BAC Information

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BAC

Clone NameB6Ng01-204K20
Chromosome11 (Build37)
Map Location 65,254,375 - 65,450,621
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879, LOC668323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204K20.bB6Ng01-204K20.g
ACCGA024556GA024557
length1,1031,026
definitionB6Ng01-204K20.b B6Ng01-204K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,254,375 - 65,255,454)(65,449,603 - 65,450,621)
sequence
gaattcatcccctgacctgagtttgaattctgtcctattatttaccagat
gaaactgcaatgcgtcttactttcctaggaagaagagctctggcatcaac
acttgaaagataatatataaaatctgctgtggtgcctgatacgtaaaaag
tgtgtaataaatacactcttttgcccccccctcattattctcagaaacat
acctgcctttcatggaattccatgggacacaatgcacaggaacgattgtc
tatgaatacactcttgctttctgtttccccagaactgagagagtttctca
gagatgaaaacattctattttgtaatgtagaagcaagaattactcggctc
tcctctagctttcattctttcctactgtgccctgtgcgaaagaactggtt
ggaaaggattcatggaaaccagtatcatctgtgtaattagacaatccatc
caagtacatacattagcacccaagacagtgtcctgagtgaccccgtccac
tgagtttccctctccttctgatgcaagacactgcagagtatgttagcctt
tgtctggataacatggccctcaagctcactcaacttgccagttcagcatt
atacctctcatttaataaaagccaacatgctttggagtgagaggtatcca
gcactctttgtagcaaacagtattgtctggctgatgcttaagaacaagca
attccaaatcctcaatgatctaaagcaacacttgcttaaacttttcatgt
ttctggggagcacggggaagactttgttttgggttaagtggcaacagcga
tacctgatgattcaagtttgggctctctggtacctacataagaaagccag
gtgtggcagcccgcatctgccattagtagctgggagggcttgaaaacagg
atgaccccttagggcttgctgaccagcctgtctatccccccacccccaaa
aaaatgtaaggcagatgcttgggaaatgggtttggttagttaagcacttt
aactttgaaaccattggggcctacattcagatcccttggatgtagtggta
agtttgggcacagttgtaacatgttcctgtaacccaccattcgtttcctc
cag
gaattctatctgtagatcctgctggccttgaacgcccaaagatctgcctg
cctctgctacccaaatgctgggattaaaggtgtgcactactactgcccag
ccctctatcactctttacttttcaagagtctttttactgagcttgttgac
tgagctatactggctggtcagcaagttgcaggttgcagggggccttcctg
tctctacttctacagtgcttgggtaatgggcctgcaccttcacacctgag
ggtttttgtttgtttgtttgtttcgtattttgttttacagattctgagtc
tcagaagttagattgcttacacttaaccccattgcaccagctctggaagt
gtactttttactggggcttctgtgccatttctttggtgtaagcaatggaa
tctagcttgatggtttgagcaaaaccaaaatctgtggagaggagtcagag
aggatggttcctgctgccatccatctgactcggcatcctttattttcctt
catttccctttgaagacagggtctcattatataacccaggccggttttga
acttgtgatattgttgccccaggctccagagtacttaagggatcacaagt
ctgcaccatcacatctggcttttccctaggaactttgagagtcagagtct
aaggaagttttgagtcagagtcaggttggaggttttgaggaagggaattt
ttgactggcatgctcatcaagggtattcaaaagaggggccagagtgatgg
cttagtccataaagaaacttgttgccaactctgatgatctaagttcgacc
ctctcaaccacatggtggaagaagagaaacaactctgccaagtcaccctc
taatcttcaccatgtgctgtggaatgtgctgtccctcaaatcaatcagtc
aatccaccaatgtaagaaaataattaagtaaaagcttttcaaagactagg
catggtttcctagagtaacagaagctggtaccaaaggaagaaaccataaa
atgcgtgctaagtcataaagtaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65254375_65255454
seq2: B6Ng01-204K20.b_51_1153

seq1  GAATTCATCCCCTGACCTGAGTTTGAATTCTGTCCTATTATTTACCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCCTGACCTGAGTTTGAATTCTGTCCTATTATTTACCAGAT  50

seq1  GAAACTGCAATGCGTCTTACTTTCCTAGGAAGAAGAGCTCTGGCATCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGCAATGCGTCTTACTTTCCTAGGAAGAAGAGCTCTGGCATCAAC  100

seq1  ACTTGAAAGATAATATATAAAATCTGCTGTGGTGCCTGATACGTAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAGATAATATATAAAATCTGCTGTGGTGCCTGATACGTAAAAAG  150

seq1  TGTGTAATAAATACACTCTTTTGCCCCCCCCTCATTATTCTCAGAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATAAATACACTCTTTTGCCCCCCCCTCATTATTCTCAGAAACAT  200

seq1  ACCTGCCTTTCATGGAATTCCATGGGACACAATGCACAGGAACGATTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTTTCATGGAATTCCATGGGACACAATGCACAGGAACGATTGTC  250

