BAC Information

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BAC

Clone NameB6Ng01-207F16
Chromosome11 (Build37)
Map Location 44,671,646 - 44,824,293
singlet/doubletdoublet
Overlap geneEbf1
Upstream geneIl12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207F16.bB6Ng01-207F16.g
ACCGA026532GA026533
length1,1001,040
definitionB6Ng01-207F16.b B6Ng01-207F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,823,235 - 44,824,293)(44,671,646 - 44,672,672)
sequence
gaattcatctgtgatgggtcttctgtgaagcaagaggaatcatggtaggt
tttttagtgtgggtttgtgtcttgagcagcctctgatgcctgcagccagc
agggttccacaagaacctgatcccactttcccaaacccctatggccggta
atttcaatccttggtttatctcatagtgaagtctcaaggtattgatcata
gttggctattataccataaggactgctcaagtgacaccttcagtaacttg
gactttttgccagaaatcccaaaatgacactttaaagggacaagaatgta
gatatatatatggtttatgagtatcacttgcatgtatatatggacacccc
atatgcttatgtgcagtgcaagaggaggccagaagagggaactgaatccg
tgttaaatacgattatgatccatcatgtaagtgctaggaacttaatctgg
gtcctctacaagagcagccagtactcgtaagtactaagccatctctcaag
ccactaacacttatggttttgaatcattgcttctaaattggatttcaaca
tttataaagtgaaacatcatcaactccaaatgctggagaaaagaaatcta
ccaagtcctaaagtgaccaaaggatgtgaagaccatacattctggtgagg
gcaaattgtctggagcaactctggccatatgtttcacttcagatgcagca
tgtgattgctggtggctgtatccagcccctgcctccccttcactccctcc
cttctcccatccctccctcctttttctctctcatggataaattctttctg
tctctctctgtctatctatgtgtgtctctctgtctctcccttctctctgc
ctgtcagcttaaccccaagggaattttttggccagaattaaataacaccc
acccgcctttggtgaaacatctcagggacccgtgaggtttgtgagttttg
tccagaaggctctgcgtggaagggcaccctcagcctgatttggcttcctt
tggcatcctaacacaccaaaccccatgtgctaaggtgccccataaaatat
gctgatgaaatggaaagtccgttgttgccccccacaaagccccctgtggg

gaattctttgttcagttctgagccccattttttaagggggttatttgact
tgagtgcggacaaagtacttgaataagagaacaagggactgctattataa
taggagaaaagggaccagggtgcaaaacctagtgccttggagaggaagga
tcctaagagaacacagcctattatccagataggtggcatatgcctttaat
cccagcaccctggaggcagaggcaggcagatcccgagcaatccagcatat
actcttttcttgagaaccttatagaccatcgtacagaataacatgtgtgc
acaaactagcatctcacattggggtattcaaggacattgtgtcacccatc
cagggactcttgattaagacgacagcagtagatgacgtttaagccccttc
ttcatttagcatttttacttagtaaataataatggccaatttaggttata
aagtggaggagattttagagctcactctcatcagtgtctcacgttgaaac
tgacgctgtcccagagtgacacgtcgtggggagggtgagtgacctgtgag
cacctaagcacctgcagaaaatctaaatggtgtcattcttcatctgtgag
actgcttaatttcattttccaccagcaaccttatgatatcccgagaagca
gagcttaataaagtgttgggctctattttgcattctgatttcaatatgat
gaatctcttttttatatttttttatggaacagaacatacagacttattgg
attgtccataatatgaactatggaataattgggagctcatgagattactg
tcagtactctgtgggcacaatactttcctggtcattttcattggaagact
ggttccctagctctaaatccaaattaaaggggtcactttgtttcatatct
gagcccatcctgtgaggcgtgttggagtgcagtgattgttgtgcaatgga
aagccactgctcaaatggaaatttaattatcccagtgtcgaagccccaga
gatggcaggcagcacatggagaatgctgaagatttggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44823235_44824293
seq2: B6Ng01-207F16.b_36_1135 (reverse)

seq1  CCCACA-GTGACTTTGTGGGGCACAACGAC------TCCAATTCA-CAGC  42
      |||||| | | ||||||||||  |||| ||      |||| |||| ||||
seq2  CCCACAGGGGGCTTTGTGGGGGGCAACAACGGACTTTCCATTTCATCAGC  50

seq1  ATATTCT---GGGCACC-TAGCA---TGGGTTTGGTGTGTTA-GATGCTA  84
      ||||| |   ||||||| |||||    ||||||||||||||| ||||| |
seq2  ATATTTTATGGGGCACCTTAGCACATGGGGTTTGGTGTGTTAGGATGCCA  100

