BAC Information

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BAC

Clone NameB6Ng01-208E01
Chromosome11 (Build37)
Map Location 96,150,582 - 96,272,463
singlet/doubletdoublet
Overlap geneHoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242
Upstream geneMyst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8
Downstream geneOTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208E01.bB6Ng01-208E01.g
ACCGA027182GA027183
length693966
definitionB6Ng01-208E01.b B6Ng01-208E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,150,582 - 96,151,279)(96,271,502 - 96,272,463)
sequence
gaattctgttggtgtttttcacacagtctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctctctctaatcctgtg
tgtacggcctgaccgaaagcgaggccgccagacctacacgcgctaccaca
ccctggagctggagaaagaatttcactacaatcgctacctgactcggcgg
aggcgcctcgagatcgcgcacactctctgcctcaccgaaagacagatcaa
gatctggtttcagaaccggcgcatgaagtggaaaaaggagaactaaacct
caggaccgggaaccaccggccaggacaaggcggaagcggaggaggaggag
gaagagtgagggacagatgaagccaaaaggaggaaagctaagagagggag
aacttttttatgggaactgaagcatgaaactcaaataaaggtgcacacta
tttaaatgaagaggtctaaaaataataaggaaagagaagggtgcaatttg
ggtttcataacactgtaaaaaaatatactacctatgggaaagtgtgttgt
ttgtttttgttctttatcggaagtcattatctacctagtctgtggtatta
tggaatgtgtctacccttatcgatgtcgttagttaggtctttatacattt
ttgcagatttgtattctctatcagaggtatcttttgtgaactg
gaattcctgccttgaagaaaatcttcctgttagatccttggggtaacttt
tttttaaaaaaaggaagtatgaggtcatgcctcgtgagaagttactggaa
agagcaattagttcccaccattcagacaggatccgctagttctctgaact
tggggtcaagtacataaacggttcactctgaatggatcctacctggctaa
ggaagagaatcccagagaccaagcgacttctctaatgttgcacagcataa
taaagatgaagccaggacttgaaccctcttggcactgagcatacgaaaag
gcaggatcacatggtctaacccagcgtcctctcttactgtaggatcagat
agagcagaaagaggccagaagtgtctatgggtgactgtttcctggagggt
gacatgggaagaggctcttctttgggacaggctatttcccaagatgctct
gaggttgctggcttccgagccccctatctggatttctccttgttgtgcac
tgataagctatcaagcccgacacacggtccactgaggaagtgggagccag
ggagaccccgaggccatcaggaaaagactggcagaaaacaaaacagcaca
aagcaaggcatcctgggggtaaacctgccgactgaacttctatgaagcag
gaagacaaagaagagtcaagactgggagaaaactggagagagaaaaacag
gaaagacagaaagacccacagaaccaccgaaatagaacagcgagagagtt
tccctctcctttctttggtgtttaaataatttatttattggtgttttgcc
ttcatggggggtgttgtgtgaaggtgttggttccccgggaactacagtta
caggatggttgtaatctgccctggtgggtgctgggaattgaacccagatc
ttgtgggaagagcccttgtggctcttaaccgctgtgcctatctcgtccag
ccccttcctttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96150582_96151279
seq2: B6Ng01-208E01.b_45_737

seq1  GAATTCTGTTGGTGTTTTTCACACAGTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  GAATTCTGTTGGTGTTTTTCACACAG----TCTCTCTCTCTCTCTCTCTC  46

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATCC  96

seq1  TGTGTGTAGGGCCTGACCGAAAGCGAGGCCGCCAGACCTACACGCGCTAC  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACGGCCTGACCGAAAGCGAGGCCGCCAGACCTACACGCGCTAC  146

seq1  CAGACCCTGGAGCTGGAGAAAGAATTTCACTACAATCGCTACCTGACTCG  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTGGAGCTGGAGAAAGAATTTCACTACAATCGCTACCTGACTCG  196

seq1  GCGGAGGCGCATCGAGATCGCGCACACGCTCTGCCTCACCGAAAGACAGA  250
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  GCGGAGGCGCCTCGAGATCGCGCACACTCTCTGCCTCACCGAAAGACAGA  246

seq1  TCAAGATCTGGTTTCAGAACCGGCGCATGAAGTGGAAAAAGGAGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAAGATCTGGTTTCAGAACCGGCGCATGAAGTGGAAAAAGGAGAACTAA  296

seq1  ACCTCAGGACCGGGAACCACCGGCCAGGACAAGGCGGAAGCGGAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGACCGGGAACCACCGGCCAGGACAAGGCGGAAGCGGAGGAGGA  346

seq1  GGAGGAAGAGTGAGGGACAGAGAAAGCCAAGAGGAGGAAAGCGAAGAGAG  400
      |||||||||||||||||||||  ||||||| ||||||||||| |||||||
seq2  GGAGGAAGAGTGAGGGACAGATGAAGCCAAAAGGAGGAAAGCTAAGAGAG  396

seq1  GGAGAACCCAATTATGGGAACTGAAGCATGAAACTCAAATAAAGGGGCAA  450
      |||||||    |||||||||||||||||||||||||||||||||| ||| 
seq2  GGAGAACTTTTTTATGGGAACTGAAGCATGAAACTCAAATAAAGGTGCAC  446

seq1  ACTATTTAAATGAAGAGGTCTAAAAATAATAAGGAAAGAGAAGGGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTATTTAAATGAAGAGGTCTAAAAATAATAAGGAAAGAGAAGGGTGCAA  496

seq1  TTTGGGTTTCTTAACACTGTAAAAAAATATACTACCTATGGGAAAGTGTG  550
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTCATAACACTGTAAAAAAATATACTACCTATGGGAAAGTGTG  546

