BAC Information

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BAC

Clone NameB6Ng01-207D19
Chromosome11 (Build37)
Map Location 99,488,743 - 99,489,659
singlet/doubletsinglet
Overlap geneA030010K20Rik
Upstream geneGsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477
Downstream gene1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207D19.bB6Ng01-207D19.g
ACCGA026447GA026448
length982861
definitionB6Ng01-207D19.b B6Ng01-207D19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaaatctgtagattgcttttggcaagatagccatt
ttttacaatgttggtcctgccaattcatgagcatggggagatctttccat
cttctgagatcttctttatttctttcttcggggacttgaagtttttatca
tacagatcctttcactcccttcgttagagtcacgcctgagatattttata
ttatttgtgggctattgagaaggggtgttgtt
gaattcttagctcacaacttagagattaatttcagcacagtgcaaacatt
agaaagacatggtagcaaacaagagaatgtaatgtgagccaggaggtgtt
gactgattctgcggaagatggtggctcacaagaattgtgtggtccatcct
gctaaatgatgccaaacagattccacgtgtcctacgggttcacatgcaag
aatggtacatatctgtacgtggagatgtgcctagattagggatctcagca
gcagcagggtgtggcacagcacatggggcgggggcaggtggagatgacac
aggtggggcggtagcaagtggtttggcagcagacctgaccacagactggt
ctcagacagcaacaggggcggcagcaggggcggcagcaggggctgcagca
ggggctgcagcaggggcggcagcaggggcggcagcagctagaaccacagc
agctggagctaccacaggaaggtcgacagcagctggaaatgcagcaactg
gggcggcagcaggtgggctggcagcacacagactggcagcactggggcct
gcagcaactgggtctgcagcagctagacacacagcagctgggcctgcagc
agctggacacacagcagctggggcggcagcaggtggtcctacagcaggtg
gtctggcagcagctgggctggcagcagccttggccacagctctcctcaga
gcagacagagccacaacaagagttgaccattgtgtcagaggtggagattc
tgggtgggtttctgagagagtgaagatgttgggtttggaagtcctccttg
ccccacgccccccttttatacctccgctgaacacctcatatgactacatt
aattatttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99488743_99489659
seq2: B6Ng01-207D19.g_63_920

seq1  GAATTCTTAGCTCACAACTTAGAGATTAATTTCAGCACAGTGCAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTCACAACTTAGAGATTAATTTCAGCACAGTGCAAACATT  50

seq1  AGAAAGACATGGTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACATGGTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTT  100

seq1  GACTGATTCTGCGGAAGATGGTGGCTCACAAGAATTGTGTGGTCCATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTCTGCGGAAGATGGTGGCTCACAAGAATTGTGTGGTCCATCCT  150

seq1  GCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAG  200

seq1  AATGGTACATATCTGTACGTGGAGATGTGCCTAGATTAGGGATCTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACATATCTGTACGTGGAGATGTGCCTAGATTAGGGATCTCAGCA  250

seq1  GCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACAC  300

seq1  AGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGT  350

seq1  CTCAGACAGCAACAGGGGCGGCAACAGGGGCGGCAGCAGGGACGGCAGCA  400
      ||||||||||||||||||                        ||||||||
seq2  CTCAGACAGCAACAGGGG------------------------CGGCAGCA  376

seq1  GGGGCGGCAGCAGGGGCTGCAGCAAGGGCTGCAGCAGGGGCGGCAGCAGG  450
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGCGGCAGCAGGGGCTGCAGCAGGGGCTGCAGCAGGGGCGGCAGCAGG  426

seq1  GGCGGCAGCAGCTAGAACCACAGCAGCTGGAGCTACCACAGGAAGGTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCAGCAGCTAGAACCACAGCAGCTGGAGCTACCACAGGAAGGTCGA  476

seq1  CAGCAGCTGGAAATGCAGCAACTGGGGCGGCAGCAGGTGGGCTGGCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGGAAATGCAGCAACTGGGGCGGCAGCAGGTGGGCTGGCAGCA  526

seq1  CACAGACTGGCAGCACTGGGGCCTGCAGCAACTGGGTCTGCAGCAGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGGCAGCACTGGGGCCTGCAGCAACTGGGTCTGCAGCAGCTAG  576

seq1  ACACACAGCAGCTGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGCAGCTGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGG  626

seq1  CAGCAGGTGGTCCTACAGCAGGTGGTCTGGCAGCAGCTGGGCTGGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTGGTCCTACAGCAGGTGGTCTGGCAGCAGCTGGGCTGGCAGCA  676

seq1  GCCTTGGCCACAGCTCTCCTCAGAGCAGACAGAGCCACAACAAGAGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCCACAGCTCTCCTCAGAGCAGACAGAGCCACAACAAGAGTTGA  726

seq1  CCATTGTGTCAGAGGTGGAGATTCTGGGTGGGTTTCTGAGAGAGTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGTCAGAGGTGGAGATTCTGGGTGGGTTTCTGAGAGAGTGAAGA  776

seq1  TGTTGGGTTTGGAAGT-CTCCTTGCCCCACG-CCCCCTTTTATACCT-CG  847
      |||||||||||||||| |||||||||||||| ||||||||||||||| ||
seq2  TGTTGGGTTTGGAAGTCCTCCTTGCCCCACGCCCCCCTTTTATACCTCCG  826

seq1  CTGAACACCTCATATGACTACA-TCATTATTTCCTTGTTAGTATTTTCCT  896
      |||||||||||||||||||||| | |||||||                  
seq2  CTGAACACCTCATATGACTACATTAATTATTT------------------  858

seq1  TCTTGGAAAAGTTAATTATTT  917
                           
seq2  ---------------------  858