BAC Information

Click to search

BAC

Clone NameB6Ng01-205I03
Chromosome11 (Build37)
Map Location 38,287,348 - 38,464,158
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039148, LOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205I03.bB6Ng01-205I03.g
ACCGA025170GA025171
length1,1441,129
definitionB6Ng01-205I03.b B6Ng01-205I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,287,348 - 38,288,490)(38,463,039 - 38,464,158)
sequence
gaattctttgtttagttctatttacctttaacttttaacactggcaatat
gagagtttgggaaatattttactcctaacccttagccaaaccttatatat
ccaaaccttagtcagagcacattacaaaaatgcatgtgatgcttgtaaag
gtctctcctgtgttgtgttgcaatttctagataattgatcttctctctag
tctctaaattctgtgttcctttgaatgaatatatgcaattaaggatgtct
gctttgtgtcaggatagagctaatttaaaacaaaaatatgaaaatcagat
acaggtaattgttatatgtcttctacttaaagacatgaatgcctttggca
caactgctaatgtgtcaataatttttttactattattcatttatgcagaa
gagtgaataagttactaaaaccatatttatataaatctcagaattcaaat
taacatagaatgtatttattctatagtcattgatatttttaaacaaattg
aattctgattcattagcaaaaaatttcctcacttctgaacagcatattta
aatttttaattcaaaaattaataatgtatatgttacaatttaaattgttt
gaagagagaaaatatgagcagcatgatcaaataccatggatacagataga
tatataattaataatatagaatcagttgcttaggataatgatggtcaaag
atttttaaagtgatgagtacaaatgtagaattggcatagtttaaatatat
ttccaaattgtcttagttacgcttttactggtctgaacagacactgtgac
caaggtaactcttataaaggacaaaatttaattgggcctggattactggt
tgtgaggttcagtccattatcatcatggaagcagtaagacaggcatgatg
ctgaagaagctgagagttctacatcttgttaaaagggctcctaggagaaa
actgatttccatatgactagaggaagttctcaaagcccacccctacagtg
acacatttttccaataatggcacaccttattccagcaaggccatagctcc
ttataatgccattctgggccagcatttttcaacaccacacacaaacttat
tctaaaagatcagtctttcatatacagatagaaacagacactga

gaattcaaaattgtgaggatggacattcttattatactctcaaagctctc
taacagtggccaaacgaaggtgcgtgtgtattcatgaaagataatgtcta
gacaacagaatggatgagcttaaggttactgagagaccctgtctgaaatc
taaagagagcaatgttagaaatatacctgatgctaacttctcattctata
tacatgtcacatacatacatacacatgcacacacacacattcaaatgata
tgcacagacatgaatatatataaacaaaattaaatgaaatatattaattt
tttgagcaattagtttttgagtttaatggatacttcttgcagattggttt
ctgtagctcgaataaggtaaacaacttttataaaccttatttatattatg
ttatttgggatgttttaacatgtgtttatacacatggcatatcctataac
atcaaaataatatgatgttgggaatggtaatagatgcctttaattctgca
agttgggggctgaggcaggcagatatatgttagctctgggccacaatggt
taatacagtgaattccagactagcaagacctatatacagagtccctgcca
tgaaaagagaaaagcaaaacaaacaataaacaaacaaaagttcagtcact
aaatttgtgaccttaaatagatgcccccatttatcagacatttttttatt
tatttattttttattttttgaacaccttcttgtttttgtttttgcttttc
tttttttgttttttgtttttttttttttttttctttcaagacagggtttc
tctgtgtagcacttggctgtcctagaactcactcttgtagaccaggctgt
cctggaacttcagaatctgcctgcctcttgcctcccaagtgcctgggatt
aaaggtccttgtgccaccaccgtccaactggaattttttcttttattctt
ccatatttcacagccaaatctaatagaatgtttcatccatatgggataat
ttatatttttgaactttttataaaactactagcagggtatggtggccata
tactttaaataccagcattcgaagtttcaggcatcatgactacttacatg
ttctatggtcaaacaagggttgcactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38287348_38288490
seq2: B6Ng01-205I03.b_48_1191

seq1  GAATTCTTTGTTTAGTTCTATTTACCTTTAACTTTTAACACTGGCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGTTCTATTTACCTTTAACTTTTAACACTGGCAATAT  50

seq1  GAGAGTTTGGGAAATATTTTACTCCTAACCCTTAGCCAAACCTTATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTGGGAAATATTTTACTCCTAACCCTTAGCCAAACCTTATATAT  100

seq1  CCAAACCTTAGTCAGAGCACATTACAAAAATGCATGTGATGCTTGTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTTAGTCAGAGCACATTACAAAAATGCATGTGATGCTTGTAAAG  150

seq1  GTCTCTCCTGTGTTGTGTTGCAATTTCTAGATAATTGATCTTCTCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTGTGTTGTGTTGCAATTTCTAGATAATTGATCTTCTCTCTAG  200

seq1  TCTCTAAATTCTGTGTTCCTTTGAATGAATATATGCAATTAAGGATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAATTCTGTGTTCCTTTGAATGAATATATGCAATTAAGGATGTCT  250