seq1  TTGTCTGTTTTTGTACAGTATCGGAAGGACATTATCTACCTGTTCTGTGG  600
      |||| ||||||||| |  |||||||| | ||||||||||||  |||||||
seq2  TTGTTTGTTTTTGTTCTTTATCGGAA-GTCATTATCTACCTAGTCTGTGG  595

seq1  CTTTCTGGAATGTGCCTCCCCTTTTCTATGTTGCTAGTAAGGTCTTTGTA  650
        || ||||||||| || ||||| || |||| | |||| |||||||| ||
seq2  TATTATGGAATGTGTCTACCCTTATCGATGTCGTTAGTTAGGTCTTTATA  645

seq1  AAATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGTC-TTTGTGAACTG  698
       | | |||| | ||||||  | || |  | || | || |||||||||||
seq2  CATTTTTGCAGATTTGTATTCTCTATCAG-AGGTATCTTTTGTGAACTG  693

seq1: chr11_96271502_96272463
seq2: B6Ng01-208E01.g_65_1030 (reverse)

seq1  AATAGAAAGGGAAGGGGCTGGA-GAGAT-GGCACAGCGGTTAAGAG-CAC  47
      || ||||| ||||||||||||| ||||| ||||||||||||||||| |||
seq2  AAAAGAAA-GGAAGGGGCTGGACGAGATAGGCACAGCGGTTAAGAGCCAC  49

seq1  TAGTGGCTCTT-CCACAGGATCTGGGTTCAATTCCCAGCACCCA-CAGGG  95
       || ||||||| ||||| |||||||||||||||||||||||||| |||||
seq2  AAG-GGCTCTTCCCACAAGATCTGGGTTCAATTCCCAGCACCCACCAGGG  98

seq1  CAGATTACAACCAT-CTGTAACTGTAGTTCCCGGGGAACCAACACCTTCA  144
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGATTACAACCATCCTGTAACTGTAGTTCCCGGGGAACCAACACCTTCA  148

seq1  CACAACACCCCCCATGAAGGCAAAACACCAATAAATAAATTATTTAAACA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACCCCCCATGAAGGCAAAACACCAATAAATAAATTATTTAAACA  198

seq1  CCAAAGAAAGGAGAGGGAAACTCTCTCGCTGTTCTATTTCGGTGGTTCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAGGAGAGGGAAACTCTCTCGCTGTTCTATTTCGGTGGTTCTG  248

seq1  TGGGTCTTTCTGTCTTTCCTGTTTTTCTCTCTCCAGTTTTCTCCCAGTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTTCTGTCTTTCCTGTTTTTCTCTCTCCAGTTTTCTCCCAGTCT  298

seq1  TGACTCTTCTTTGTCTTCCTGCTTCATAGAAGTTCAGTCGGCAGGTTTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTCTTTGTCTTCCTGCTTCATAGAAGTTCAGTCGGCAGGTTTAC  348

seq1  CCCCAGGATGCCTTGCTTTGTGCTGTTTTGTTTTCTGCCAGTCTTTTCCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGATGCCTTGCTTTGTGCTGTTTTGTTTTCTGCCAGTCTTTTCCT  398

seq1  GATGGCCTCGGGGTCTCCCTGGCTCCCACTTCCTCAGTGGACCGTGTGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTCGGGGTCTCCCTGGCTCCCACTTCCTCAGTGGACCGTGTGTC  448

seq1  GGGCTTGATAGCTTATCAGTGCACAACAAGGAGAAATCCAGATAGGGGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGATAGCTTATCAGTGCACAACAAGGAGAAATCCAGATAGGGGGC  498

seq1  TCGGAAGCCAGCAACCTCAGAGCATCTTGGGAAATAGCCTGTCCCAAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGCCAGCAACCTCAGAGCATCTTGGGAAATAGCCTGTCCCAAAGA  548

seq1  AGAGCCTCTTCCCATGTCACCCTCCAGGAAACAGTCACCCATAGACACTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCTTCCCATGTCACCCTCCAGGAAACAGTCACCCATAGACACTT  598

seq1  CTGGCCTCTTTCTGCTCTATCTGATCCTACAGTAAGAGAGGACGCTGGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTTCTGCTCTATCTGATCCTACAGTAAGAGAGGACGCTGGGT  648

seq1  TAGACCATGTGATCCTGCCTTTTCGTATGCTCAGTGCCAAGAGGGTTCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATGTGATCCTGCCTTTTCGTATGCTCAGTGCCAAGAGGGTTCAA  698

seq1  GTCCTGGCTTCATCTTTATTATGCTGTGCAACATTAGAGAAGTCGCTTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCTTCATCTTTATTATGCTGTGCAACATTAGAGAAGTCGCTTGG  748

seq1  TCTCTGGGATTCTCTTCCTTAGCCAGGTAGGATCCATTCAGAGTGAACCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGATTCTCTTCCTTAGCCAGGTAGGATCCATTCAGAGTGAACCG  798

seq1  TTTATGTACTTGACCCCAAGTTCAGAGAACTAGCGGATCCTGTCTGAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTACTTGACCCCAAGTTCAGAGAACTAGCGGATCCTGTCTGAATG  848

seq1  GTGGGAACTAATTGCTCTTTCCAGTAACTTCTCACGAGGCATGACCTCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAACTAATTGCTCTTTCCAGTAACTTCTCACGAGGCATGACCTCAT  898

seq1  ACTTCCTTTTTTTAAAAAAAAGTTACCCCAAGGATCTAACAGGAAGATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTTTTTAAAAAAAAGTTACCCCAAGGATCTAACAGGAAGATTT  948

seq1  TCTTCAAGGCAGGAATTC  962
      ||||||||||||||||||
seq2  TCTTCAAGGCAGGAATTC  966