BAC Information

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BAC

Clone NameB6Ng01-207C23
Chromosome11 (Build37)
Map Location 41,235,393 - 41,236,553
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
Downstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207C23.bB6Ng01-207C23.g
ACCGA026407GA026408
length1,1711,162
definitionB6Ng01-207C23.b B6Ng01-207C23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttattgtttagctctcagattagagacaaaagcactccataga
aagcatgtatagccaagtgaataaatacctgttgagtgctcataatttag
tcagagttagtaaggaaattgttatgatgcagttctttgttataattcta
ttaaagatgaaatattttgcagagatttgctaagatgattaaaatgaatc
tcttgttcttattagctgagtcaattctagggcttagaacaaagatttaa
atgtacaagtatcaaatttcgaccaaaggcgctgtaatgatcacgctagc
caaaatgtcattgcaatgtctatgcatacagatacacactagaaaaccaa
tacaaaaaaactaacagggtatgccaaaagaattaagtaactcggaagac
tccaaactcagttttaaaatgcatcctgtatttttttcagcatgatgcaa
ataactcatttacatacactgacctttctgatagaaatcatactaaaaaa
ctcaagggatgtatgcccctacttgtcattttatactttaatttgtagat
gaagatgagcattcatttgaaaagttggcacttccagtctgtaaatagaa
ataaatactactcctgccacatttttcgcacttagcatgtgctgtctaag
ttattaaatcatacctgctctctttatttaaatatatgtgcagattgaag
cataattacatgtttttctaaagtttctgtaaatcttgactttttactgc
ttattttatttacatttcaaatattatcccctttcccattttcccctctg
tatcttaagttagttgattaagttcatcctgttaatatctgaaaagcaat
atttgcaccaaatttttatgctcaacctctgtagagtgctagtcctgaaa
caatagggtagctattgaccatctcatctgtgcactaccccctgatttac
ctctgttatatatgtataaggaatacatttggaataatttcagtagttga
cacagtacgaagttgattagttcaaaaccgccacaagtatgtcaaaccct
ttgggaccttttgttaaacaagtttgaactttttctttcttcgacagctg
gaacaataaattatcactaaaacgctctccatgtaagaagacatgtgtct
aatcacacatattgattgttt
gaattctcacctgaggattaccgaatggctgagaagcacctgaaaaaatg
ttcagcatccataatcatcagagaaatgcatatcaaagcaaccctgagat
tccacctcaaaccagtcagaatggctaatatcaaaaattcaggtgacaga
agatgctggaaaggatgtggagaaagaggaacactcctccattgttattg
ggattgcaagcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaattggacatattcctactggaggatccagcaatacctctcctgggc
atatatccagaaggtgttccaactgttaagaaggacacatgcttcactat
tttcatagcagccttatttataatagccaaaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacataatg
gagtactactcagctattaaaaacaatgaatttatgaattttctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccattcccaaa
aaactcacatgacatgtactcactgataattggatattagtccagaaact
tagaatccccaagatacaagatagaatttttaaaacacatgaaactcaag
aagaataaagaccaaagagtggacactttgtcccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaatatttggagctgagacgg
aaggacggtccatctagagactgccatacctggggatccatcccataatc
agcttccaaacgatgacaccattgcatacaatagcaagattttgctgaaa
ggacccatatatagctgtctcttgtgaggctatgcctggggcctagcaaa
cagagaagtgaatggtcacagtcagctattggatgggacacagagccccc
aatgggaagaaagtacccaagagctaaagggtctgcaacctatagtgaca
catatgactacagtacccccccccccgcccactcagagctcatgtctcta
gctgcatatttaatcagaagatagcttagttagtcaatcatgaagagaag
ccatgaatctgcaactagatgctcagtatacggacgctcaatgttcagaa
actgggagattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41235393_41236553
seq2: B6Ng01-207C23.b_31_1201

seq1  GAATTCTTTATTGTTTAGCTCTCAGATTAGAGACAAAAGCACTCCATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTGTTTAGCTCTCAGATTAGAGACAAAAGCACTCCATAGA  50

seq1  AAGCATGTATAGCCAAGTGAATAAATACCTGTTGAGTGCTCATAATTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTATAGCCAAGTGAATAAATACCTGTTGAGTGCTCATAATTTAG  100

seq1  TCAGAGTTAGTAAGGAAATTGTTATGATGCAGTTCTTTGTTATAATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTAGTAAGGAAATTGTTATGATGCAGTTCTTTGTTATAATTCTA  150

seq1  TTAAAGATGAAATATTTTGCAGAGATTTGCTAAGATGATTAAAATGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATGAAATATTTTGCAGAGATTTGCTAAGATGATTAAAATGAATC  200