seq1  A--GGAGCC-AATCA-GCTGA-GGTGCC--TTCACGCAGAGCC-TCT-GA  125
      |  | |||| ||||| ||||| ||||||  | ||||||||||| ||| ||
seq2  AAGGAAGCCAAATCAGGCTGAGGGTGCCCTTCCACGCAGAGCCTTCTGGA  150

seq1  C-AAACTCACAAA-CTCAC-GGTCCCTGA-ATG-TTCA-CAAAGGCGG--  167
      | ||||||||||| ||||| ||||||||| ||| |||| |||||||||  
seq2  CAAAACTCACAAACCTCACGGGTCCCTGAGATGTTTCACCAAAGGCGGGT  200

seq1  TGGTG-TATTTAAATCTGGC---AAAATT-CCTTGGGGTTAAGCTGACAG  212
       |||| ||||||| ||||||   |||||| ||||||||||||||||||||
seq2  GGGTGTTATTTAATTCTGGCCAAAAAATTCCCTTGGGGTTAAGCTGACAG  250

seq1  GCAGAGAGAA-GGAGAGACAGAGAGACACACATAGATAGACAGAGAGAGA  261
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAAGGGAGAGACAGAGAGACACACATAGATAGACAGAGAGAGA  300

seq1  CAGAAAGAATTTATCCATGAGAGAG-AAAAGGAGGGAGGGATGGGAGAAG  310
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGAAAGAATTTATCCATGAGAGAGAAAAAGGAGGGAGGGATGGGAGAAG  350

seq1  GGAGGGAGTGAAGGGGAGGCAGGGGCTGGATACAGCCACCAGCAATCACA  360
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTGAAGGGGAGGCAGGGGCTGGATACAGCCACCAGCAATCACA  400

seq1  TGCTGCATCTGAAGTG-AACATATGGCCAGAGTTGCTCCAGACAATTTGC  409
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTGCATCTGAAGTGAAACATATGGCCAGAGTTGCTCCAGACAATTTGC  450

seq1  CCTCACCAGAATGTATGGTCTTCACATCCTTTGGTCACTTTAGGACTTGG  459
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAGAATGTATGGTCTTCACATCCTTTGGTCACTTTAGGACTTGG  500

seq1  TAGATTTCTTTTCTCCAGCATTTGGAGTTGATGATGTTTCACTTTATAAA  509
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTTTTCTCCAGCATTTGGAGTTGATGATGTTTCACTTTATAAA  550

seq1  TGTTGAAATCCAATTTAGAAGCAATGATTCAAAACCATAAGTGTTAGTGG  559
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATCCAATTTAGAAGCAATGATTCAAAACCATAAGTGTTAGTGG  600

seq1  CTTGAGAGATGGCTTAGTACTTACGAGTACTGGCTGCTCTTGTAGAGGAC  609
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGATGGCTTAGTACTTACGAGTACTGGCTGCTCTTGTAGAGGAC  650

seq1  CCAGATTAAGTTCCTAGCACTTACATGATGGATCATAATCGTATTTAACA  659
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTAAGTTCCTAGCACTTACATGATGGATCATAATCGTATTTAACA  700

seq1  CGGATTCAGTTCCCTCTTCTGGCCTCCTCTTGCACTGCACATAAGCATAT  709
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTCAGTTCCCTCTTCTGGCCTCCTCTTGCACTGCACATAAGCATAT  750

seq1  GGGGTGTCCATATATACATGCAAGTGATACTCATAAACCATATATATATC  759
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTCCATATATACATGCAAGTGATACTCATAAACCATATATATATC  800

seq1  TACATTCTTGTCCCTTTAAAGTGTCATTTTGGGATTTCTGGCAAAAAGTC  809
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTTGTCCCTTTAAAGTGTCATTTTGGGATTTCTGGCAAAAAGTC  850

seq1  CAAGTTACTGAAGGTGTCACTTGAGCAGTCCTTATGGTATAATAGCCAAC  859
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACTGAAGGTGTCACTTGAGCAGTCCTTATGGTATAATAGCCAAC  900

seq1  TATGATCAATACCTTGAGACTTCACTATGAGATAAACCAAGGATTGAAAT  909
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAATACCTTGAGACTTCACTATGAGATAAACCAAGGATTGAAAT  950

seq1  TACCGGCCATAGGGGTTTGGGAAAGTGGGATCAGGTTCTTGTGGAACCCT  959
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGCCATAGGGGTTTGGGAAAGTGGGATCAGGTTCTTGTGGAACCCT  1000

seq1  GCTGGCTGCAGGCATCAGAGGCTGCTCAAGACACAAACCCACACTAAAAA  1009
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGCAGGCATCAGAGGCTGCTCAAGACACAAACCCACACTAAAAA  1050

seq1  ACCTACCATGATTCCTCTTGCTTCACAGAAGACCCATCACAGATGAATTC  1059
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCATGATTCCTCTTGCTTCACAGAAGACCCATCACAGATGAATTC  1100

