500

seq1  GTTGACATTC-TTGTTCTGTGAATCAGGACGTCAGGGACAAGCCGGGCAG  548
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  GTTGACATTCTTTGTTCTGTGAATCAGGACGTCAGGGACAAGTCGGGCAG  550

seq1  TTGTGGCCCACACCTTTAATCCCAGC  574
      ||||||||| ||||||||||||||||
seq2  TTGTGGCCCTCACCTTTAATCCCAGC  576