seq1  TCTTGTTCTTATTAGCTGAGTCAATTCTAGGGCTTAGAACAAAGATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTTATTAGCTGAGTCAATTCTAGGGCTTAGAACAAAGATTTAA  250

seq1  ATGTACAAGTATCAAATTTCGACCAAAGGCGCTGTAATGATCACGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAGTATCAAATTTCGACCAAAGGCGCTGTAATGATCACGCTAGC  300

seq1  CAAAATGTCATTGCAATGTCTATGCATACAGATACACACTAGAAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCATTGCAATGTCTATGCATACAGATACACACTAGAAAACCAA  350

seq1  TACAAAAAAACTAACAGGGTATGCCAAAAGAATTAAGTAACTCGGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAACTAACAGGGTATGCCAAAAGAATTAAGTAACTCGGAAGAC  400

seq1  TCCAAACTCAGTTTTAAAATGCATCCTGTATTTTTTTCAGCATGATGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTCAGTTTTAAAATGCATCCTGTATTTTTTTCAGCATGATGCAA  450

seq1  ATAACTCATTTACATACACTGACCTTTCTGATAGAAATCATACTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCATTTACATACACTGACCTTTCTGATAGAAATCATACTAAAAAA  500

seq1  CTCAAGGGATGTATGCCCCTACTTGTCATTTTATACTTTAATTTGTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGATGTATGCCCCTACTTGTCATTTTATACTTTAATTTGTAGAT  550

seq1  GAAGATGAGCATTCATTTGAAAAGTTGGCACTTCCAGTCTGTAAATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGCATTCATTTGAAAAGTTGGCACTTCCAGTCTGTAAATAGAA  600

seq1  ATAAATACTACTCCTGCCACATTTTTCGCACTTAGCATGTGCTGTCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACTACTCCTGCCACATTTTTCGCACTTAGCATGTGCTGTCTAAG  650

seq1  TTATTAAATCATACCTGCTCTCTTTATTTAAATATATGTGCAGATTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATCATACCTGCTCTCTTTATTTAAATATATGTGCAGATTGAAG  700

seq1  CATAATTACATGTTTTTCTAAAGTTTCTGTAAATCTTGACTTTTTACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACATGTTTTTCTAAAGTTTCTGTAAATCTTGACTTTTTACTGC  750

seq1  TTATTTTATTTACATTTCAAATATTATCCCCTTTCCCATTTTCCCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTACATTTCAAATATTATCCCCTTTCCCATTTTCCCCTCTG  800

seq1  TATCTTAAGTTAGTTGATTAAGTTCATCCTGTTAATATCTGAAAAGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAGTTAGTTGATTAAGTTCATCCTGTTAATATCTGAAAAGCAAT  850

seq1  ATTTGCACCAAATTTTTATGCTCAACCTCTGTAGAGTGCTAGTCCTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACCAAATTTTTATGCTCAACCTCTGTAGAGTGCTAGTCCTGAAA  900

seq1  CAATAGGGTAGCTATTGACCATCTCATCTGTGCACTACCCCCTGATTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGGTAGCTATTGACCATCTCATCTGTGCACTACCCCCTGATTTAC  950

seq1  CTCTGTTATATATGTATAAGGAATACATTTGGAATAATTTCAGTAGTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTATATATGTATAAGGAATACATTTGGAATAATTTCAGTAGTTGA  1000

seq1  CACAGTACGAAGTTGATTAGTTCAAAAACG-CACAAGTATGTCAAACC--  1047
      ||||||||||||||||||||||||||| || |||||||||||||||||  
seq2  CACAGTACGAAGTTGATTAGTTCAAAACCGCCACAAGTATGTCAAACCCT  1050

seq1  TTTGGACC-TTTGTAAAACA--GTTGAAC-TTTTCTTCCTTCCAACAGCT  1093
      || ||||| ||||| |||||   |||||| ||||||| ||| | ||||||
seq2  TTGGGACCTTTTGTTAAACAAGTTTGAACTTTTTCTTTCTT-CGACAGCT  1099

seq1  -GAAC-ATAAATTATCACTTAAAACGCTCTCCAATGTAAG-AGACATGTG  1140
       |||| |||||||||||| ||||||||||||| ||||||| |||||||||
seq2  GGAACAATAAATTATCAC-TAAAACGCTCTCC-ATGTAAGAAGACATGTG  1147

seq1  TCTAATCACATA---TGATTGTTT  1161
      |||||||||| |   |||||||||
seq2  TCTAATCACACATATTGATTGTTT  1171