seq1: chr11_44671646_44672672
seq2: B6Ng01-207F16.g_69_1108

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAAGGGGGTTATTTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAAGGGGGTTATTTGACT  50

seq1  TGAGTGCGGACAAAGTACTTGAATAAGAGAACAAGGGACTGCTATTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCGGACAAAGTACTTGAATAAGAGAACAAGGGACTGCTATTATAA  100

seq1  TAGGAGAAAAGGGACCAGGGTGCAAAACCTAGTGCCTTGGAGAGGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAAAGGGACCAGGGTGCAAAACCTAGTGCCTTGGAGAGGAAGGA  150

seq1  TCCTAAGAGAACACAGCCTATTATCCAGATAGGTGGCATATGCCTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAGAACACAGCCTATTATCCAGATAGGTGGCATATGCCTTTAAT  200

seq1  CCCAGCACCCTGGAGGCAGAGGCAGGCAGATCCCGAGCAATCCAGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCCTGGAGGCAGAGGCAGGCAGATCCCGAGCAATCCAGCATAT  250

seq1  ACTCTTTTCTTGAGAACCTTATAGACCATCGTACAGAATAACATGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTCTTGAGAACCTTATAGACCATCGTACAGAATAACATGTGTGC  300

seq1  ACAAACTAGCATCTCACATTGGGGTATTCAAGGACATTGTGTCACCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAGCATCTCACATTGGGGTATTCAAGGACATTGTGTCACCCATC  350

seq1  CAGGGACTCTTGATTAAGACGACAGCAGTAGATGACGTTTAAGCCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTCTTGATTAAGACGACAGCAGTAGATGACGTTTAAGCCCCTTC  400

seq1  TTCATTTAGCATTTTTACTTAGTAAATAATAATGGCCAATTTAGGTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGCATTTTTACTTAGTAAATAATAATGGCCAATTTAGGTTATA  450

seq1  AAGTGGAGGAGATTTTAGAGCTCACTCTCATCAGTGTCTCACGTTGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGAGATTTTAGAGCTCACTCTCATCAGTGTCTCACGTTGAAAC  500

seq1  TGACGCTGTCCCAGAGTGACACGTCGTGGGGAGGGTGAGTGACCTGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCTGTCCCAGAGTGACACGTCGTGGGGAGGGTGAGTGACCTGTGAG  550

seq1  CACCTAAGCACCTGCAGAAAATCTAAATGGTGTCATTCTTCATCTGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAGCACCTGCAGAAAATCTAAATGGTGTCATTCTTCATCTGTGAG  600

seq1  ACTGCTTAATTTCATTTTCCACCAGCAACCTTATGATATCCCGAGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTAATTTCATTTTCCACCAGCAACCTTATGATATCCCGAGAAGCA  650

seq1  GAGCTTAATAAAGTGTTGGGCTCTATTTTGCATTCTGATTTCAATATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAATAAAGTGTTGGGCTCTATTTTGCATTCTGATTTCAATATGAT  700

seq1  GAATCTC-TTTTTATATTTTTTTATGGAACAGAACATACAGACTTATTGG  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTTTTTTATATTTTTTTATGGAACAGAACATACAGACTTATTGG  750

seq1  ATTGTCCATAATATGAACTATGGAATAATTGGGAGCTCATGAGATTACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCATAATATGAACTATGGAATAATTGGGAGCTCATGAGATTACTG  800

seq1  TCAGTACTCTGTGGGCACAATACTTTCCTGGTCATTTTCATTTGAAGACT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAGTACTCTGTGGGCACAATACTTTCCTGGTCATTTTCATTGGAAGACT  850

seq1  GG-TCCCTAGCTCTAAATCCAAATT-AAGGGGTCACTT--GTTCATATCT  895
      || |||||||||||||||||||||| ||||||||||||   |||||||||
seq2  GGTTCCCTAGCTCTAAATCCAAATTAAAGGGGTCACTTTGTTTCATATCT  900

seq1  GAGCCCATCCTGTGAGGCGTGTTGGAGTGCAGTGATTG-TGTGCAATGG-  943
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  GAGCCCATCCTGTGAGGCGTGTTGGAGTGCAGTGATTGTTGTGCAATGGA  950

seq1  AAGCCACTGCTCAAATG--AAATTAATTATCCCAGTGT-GA--GCCCAGA  988
      |||||||||||||||||  || |||||||||||||||| ||   ||||||
seq2  AAGCCACTGCTCAAATGGAAATTTAATTATCCCAGTGTCGAAGCCCCAGA  1000

seq1  GGATGGCAGGCAGCACATGGAG-ATGCTG-AGATTGGGAGA  1027
       ||||||||||||||||||||| |||||| ||||| |||||
seq2  -GATGGCAGGCAGCACATGGAGAATGCTGAAGATTTGGAGA  1040