seq1  GCTTTGTGTCAGGATAGAGCTAATTTAAAACAAAAATATGAAAATCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTCAGGATAGAGCTAATTTAAAACAAAAATATGAAAATCAGAT  300

seq1  ACAGGTAATTGTTATATGTCTTCTACTTAAAGACATGAATGCCTTTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAATTGTTATATGTCTTCTACTTAAAGACATGAATGCCTTTGGCA  350

seq1  CAACTGCTAATGTGTCAATAATTTTTTTACTATTATTCATTTATGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTAATGTGTCAATAATTTTTTTACTATTATTCATTTATGCAGAA  400

seq1  GAGTGAATAAGTTACTAAAACCATATTTATATAAATCTCAGAATTCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATAAGTTACTAAAACCATATTTATATAAATCTCAGAATTCAAAT  450

seq1  TAACATAGAATGTATTTATTCTATAGTCATTGATATTTTTAAACAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGAATGTATTTATTCTATAGTCATTGATATTTTTAAACAAATTG  500

seq1  AATTCTGATTCATTAGCAAAAAATTTCCTCACTTCTGAACAGCATATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATTCATTAGCAAAAAATTTCCTCACTTCTGAACAGCATATTTA  550

seq1  AATTTTTAATTCAAAAATTAATAATGTATATGTTACAATTTAAATTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATTCAAAAATTAATAATGTATATGTTACAATTTAAATTGTTT  600

seq1  GAAGAGAGAAAATATGAGCAGCATGATCAAATACCATGGATACAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGAAAATATGAGCAGCATGATCAAATACCATGGATACAGATAGA  650

seq1  TATATAATTAATAATATAGAATCAGTTGCTTAGGATAATGATGGTCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTAATAATATAGAATCAGTTGCTTAGGATAATGATGGTCAAAG  700

seq1  ATTTTTAAAGTGATGAGTACAAATGTAGAATTGGCATAGTTTAAATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGTGATGAGTACAAATGTAGAATTGGCATAGTTTAAATATAT  750

seq1  TTCCAAATTGTCTTAGTTACGCTTTTACTGGTCTGAACAGACACTGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTGTCTTAGTTACGCTTTTACTGGTCTGAACAGACACTGTGAC  800

seq1  CAAGGTAACTCTTATAAAGGACAAAATTTAATTGGGCCTGGATTACTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAACTCTTATAAAGGACAAAATTTAATTGGGCCTGGATTACTGGT  850

seq1  TGTGAGGTTCAGTCCATTATCATCATGGAAGCAGTAAGACAGGCATGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTTCAGTCCATTATCATCATGGAAGCAGTAAGACAGGCATGATG  900

seq1  CTGAAGAAGCTGAGAGTTCTACATCTTGTTAAAAGGGCTCCTAGGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGCTGAGAGTTCTACATCTTGTTAAAAGGGCTCCTAGGAGAAA  950

seq1  ACTGATTTCCATATGACTAGAGGAAGTTCTCAAAGCCCACCCCTACAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTCCATATGACTAGAGGAAGTTCTCAAAGCCCACCCCTACAGTG  1000

seq1  ACACATTTTTCCAATATGGCCACACC-TATTCCAGCAAGGCCATAGCTCC  1049
      ||||||||||||||||  | |||||| |||||||||||||||||||||||
seq2  ACACATTTTTCCAATAATGGCACACCTTATTCCAGCAAGGCCATAGCTCC  1050

seq1  TTATAATGCCATTCCTTGGGCCAAGCA-TTTTCAA-ACCACCACACAAAC  1097
      ||||||||||||||  |||||| |||| ||||||| |||| |||||||||
seq2  TTATAATGCCATTC--TGGGCC-AGCATTTTTCAACACCA-CACACAAAC  1096

seq1  TATCTTAAAAAGATCAGTCTT--CTATACAG-TAGAAACAGACAACTGA  1143
      |   |  ||||||||||||||   ||||||| ||||||||||| |||||
seq2  TTATTCTAAAAGATCAGTCTTTCATATACAGATAGAAACAGAC-ACTGA  1144


seq1: chr11_38463039_38464158
seq2: B6Ng01-205I03.g_67_1195 (reverse)

seq1  GTGAGTGCAGCCCTTGTTTG--CCTTGAACTTGT-AGTAGTCATGATGCC  47
      ||||||||| ||||||||||  | | |||| ||| |||||||||||||||
seq2  GTGAGTGCAACCCTTGTTTGACCATAGAACATGTAAGTAGTCATGATGCC  50

seq1  TGAAACTTCTGAATGCTGGTATTATAAGTATATGTGCCACCATAACCTGC  97
      ||||||||| |||||||||||||  ||||||||| ||||||||| |||||
seq2  TGAAACTTC-GAATGCTGGTATTTAAAGTATATG-GCCACCATACCCTGC  98

