BAC Information

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BAC

Clone NameB6Ng01-207J11
Chromosome11 (Build37)
Map Location 78,723,279 - 78,883,281
singlet/doubletdoublet
Overlap geneNos2, Lgals9, Ksr1
Upstream geneSez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik
Downstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207J11.bB6Ng01-207J11.g
ACCGA026696GA026697
length591238
definitionB6Ng01-207J11.b B6Ng01-207J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,723,279 - 78,723,873)(78,883,044 - 78,883,281)
sequence
tgggctcaaaggcatggccatcatggctagctagtattttcttgatctct
tgacgaagtctttaatgaggcccaccgtttcagtcttttcttttatggct
gtgctctgtgtgtcctgcctaaaccattgttaacctatgctggggccctg
aaaacggtgctccctgtttgcttcataaagctctctttgcctttacccct
gcgcgtgtgatccctctggaatggagttttgttttaggtgtgaggtaggg
ggtcaaagctcaatagattccatctggaaagcatccattctagaaccatt
taatgaaaagatcatctagcctcccatgagcggatacagtgtggagctat
ggtctcacttatttggttggggtttttggtgctgaggttggaaaagctgg
cgatttccaagaaacttccagaaaaagaaagaaggatcccagatcggagt
taccatgttttcatcactctttgtacttcacaggccacacttatgatcgg
gagggaatctgtaacccacaggcgactccggccagtttgtgctggcagtg
gtggcaactgggaatgtcccatctatttccagggtcccact
ttcaggatgtctgacagtgggccggggatgcagctcagtgataggtaggg
ggctgttccctagaaagagcagctggcaaagctaaagggacagctagcct
gctgcggtaggaacagagacatcctttctccccctactcccccctccccc
ccccccgcctctgagagacctcccccagacatacacacactgagtccctc
aacacctgaagaaaggaaggaagggagggagggaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78723279_78723873
seq2: B6Ng01-207J11.b_44_639

seq1  GAATTCTGGGCTCAAAGGCATGGCCATCATGGCTAGCTAGTATTTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTCAAAGGCATGGCCATCATGGCTAGCTAGTATTTTCTTG  50

seq1  ATCTCTTGACGAAGTCTTTAATGAGGCCCACCGTTTCAGTCTTTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGACGAAGTCTTTAATGAGGCCCACCGTTTCAGTCTTTTCTTTT  100

seq1  ATGGCTGTGCTCTGTGTGTCCTGCCTAAACCATTGTTAACCTATGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGCTCTGTGTGTCCTGCCTAAACCATTGTTAACCTATGCTGGG  150

seq1  GCCCTGAAAACGGTGCTCCCTGTTTGCTTCATAAAGCTCTCTTTGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAAACGGTGCTCCCTGTTTGCTTCATAAAGCTCTCTTTGCCTTT  200

seq1  ACCCCTGCGCGTGTGATCCCTCTGGAATGGAGTTTTGTTTTAGGTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCGCGTGTGATCCCTCTGGAATGGAGTTTTGTTTTAGGTGTGAG  250

seq1  GTAGGGGGTCAAAGCTCAATAGATTCCATCTGGAAAGCATCCATTCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGGTCAAAGCTCAATAGATTCCATCTGGAAAGCATCCATTCTAGA  300

seq1  ACCATTTAATGAAAAGATCATCTAGCCTCCCATGAGCGGATACAGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAATGAAAAGATCATCTAGCCTCCCATGAGCGGATACAGTGTGG  350

seq1  AGCTATGGTCTCACTTATTTGGTTGGGGTTTTTGGTGCTGAGGTTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGTCTCACTTATTTGGTTGGGGTTTTTGGTGCTGAGGTTGGAAA  400

seq1  AGCTGGCGATTTCCAAGAAACTTCCAGAAAAAGAAAGAAGGATCCCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCGATTTCCAAGAAACTTCCAGAAAAAGAAAGAAGGATCCCAGAT  450

seq1  CGGAGTTACCATGTTTTCATCACTCTTTGTACTTCACAGGCCACACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTACCATGTTTTCATCACTCTTTGTACTTCACAGGCCACACTTAT  500

seq1  GATCGGGAGGGAATCTGTAACCCACAGGCGACTCCGGCCAGTTTGTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGGAGGGAATCTGTAACCCACAGGCGACTCCGGCCAGTTTGTGCTG  550

seq1  GCAGTGGTGGCAACTGGGAAGGTCCCATCTATTTCCA-GGTCCCAC  595
      |||||||||||||||||||| |||||||||||||||| ||||||||
seq2  GCAGTGGTGGCAACTGGGAATGTCCCATCTATTTCCAGGGTCCCAC  596

seq1: chr11_78883044_78883281
seq2: B6Ng01-207J11.g_72_309 (reverse)

seq1  TTCCTCCCTCCCTCCCTTCCTTCCTTTCTTCAGGTGTTGAGGGACTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTCCCTCCCTTCCTTCCTTTCTTCAGGTGTTGAGGGACTCAGT  50

seq1  GTGTGTATGTCTGGGGGAGGTCTCTCAGAGGCGGGGGGGGGGGAGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTCTGGGGGAGGTCTCTCAGAGGCGGGGGGGGGGGAGGGGGG  100

seq1  AGTAGGGGGAGAAAGGATGTCTCTGTTCCTACCGCAGCAGGCTAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGGGAGAAAGGATGTCTCTGTTCCTACCGCAGCAGGCTAGCTGTC  150

seq1  CCTTTAGCTTTGCCAGCTGCTCTTTCTAGGGAACAGCCCCCTACCTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTTTGCCAGCTGCTCTTTCTAGGGAACAGCCCCCTACCTATCA  200

seq1  CTGAGCTGCATCCCCGGCCCACTGTCAGACATCCTGAA  238
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGCATCCCCGGCCCACTGTCAGACATCCTGAA  238