BAC Information

Click to search

BAC

Clone NameB6Ng01-207J23
Chromosome11 (Build37)
Map Location 94,338,682 - 94,480,390
singlet/doubletdoublet
Overlap geneSpata20, Epn3, Mycbpap, Rsad1, BC018371, Chad
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g
Downstream geneLrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207J23.bB6Ng01-207J23.g
ACCGA026720GA026721
length1,131898
definitionB6Ng01-207J23.b B6Ng01-207J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,338,682 - 94,339,808)(94,479,509 - 94,480,390)
sequence
gaattccttcctctgaaactatttacaagatgccactgccctgttcctgc
ctgatagcagaggggaaaggagagacgcaaaaggcagggaagtggaggaa
aacaccagatgcacactccttcatagccatgcctccacctcctggcaaga
aacagtctcagtgatctttgttgtcattctgaagaccctagggagaaact
ggtatgctcaggggtgtcaggctaaactcctaccaactctgtccctccaa
cagccatccctagaaggctaaaggttcctgctttaccatctcattcatga
gggtcggtgggaccacagaggcaagagggctacacgaactgcccagactg
ttccaaatccagtgttagggttgccaaaaaggccacctgtgtctcaccat
gccgtactttcccttcctgctgccctcaagccaggctccacgtgtccagt
ctttgacttgctggcaaggctgagtgggctccagtaagaaagaggccagc
tgacctcattggccagagtgctaatcccctccagatgggctggtggcttg
caccaagggcccgctgcccagactgagacaactctggtcccagtgaccat
gggtaggtgtgcatgtgtgacaatctcctgtctctagtttcttacctgct
cccttcctttctacgactgacatccccctagcagcaccccttcccccatc
cgttcttcttagcctctctggcggcttcttctggctatctgtgatgtttg
gcttggaggctaggacgatgctcaagctcagtagacctccgagaaacagt
ttctatgcaacctcacaaccctatcgttctacactttctccttccaagcc
tgtctccaagccgccttcctgggatggcagctatgtggggtcctcggtga
aagatttatttgccaaggatgagatttaagagcatctcccaacatttcag
agggacaggggccagcttctttcttgtagcgggagttggatcgaattggg
ggaaaggctttctacaccaccgggatgtttgcaatggtgaaaagagttct
tcctgaatcatctggcaggaagaagagagcatgacctctgcaagatgctg
gaatgaatggttaccttctagaacgtcgtac
gaattcacttctgcaacctccaggatggctcaccaagtgtgttactgatg
gtctcttctgtttgtggattcttgacatcttattcaaagaccccaaaaaa
aagcacacacaaatagcaaagcagcaaggattcttttgtgggttcatgaa
taggacaagttggttggcttaggggcagaattcaggtggttttctatgtt
gatagataggttatggtagcttttgttatgtcctgtggtggtttgaatgg
gtatggcccctacaggcttatgtgtttgaatgcttggcccatagggtctg
gcaccattagaaggtgtggagccttgttggaagaagtgtgtcattgtaga
gacagtctttgaagtctcttaaactcaagctatgcccagtgtggcacaca
gtctccttctgctgcctgcagatcacgacatagaactctcagttggacta
aacctctaaaaatgtaagccagccagtcccacttaagtgttgtccttttt
aagacttggcggcgtggtcatggtgtctcttcatagcaataaaatcttaa
ctaagatgtgtccctcttcatgatgcatctgatttgagtcatatgcatgc
ctaattgtgtacaggcataaaatggtaagtaggggaaatctgaaccccaa
atttgaacagacagtttgccttactgcgaatgcatttggaaatcagtctc
ggctggtttagccagttttcccttagaatgtgcttgggtacacacaatga
aagtacaaagggttactaggaagccatagattggagtcacccaactgcct
ttgcttggagaggagtgtacagttagcttacattgcaggtgggggtttcc
aggtttgctggatatatattttttcggggagagagggtgtgttatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94338682_94339808
seq2: B6Ng01-207J23.b_48_1178

seq1  GAATTCCTTCCTCTGAAACTATTTACAAGATGCCACTGCCCTGTTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCTGAAACTATTTACAAGATGCCACTGCCCTGTTCCTGC  50

seq1  CTGATAGCAGAGGGGAAAGGAGAGACGCAAAAGGCAGGGAAGTGGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGCAGAGGGGAAAGGAGAGACGCAAAAGGCAGGGAAGTGGAGGAA  100

seq1  AACACCAGATGCACACTCCTTCATAGCCATGCCTCCACCTCCTGGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGATGCACACTCCTTCATAGCCATGCCTCCACCTCCTGGCAAGA  150

