BAC Information

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BAC

Clone NameB6Ng01-206L01
Chromosome2 (Build37)11 (Build37)
Map Location 155,483,996 - 155,484,125102,278,280 - 102,278,992
singlet/doubletsingletsinglet
Overlap geneTrpc4ap
Upstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b
Downstream geneEdem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206L01.bB6Ng01-206L01.g
ACCGA026043GA026044
length661714
definitionB6Ng01-206L01.b B6Ng01-206L01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(155,483,996 - 155,484,125)(102,278,280 - 102,278,992)
sequence
gaattcctcttgttcttcttctttttttttttctttctcctttttctaat
tgagatttaaagccagaccagaggtggcacatgcccttaattttagcacc
tggggaggcagaggtaggcatttctctggatctctgagtttgaggctagc
ctggtctccagagcaagttccaggacagccaggaatataaaaagaagccc
tatcttgaaaaacaaacaagcaaacaaacaaacaaagatatatatttgtt
attgtgtgtacatgtgtgtgcttatatgggttgatgggtatcatatacat
gcaaatacccatcaaggccagaagagggcgttagttccccagacactggg
gtagctggtggttgtgagcttctatgtgggttctgggaacaagcccgagt
ctgacgcaggtaaaggctcctaaatgctgagccttctctctagccctgag
ggactcttgatttttttttttttttttttttttttttaagttttgactgt
tgctttttttttttttttttttttttttatttatttatttattatatgga
agtacactgtagctgtcctcagacactccaaaagagggagtcagatcttg
ttacagatggttgtgagccaccatgtggttgctgggatttgaactctgga
ccttcggaaga
gaattccacacccctaagccccttaccccataaaaaaacccctagctttc
gagcctcgcggcagacatccattatctcctgtgtgggatacatgtcggtc
tggagctccgtaattaaacgacctcatgtaattacatcaagatggtcctt
tgtgattttttgggtgtacactgaatcgggaattgagtgggggtttcccc
actaggttctatcagagcaaagcaagttggggagggataagtcagcctac
acttccacatcactgttcatcaccaaaggaagtcaggacaggaactcaca
caggacagggacttggagtcaggagctgatgcagaggccatggagggatg
ctgcttactggcttcctcacctggcttgctcatcctgatgttttatagaa
cccaggaccaccagtgtagggagagcaccacccacaatgagatgggccct
cccccatcaatcattaattaacaagttgccctggtggtggtaggtgacag
ctgcagctgggtacaagtttaatctcagctctagggagacagaggcagat
gcaggtggatctctgtgagtttgagggtagcctgatctacggagctagtg
ccaagatagccagagctacaacaaaaatgagagagagagagagagagaga
gatatgagaaagagacatgagagagagggagagagaggagagaaatgaga
gagagagagcgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155483996_155484125
seq2: B6Ng01-206L01.b_563_705 (reverse)

seq1  TCTTCCGAAGGTTCTGAGTTCAAATCCCAGCAACCACATGATGGCTTACA  50
      |||||||||||| | ||||||||||||||||||||||||| ||||| |||
seq2  TCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA  50

seq1  ACCAT-------------------CCTCTCCTGGTTTGTCTGAAGACAGC  81
      |||||                   |||||  |||  ||||||| ||||||
seq2  ACCATCTGTAACAAGATCTGACTCCCTCTTTTGGAGTGTCTGAGGACAGC  100

seq1  TACAGTGTACTTACATATAAGATAAAT-AATAAATAAATCATTAAAAAAA  130
      |||||||||||| ||||||  |||||| ||||||||||     |||||||
seq2  TACAGTGTACTTCCATATA--ATAAATAAATAAATAAA-----AAAAAAA  143

seq1: chr11_102278280_102278992
seq2: B6Ng01-206L01.g_68_781

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAAAACCCCTAGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAAAACCCCTAGCTTTC  50

seq1  GAGCCTCGCGGCAGACATCCATTATCTCCTGTGTGGGATACATGTCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCGCGGCAGACATCCATTATCTCCTGTGTGGGATACATGTCGGTC  100

seq1  TGGAGCTCCGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCCGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTT  150

seq1  TGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAGTGGGGGTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAGTGGGGGTTTCCCC  200

seq1  ACTAGGTTCTATCAGAGCAAAGCAAGTTGGGGAGGGATAAGTCAGCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTCTATCAGAGCAAAGCAAGTTGGGGAGGGATAAGTCAGCCTAC  250

seq1  ACTTCCACATCACTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATCACTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACA  300

seq1  CAGGACAGGGACTTGGAGTCAGGAGCTGATGCAGAGGCCATGGAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGGACTTGGAGTCAGGAGCTGATGCAGAGGCCATGGAGGGATG  350

seq1  CTGCTTACTGGCTTCCTCACCTGGCTTGCTCATCCTGATGTTTTATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACTGGCTTCCTCACCTGGCTTGCTCATCCTGATGTTTTATAGAA  400

seq1  CCCAGGACCACCAGTGTAGGGAGAGCACCACCCACAATGAGATGGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACCACCAGTGTAGGGAGAGCACCACCCACAATGAGATGGGCCCT  450

seq1  CCCCCATCAATCATTAATTAACAAGTTGCCCTGGTGGTGGTAGGTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCAATCATTAATTAACAAGTTGCCCTGGTGGTGGTAGGTGACAG  500

seq1  CTGCAGCTGGGTACAAGTTTAATCTCAGCTCTAGGGAGACAGAGGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGGGTACAAGTTTAATCTCAGCTCTAGGGAGACAGAGGCAGAT  550

seq1  GCAGGTGGATCTCTGTGAGTTTGAGGGTAGCCTGATCTACGGAGCTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATCTCTGTGAGTTTGAGGGTAGCCTGATCTACGGAGCTAGTG  600

seq1  CCAAGATAGCCAGAGCTACAACAAAAATGAGAGAGAGAGAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGCCAGAGCTACAACAAAAATGAGAGAGAGAGAGAGAGAGAGA  650

seq1  GATATGAGAAAGAGACATGAGAGAGA-GGAGAGAGAGGAGAGAAATGAGA  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATATGAGAAAGAGACATGAGAGAGAGGGAGAGAGAGGAGAGAAATGAGA  700

seq1  GAGAGAGAGGGAGA  713
      ||||||||| ||||
seq2  GAGAGAGAGCGAGA  714