seq1  TATGAATACACTCTTGCTTTCTGTTTCCCCAGAACTGAGAGAGTTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATACACTCTTGCTTTCTGTTTCCCCAGAACTGAGAGAGTTTCTCA  300

seq1  GAGATGAAAACATTCTATTTTGTAATGTAGAAGCAAGAATTACTCGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAAACATTCTATTTTGTAATGTAGAAGCAAGAATTACTCGGCTC  350

seq1  TCCTCTAGCTTTCATTCTTTCCTACTGTGCCCTGTGCGAAAGAACTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGCTTTCATTCTTTCCTACTGTGCCCTGTGCGAAAGAACTGGTT  400

seq1  GGAAAGGATTCATGGAAACCAGTATCATCTGTGTAATTAGACAATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATTCATGGAAACCAGTATCATCTGTGTAATTAGACAATCCATC  450

seq1  CAAGTACATACATTAGCACCCAAGACAGTGTCCTGAGTGACCCCGTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACATACATTAGCACCCAAGACAGTGTCCTGAGTGACCCCGTCCAC  500

seq1  TGAGTTTCCCTCTCCTTCTGATGCAAGACACTGCAGAGTATGTTAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCCCTCTCCTTCTGATGCAAGACACTGCAGAGTATGTTAGCCTT  550

seq1  TGTCTGGATAACATGGCCCTCAAGCTCACTCAACTTGCCAGTTCAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGATAACATGGCCCTCAAGCTCACTCAACTTGCCAGTTCAGCATT  600

seq1  ATACCTCTCATTTAATAAAAGCCAACATGCTTTGGAGTGAGAGGTATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTCATTTAATAAAAGCCAACATGCTTTGGAGTGAGAGGTATCCA  650

seq1  GCACTCTTTGTAGCAAACAGTATTGTCTGGCTGATGCTTAAGAACAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTTGTAGCAAACAGTATTGTCTGGCTGATGCTTAAGAACAAGCA  700

seq1  ATTCCAAATCCTCAATGATCTAAAGCAACACTTGCTTAAAC-TTTCATG-  748
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  ATTCCAAATCCTCAATGATCTAAAGCAACACTTGCTTAAACTTTTCATGT  750

seq1  TTCTGGGGAGCACGGGGAAGAC-TTGTTT--GGTTAAGTGGCAACAGCGA  795
      |||||||||||||||||||||| ||||||  |||||||||||||||||||
seq2  TTCTGGGGAGCACGGGGAAGACTTTGTTTTGGGTTAAGTGGCAACAGCGA  800

seq1  TACCTGATGATTCAAGTTT-GGCTCTCTGGTACCTACATAAGAAAGCCAG  844
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACCTGATGATTCAAGTTTGGGCTCTCTGGTACCTACATAAGAAAGCCAG  850

seq1  GTGTGGCAGCCCGCATCTG-CAATAGTAGCTGGGAGGGC-TGAAAACAGG  892
      ||||||||||||||||||| || |||||||||||||||| ||||||||||
seq2  GTGTGGCAGCCCGCATCTGCCATTAGTAGCTGGGAGGGCTTGAAAACAGG  900

seq1  ATGA-CCCTTAGGGCTTGCTGACCAGCCTGTCTATCCCCCCA-CCCCAAA  940
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGACCCCTTAGGGCTTGCTGACCAGCCTGTCTATCCCCCCACCCCCAAA  950

seq1  AAAATGTAAGGCAGAAGGCTGGGGAAAT-GGTTTGGTAGGTAAAGCACTT  989
      |||||||||||||| | ||| ||||||| ||||||||  || ||||||||
seq2  AAAATGTAAGGCAG-ATGCTTGGGAAATGGGTTTGGTTAGTTAAGCACTT  999

seq1  --ACCTTGAAAACA-TGGGGCCTACATTCAGAT-CCTTGGATGTAGTGGT  1035
        || |||||| || |||||||||||||||||| ||||||||||||||||
seq2  TAACTTTGAAACCATTGGGGCCTACATTCAGATCCCTTGGATGTAGTGGT  1049

seq1  AAG-TTGGGCACAG-TGGCACATGT--CTGTACCACA----TCG-TTCCT  1076
      ||| |||||||||| ||  ||||||  ||||| | ||    ||| |||||
seq2  AAGTTTGGGCACAGTTGTAACATGTTCCTGTAACCCACCATTCGTTTCCT  1099

seq1  CCAG  1080
      ||||
seq2  CCAG  1103

seq1: chr11_65449603_65450621
seq2: B6Ng01-204K20.g_68_1093 (reverse)

seq1  ATGTTACTTT-TGACTT-GCACACATTTTAT-GTTTCTTCCTTTGGTACC  47
      |||||||||| |||||| |||| |||||||| ||||||||||||||||||
seq2  ATGTTACTTTATGACTTAGCACGCATTTTATGGTTTCTTCCTTTGGTACC  50