seq1  AACAGTCTCAGTGATCTTTGTTGTCATTCTGAAGACCCTAGGGAGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTCAGTGATCTTTGTTGTCATTCTGAAGACCCTAGGGAGAAACT  200

seq1  GGTATGCTCAGGGGTGTCAGGCTAAACTCCTACCAACTCTGTCCCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCTCAGGGGTGTCAGGCTAAACTCCTACCAACTCTGTCCCTCCAA  250

seq1  CAGCCATCCCTAGAAGGCTAAAGGTTCCTGCTTTACCATCTCATTCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCCCTAGAAGGCTAAAGGTTCCTGCTTTACCATCTCATTCATGA  300

seq1  GGGTCGGTGGGACCACAGAGGCAAGAGGGCTACACGAACTGCCCAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGGTGGGACCACAGAGGCAAGAGGGCTACACGAACTGCCCAGACTG  350

seq1  TTCCAAATCCAGTGTTAGGGTTGCCAAAAAGGCCACCTGTGTCTCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATCCAGTGTTAGGGTTGCCAAAAAGGCCACCTGTGTCTCACCAT  400

seq1  GCCGTACTTTCCCTTCCTGCTGCCCTCAAGCCAGGCTCCACGTGTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTACTTTCCCTTCCTGCTGCCCTCAAGCCAGGCTCCACGTGTCCAGT  450

seq1  CTTTGACTTGCTGGCAAGGCTGAGTGGGCTCCAGTAAGAAAGAGGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTGCTGGCAAGGCTGAGTGGGCTCCAGTAAGAAAGAGGCCAGC  500

seq1  TGACCTCATTGGCCAGAGTGCTAATCCCCTCCAGATGGGCTGGTGGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTGGCCAGAGTGCTAATCCCCTCCAGATGGGCTGGTGGCTTG  550

seq1  CACCAAGGGCCCGCTGCCCAGACTGAGACAACTCTGGTCCCAGTGACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGGCCCGCTGCCCAGACTGAGACAACTCTGGTCCCAGTGACCAT  600

seq1  GGGTAGGTGTGCATGTGTGACAATCTCCTGTCTCTAGTTTCTTACCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTGTGCATGTGTGACAATCTCCTGTCTCTAGTTTCTTACCTGCT  650

seq1  CCCTTCCTTTCTACGACTGACATCCCCCTAGCAGCACCCCTTCCCCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTTCTACGACTGACATCCCCCTAGCAGCACCCCTTCCCCCATC  700

seq1  CGTTCTTCTTAGCCTCTCTGGCGGCTTCTTCTGGCTATCTGTGATGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTCTTAGCCTCTCTGGCGGCTTCTTCTGGCTATCTGTGATGTTTG  750

seq1  GCTTGGAGGCTAGGACGATGCTCAAGCTCAGTAGACCTCCGAGAAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGGCTAGGACGATGCTCAAGCTCAGTAGACCTCCGAGAAACAGT  800

seq1  TTCTATGCAACCTCACAACCCTATCGTTCTACACTTTCTCCTTCCAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGCAACCTCACAACCCTATCGTTCTACACTTTCTCCTTCCAAGCC  850

seq1  TGTCTCCAAGCCGCCTTCCT-GGATGGCAGCTATGTGGGGTCCTCGGTG-  898
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TGTCTCCAAGCCGCCTTCCTGGGATGGCAGCTATGTGGGGTCCTCGGTGA  900

seq1  AAGATTTATTTGCCAAGGATGAGATTTAAGAGCATCTCCCAACA-TTCAG  947
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGATTTATTTGCCAAGGATGAGATTTAAGAGCATCTCCCAACATTTCAG  950

seq1  A-GGACAGGGGCCAGCTTCTT--CTGTAGCGGGAGTTGGATCGAATT-GG  993
      | |||||||||||||||||||   ||||||||||||||||||||||| ||
seq2  AGGGACAGGGGCCAGCTTCTTTCTTGTAGCGGGAGTTGGATCGAATTGGG  1000

seq1  GGAAGGGCTTCTAACACAAC--GGATG-TTGCAAATGTG-AAAGAGTCCT  1039
      |||| |||||   |||| ||  ||||| ||||||  ||| ||||||| | 
seq2  GGAAAGGCTTTCTACACCACCGGGATGTTTGCAATGGTGAAAAGAGTTC-  1049

seq1  TTCCTGGACCATCCTGCAGGAAGAAGAAGAGCATGACCTCCTGCAGAGAT  1089
      |||||| | ||||  ||||||||||| |||||||||||| ||||| ||||
seq2  TTCCTGAATCATCTGGCAGGAAGAAG-AGAGCATGACCT-CTGCA-AGAT  1096

seq1  GCTGGGATTGAATGGGTACCCTCCAAGAAACGTCGTAC  1127
      ||| ||| ||||||| |||| || |   ||||||||||
seq2  GCT-GGAATGAATGGTTACCTTCTA--GAACGTCGTAC  1131

seq1: chr11_94479509_94480390
seq2: B6Ng01-207J23.g_67_964 (reverse)

seq1  TGCAT-ACACA-CCTCTCTCCC-----AAAAATATATTCAGC-AACCTGG  42
      ||||| ||||| ||||||||||     ||| |||||| |||| |||||||
seq2  TGCATAACACACCCTCTCTCCCCGAAAAAATATATATCCAGCAAACCTGG  50

seq1  -GACCCCCACCTGC-ATGT-AGCTAACTGTACACTCCTCTCCAAGCAAA-  88
        |||||||||||| |||| ||||||||||||||||||||||||||||| 
seq2  AAACCCCCACCTGCAATGTAAGCTAACTGTACACTCCTCTCCAAGCAAAG  100

seq1  GCAGTTGGGTGACTCCAATCTATGGCTTCCTAGTAACCCTTTGTAC-TTC  137
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAGTTGGGTGACTCCAATCTATGGCTTCCTAGTAACCCTTTGTACTTTC  150

seq1  A-TGTGTGTACCCAAGCACATTCTAAGGG-AAACTGGCTAAACCAGCCGA  185
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGTGTGTACCCAAGCACATTCTAAGGGAAAACTGGCTAAACCAGCCGA  200

seq1  GACTGATTTCC-AATGCATTCGCAGTAAGGCAAACTGTCTGTTCAAATTT  234
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTTCCAAATGCATTCGCAGTAAGGCAAACTGTCTGTTCAAATTT  250

seq1  GGGGTTCAGATTTCCCCTACTTACCATTTTATGCCTGTACACAATTAGGC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCAGATTTCCCCTACTTACCATTTTATGCCTGTACACAATTAGGC  300

seq1  ATGCATATGACTCAAATCAGATGCATCATGAAGAGGGACACATCTTAGTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATGACTCAAATCAGATGCATCATGAAGAGGGACACATCTTAGTT  350

seq1  AAGATTTTATTGCTATGAAGAGACACCATGACCACGCCGCCAAGTCTTAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTATTGCTATGAAGAGACACCATGACCACGCCGCCAAGTCTTAA  400

seq1  AAAGGACAACACTTAAGTGGGACTGGCTGGCTTACATTTTTAGAGGTTTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAACACTTAAGTGGGACTGGCTGGCTTACATTTTTAGAGGTTTA  450

seq1  GTCCAACTGAGAGTTCTATGTCGTGATCTGCAGGCAGCAGAAGGAGACTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACTGAGAGTTCTATGTCGTGATCTGCAGGCAGCAGAAGGAGACTG  500

seq1  TGTGCCACACTGGGCATAGCTTGAGTTTAAGAGACTTCAAAGACTGTCTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACACTGGGCATAGCTTGAGTTTAAGAGACTTCAAAGACTGTCTC  550

seq1  TACAATGACACACTTCTTCCAACAAGGCTCCACACCTTCTAATGGTGCCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGACACACTTCTTCCAACAAGGCTCCACACCTTCTAATGGTGCCA  600

seq1  GACCCTATGGGCCAAGCATTCAAACACATAAGCCTGTAGGGGCCATACCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTATGGGCCAAGCATTCAAACACATAAGCCTGTAGGGGCCATACCC  650

seq1  ATTCAAACCACCACAGGACATAACAAAAGCTACCATAACCTATCTATCAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACCACCACAGGACATAACAAAAGCTACCATAACCTATCTATCAA  700

seq1  CATAGAAAACCACCTGAATTCTGCCCCTAAGCCAACCAACTTGTCCTATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAACCACCTGAATTCTGCCCCTAAGCCAACCAACTTGTCCTATT  750

seq1  CATGAACCCACAAAAGAATCCTTGCTGCTTTGCTATTTGTGTGTGCTTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCCACAAAAGAATCCTTGCTGCTTTGCTATTTGTGTGTGCTTTT  800

seq1  TTTTGGGGTCTTTGAATAAGATGTCAAGAATCCACAAACAGAAGAGACCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGTCTTTGAATAAGATGTCAAGAATCCACAAACAGAAGAGACCA  850

seq1  TCAGTAACACACTTGGTGAGCCATCCTGGAGGTTGCAGAAGTGAATTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACACACTTGGTGAGCCATCCTGGAGGTTGCAGAAGTGAATTC  898