seq1  TAGTAGTTTTAATAAAAGTTCAAAAAATATAAATTTATCCATATGGATG-  146
      |||||||||||  |||||||| |||||||||||||   ||||||||||| 
seq2  TAGTAGTTTTATAAAAAGTTC-AAAAATATAAATTATCCCATATGGATGA  147

seq1  AACATTCTATTAGATTTGGCTGTGAATTATTGGAAGATTAAAAGAAAAAA  196
      |||||||||||||||||||||||||| || ||||||| ||||||||||||
seq2  AACATTCTATTAGATTTGGCTGTGAAATA-TGGAAGAATAAAAGAAAAAA  196

seq1  TT-CAGGTGGACGGTGGTGGCAC-AGGA-CTTTAATCCCA-GCACTTGGG  242
      || ||| |||||||||||||||| |||| ||||||||||| |||||||||
seq2  TTCCAGTTGGACGGTGGTGGCACAAGGACCTTTAATCCCAGGCACTTGGG  246

seq1  AGGC-AGAGGCAGGCAGATTTCTG-AGTTCCAGGACAGCCTGGTCTAC-A  289
      |||| ||||||||||||| ||||| ||||||||||||||||||||||| |
seq2  AGGCAAGAGGCAGGCAGA-TTCTGAAGTTCCAGGACAGCCTGGTCTACAA  295

seq1  GAGTGAGTTCTAGGACAGCC-AGTGCTACACAGAGAAACCCTGTCTTGAA  338
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGTGAGTTCTAGGACAGCCAAGTGCTACACAGAGAAACCCTGTCTTGAA  345

seq1  AGAAAAAAAAAACAAAAAACAAAAAAC-AAAAAAGAAAAGCAAAAACAAA  387
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  AGAAAAAAAAAAAAAAAAACAAAAAACAAAAAAAGAAAAGCAAAAACAAA  395

seq1  AACAAGAAGGTGTTCAAAAAATAAAAAATAAATAAAT-AAAAAATGTCTG  436
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAAGAAGGTGTTCAAAAAATAAAAAATAAATAAATAAAAAAATGTCTG  445

seq1  ATAAATGGGGGCATCTATTTAAGGTCACAAATTTAGTGACTGAACTTTTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGGGGCATCTATTTAAGGTCACAAATTTAGTGACTGAACTTTTG  495

seq1  TTTGTTTATTGTTTGTTTTGCTTTTCTCTTTTCATGGCAGGGACTCTGTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTGTTTGTTTTGCTTTTCTCTTTTCATGGCAGGGACTCTGTA  545

seq1  TATAGGTCTTGCTAGTCTGGAATTCACTGTATTAACCATTGTGGCCCAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTCTTGCTAGTCTGGAATTCACTGTATTAACCATTGTGGCCCAGA  595

seq1  GCTAACATATATCTGCCTGCCTCAGCCCCCAACTTGCAGAATTAAAGGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATATATCTGCCTGCCTCAGCCCCCAACTTGCAGAATTAAAGGCA  645

seq1  TCTATTACCATTCCCAACATCATATTATTTTGATGTTATAGGATATGCCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACCATTCCCAACATCATATTATTTTGATGTTATAGGATATGCCA  695

seq1  TGTGTATAAACACATGTTAAAACATCCCAAATAACATAATATAAATAAGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATAAACACATGTTAAAACATCCCAAATAACATAATATAAATAAGG  745

seq1  TTTATAAAAGTTGTTTACCTTATTCGAGCTACAGAAACCAATCTGCAAGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAGTTGTTTACCTTATTCGAGCTACAGAAACCAATCTGCAAGA  795

seq1  AGTATCCATTAAACTCAAAAACTAATTGCTCAAAAAATTAATATATTTCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCATTAAACTCAAAAACTAATTGCTCAAAAAATTAATATATTTCA  845

seq1  TTTAATTTTGTTTATATATATTCATGTCTGTGCATATCATTTGAATGTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGTTTATATATATTCATGTCTGTGCATATCATTTGAATGTGT  895

seq1  GTGTGTGCATGTGTATGTATGTATGTGACATGTATATAGAATGAGAAGTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGTATGTATGTATGTGACATGTATATAGAATGAGAAGTT  945

seq1  AGCATCAGGTATATTTCTAACATTGCTCTCTTTAGATTTCAGACAGGGTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGGTATATTTCTAACATTGCTCTCTTTAGATTTCAGACAGGGTC  995

seq1  TCTCAGTAACCTTAAGCTCATCCATTCTGTTGTCTAGACATTATCTTTCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAACCTTAAGCTCATCCATTCTGTTGTCTAGACATTATCTTTCA  1045

seq1  TGAATACACACGCACCTTCGTTTGGCCACTGTTAGAGAGCTTTGAGAGTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACACACGCACCTTCGTTTGGCCACTGTTAGAGAGCTTTGAGAGTA  1095

seq1  TAATAAGAATGTCCATCCTCACAATTTTGAATTC  1120
      ||||||||||||||||||||||||||||||||||
seq2  TAATAAGAATGTCCATCCTCACAATTTTGAATTC  1129


| Home | SequenceCutter | Blast | Download |