seq1  AGC-TCTTGTACTCTAGGAAACCATGCCTAGTCTTTTGAAAAGCTCTTTA  96
      ||| |||  |||||||||||||||||||||||| ||||||||||| ||||
seq2  AGCTTCTGTTACTCTAGGAAACCATGCCTAGTC-TTTGAAAAGCT-TTTA  98

seq1  CTT-ATTATTTTCTTACATTGGTTGATTGACTGATTGATTTTGTAGGGAC  145
      ||| ||||||||||||||||||| |||||||||||||||||   ||||||
seq2  CTTAATTATTTTCTTACATTGGTGGATTGACTGATTGATTT--GAGGGAC  146

seq1  AGCACATTCCACAGCACATGGTTGAAGATTAGAGGGTGACTTGGCAGAGT  195
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCACATTCCACAGCACATGG-TGAAGATTAGAGGGTGACTTGGCAGAGT  195

seq1  TGTTTCTCTCTTTCCACCATGTGGTTGAGAGGGTCGAACTTAGATCATCA  245
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTTCTTCCACCATGTGGTTGAGAGGGTCGAACTTAGATCATCA  245

seq1  GAGTTGGCAACAAGTTTCTTTATGGACTAAGCCATCACTCTGGCCCCTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCAACAAGTTTCTTTATGGACTAAGCCATCACTCTGGCCCCTCT  295

seq1  TTTGAATACCCTTGATGAGCATGCCAGTC-AAAATTCCCTTCCTC-AAAC  343
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TTTGAATACCCTTGATGAGCATGCCAGTCAAAAATTCCCTTCCTCAAAAC  345

seq1  CTCC-ACCTGACTCTGACTC-AAACTTCCTTAGACTCTGACTCTC-AAGT  390
      |||| ||||||||||||||| |||||||||||||||||||||||| ||||
seq2  CTCCAACCTGACTCTGACTCAAAACTTCCTTAGACTCTGACTCTCAAAGT  395

seq1  TCCTAGGG-AAAGCCAGATGTGATGGTGCAGACTTGTGATCCCTTAAGTA  439
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGAAAAGCCAGATGTGATGGTGCAGACTTGTGATCCCTTAAGTA  445

seq1  CTCTGGAGCCTGGGGCAACAATATCACAAGTTCAAAACCGGCCTGGGTTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGCCTGGGGCAACAATATCACAAGTTCAAAACCGGCCTGGGTTA  495

seq1  TATAATGAGACCCTGTCTTCAAAGGGAAATGAAGGAAAAT-AAGGATGCC  538
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATAATGAGACCCTGTCTTCAAAGGGAAATGAAGGAAAATAAAGGATGCC  545

seq1  GAGTCAGATGGATGGCAGCAGGAACCATCCTCTCTGACTCCTCTCCACAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGATGGATGGCAGCAGGAACCATCCTCTCTGACTCCTCTCCACAG  595

seq1  ATTTTGGTTTTGCTCAAACCATCAAGCTAGATTCCATTGCTTACACCAAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTTTTGCTCAAACCATCAAGCTAGATTCCATTGCTTACACCAAA  645

seq1  GAAATGGCACAGAAGCCCCAGTAAAAAGTACACTTCCAGAGCTGGTGCAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCACAGAAGCCCCAGTAAAAAGTACACTTCCAGAGCTGGTGCAA  695

seq1  TGGGGTTAAGTGTAAGCAATCTAACTTCTGAGACTCAGAATCTGTAAAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTAAGTGTAAGCAATCTAACTTCTGAGACTCAGAATCTGTAAAAC  745

seq1  AAAATACGAAACAAACAAACAAACAAAAACCCTCAGGTGTGAAGGTGCAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACGAAACAAACAAACAAACAAAAACCCTCAGGTGTGAAGGTGCAG  795

seq1  GCCCATTACCCAAGCACTGTAGAAGTAGAGACAGGAAGGCCCCCTGCAAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTACCCAAGCACTGTAGAAGTAGAGACAGGAAGGCCCCCTGCAAC  845

seq1  CTGCAACTTGCTGACCAGCCAGTATAGCTCAGTCAACAAGCTCAGTAAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTTGCTGACCAGCCAGTATAGCTCAGTCAACAAGCTCAGTAAAA  895

seq1  AGACTCTTGAAAAGTAAAGAGTGATAGAGGGCTGGGCAGTAGTAGTGCAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTGAAAAGTAAAGAGTGATAGAGGGCTGGGCAGTAGTAGTGCAC  945

seq1  ACCTTTAATCCCAGCATTTGGGTAGCAGAGGCAGGCAGATCTTTGGGCGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATCCCAGCATTTGGGTAGCAGAGGCAGGCAGATCTTTGGGCGT  995

seq1  TCAAGGCCAGCAGGATCTACAGATAGAATTC  1019
      |||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCAGGATCTACAGATAGAATTC  1026