BAC Information

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BAC

Clone NameB6Ng01-208K19
Chromosome11 (Build37)
Map Location 101,138,348 - 101,238,777
singlet/doubletdoublet
Overlap geneWnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc
Upstream geneLOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25
Downstream geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208K19.bB6Ng01-208K19.g
ACCGA027492GA027493
length1,1981,074
definitionB6Ng01-208K19.b B6Ng01-208K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,138,348 - 101,139,559)(101,237,692 - 101,238,777)
sequence
gaattcagaccagaagtcctatgtctccccaacaccagggccccaccatg
gcccatggcctctcagaatctgatgttttttgtgaccaactcaactcagc
aaagaacaccccagcactgagtgggtagaaggcccgtgggcacggagagt
gcgttgtgttgtatcctgaagagtcaaaaccttgcgggttctctttgctg
tgtggaaatctcatttctgtagcctaccccacctgccctccccaggcaag
ggctgaccactaagcaatccgagtccagatgcttgcggaaggccaacttc
cagctgggagagtggaggggctgtgctcctgccaccaaagtcaacagcaa
ccaataaaaatactgaggagaaaggctgtgggtctgtatctgtcatgcct
tagggacggggtgggggacaaagacttgtgaagcaggcaagaagggtgag
gaactcgaagccattctcctctcacaatggaaggcaggatggaagcggcc
cagctttctggctttttgccaccaggtcatgaggaaactacatgaccaaa
tgatccaatggccaaggcatgatcccctccagaccccaccctaggcctgt
ataggcaggtaccagtaaatgttaaaagaatgaagttactccttgctcat
ccttcacctaccaagctagagacaggaaaaggcccgtgccattaagagtc
tgttcttgaaggcagagaacagaagagtgaccttcttctaccccctaaga
cctgggtcagtctcaaacagtccagtaatctctcccttaaatcacgtgga
aagatctcacggaaaaagtaattctagttaaacatttacagctccctggg
gcaatgccaccgctgcagctagtgccagggagctttccagcgtgaagtgc
catatgtctctctgcccccacacactagcttggcttcgggagacatgact
catttattactttaacttgaccctatctttcccactttaaagttccaacg
ctgcagttaagccacacccctcccccttaagaagtcggggcccctgggag
gtgaagggtaaacacaagttgggtaaaggcaagtgcatactctctcaaca
aggaatataaaggctgagtaactggacaactgcacgtgaaagtgagcatc
cctccctgggcagcgcaaatgcatagtctgactcttggctcaatcaca
gaattctggggaatgcagacataggctgaggaggagaaaactgtgacgtg
atagagaaggtggtgtgagagacagtcaccactaccatacaggaatgcaa
gcacacagtgtgatttttatgtacagtggagactatctggaagcagaatt
aatcgcctttaactggctactcattacactagttggtctattattattat
tgagtgtgtcgtatctaaaaacacagacacaactgaagccggttagacat
agattgcatctggtttgctcgatacataaaacactctccctcctcctgat
ccttctttctcttcctggcaaatgcatggtgctcttttccttttcccagc
cggaagattctgcaccgcaagagcattctcagttgggatctctagcctgg
gcttgctcttctgtatccgacaggaggctggtaagcgaatcttcagggaa
ccatccagaatgactcagtttccagcattcacactttcctcaaacagccc
tgtaagctttgtaaaaattcaccttttggttaagatagcaaagaaagaca
gggctaccagggccgatgtcaacacctctggcctcacaatgggtttcaga
ggctttagttgttcctagtcctttgcatggcggttgactttaaataccaa
agactctgcatgccttacaaagacttcttgtgtgtctgtcccaggatccg
ggctaggcagtatgggataagactgacagatgcaaagggaactgttgcgc
tcttgcagaaagacaagatgtagaagatcaactcaacctgggatgggggc
ttcagagagtcaaagagatgcaggaggaccaaggaagccacaatgcagcg
aagcggaatgggagcaacttgctgagttctcccttgcagctcttccggta
catgctggagttgagggccagcccaaccccagagggttcccaggtttttg
aagaggctggcaaaggtgtagtgtcaaggtgaccattctggccgcctcca
caccatctcttagctttctcaaagtccacagagttccaccctaggcctta
gtagcagttagatcagcgcgaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101138348_101139559
seq2: B6Ng01-208K19.b_43_1240

seq1  GAATTCAGACCAGAAGTCCTATGTCTCCCCAACACCAGGGCCCCACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCAGAAGTCCTATGTCTCCCCAACACCAGGGCCCCACCATG  50

seq1  GCCCATGGCCTCTCAGAATCTGATGTTTTTTGTGACCAACTCAACTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGGCCTCTCAGAATCTGATGTTTTTTGTGACCAACTCAACTCAGC  100

seq1  AAAGAACACCCCAGCACTGAGTGGGTAGAAGGCCCGTGGGCACGGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACCCCAGCACTGAGTGGGTAGAAGGCCCGTGGGCACGGAGAGT  150

seq1  GCGTTGTGTTGTATCCTGAAGAGTCAAAACCTTGCGGGTTCTCTTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGTGTTGTATCCTGAAGAGTCAAAACCTTGCGGGTTCTCTTTGCTG  200

seq1  TGTGGAAATCTCATTTCTGTAGCCTACCCCACCTGCCCTCCCCAGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATCTCATTTCTGTAGCCTACCCCACCTGCCCTCCCCAGGCAAG  250

seq1  GGCTGACCACTAAGCAATCCGAGTCCAGATGCTTGCGGAAGGCCAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCACTAAGCAATCCGAGTCCAGATGCTTGCGGAAGGCCAACTTC  300

seq1  CAGCTGGGAGAGTGGAGGGGCTGTGCTCCTGCCACCAAAGTCAACAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGAGAGTGGAGGGGCTGTGCTCCTGCCACCAAAGTCAACAGCAA  350

seq1  CCAATAAAAATACTGAGGAGAAAGGCTGTGGGTCTGTATCTGTCATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAAATACTGAGGAGAAAGGCTGTGGGTCTGTATCTGTCATGCCT  400

seq1  TAGGGACGGGGTGGGGGACAAAGACTTGTGAAGCAGGCAAGAAGGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACGGGGTGGGGGACAAAGACTTGTGAAGCAGGCAAGAAGGGTGAG  450

seq1  GAACTCGAAGCCATTCTCCTCTCACAATGGAAGGCAGGATGGAAGCGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGAAGCCATTCTCCTCTCACAATGGAAGGCAGGATGGAAGCGGCC  500

seq1  CAGCTTTCTGGCTTTTTGCCACCAGGTCATGAGGAAACTACATGACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTGGCTTTTTGCCACCAGGTCATGAGGAAACTACATGACCAAA  550

seq1  TGATCCAATGGCCAAGGCATGATCCCCTCCAGACCCCACCCTAGGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAATGGCCAAGGCATGATCCCCTCCAGACCCCACCCTAGGCCTGT  600

seq1  ATAGGCAGGTACCAGTAAATGTTAAAAGAATGAAGTTACTCCTTGCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGGTACCAGTAAATGTTAAAAGAATGAAGTTACTCCTTGCTCAT  650

seq1  CCTTCACCTACCAAGCTAGAGACAGGAAAAGGCCCGTGCCATTAAGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTACCAAGCTAGAGACAGGAAAAGGCCCGTGCCATTAAGAGTC  700

seq1  TGTTCTTGAAGGCAGAGAACAGAAGAGTGACCTTCTTCTACCCCCTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGAAGGCAGAGAACAGAAGAGTGACCTTCTTCTACCCCCTAAGA  750

seq1  CCTGGGTCAGTCTCAAACAGTCCAGTAATCTCTCCCTTAAATCAGGTGGA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTGGGTCAGTCTCAAACAGTCCAGTAATCTCTCCCTTAAATCACGTGGA  800

seq1  AAGATCTCACGGAAAAAGTAATTCTAGTTAAACATTTACAGCTCCCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCACGGAAAAAGTAATTCTAGTTAAACATTTACAGCTCCCTGGG  850

seq1  GCAATGCCACCGCTGCAGCTAGTGCCAGGGAGCTTTCCAGCGTGAAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCACCGCTGCAGCTAGTGCCAGGGAGCTTTCCAGCGTGAAGTGC  900

seq1  CATATGTCTCTCTGCCCCCACACACTAGCTTGGCTTCGGGAGACATGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCTCTCTGCCCCCACACACTAGCTTGGCTTCGGGAGACATGACT  950

seq1  CATTTTATTACTTTAACTTGACCCTATCTTTCCCACTTTAAGGTTCCAAC  1000
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CA-TTTATTACTTTAACTTGACCCTATCTTTCCCACTTTAAAGTTCCAAC  999

seq1  GCTGCAGTTAAGCCACA-CCCTCCCCCTTAAG-AGTCGGGGCCCCTGGGA  1048
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  GCTGCAGTTAAGCCACACCCCTCCCCCTTAAGAAGTCGGGGCCCCTGGGA  1049

seq1  GGTGAAGGGGTAAACCACAAAGTTTGGGTAAAGGCAAGGTTGCATAC-CT  1097
      |||||| ||||||| |||||   |||||||||||||||  ||||||| ||
seq2  GGTGAA-GGGTAAA-CACAA--GTTGGGTAAAGGCAAG--TGCATACTCT  1093

seq1  CTCAAACAAGGAAATAAAAAGGGCTGAGTAACTGGACAAACTGCACGTG-  1146
      ||| ||||||| |||| ||| |||||||||||||||| ||||||||||| 
seq2  CTC-AACAAGG-AATATAAA-GGCTGAGTAACTGGAC-AACTGCACGTGA  1139

seq1  AAGTGAGCAATCCCCCCCTTGGCAGCGGCCAAATGCATAGTCTCTGGCTT  1196
      |||||||| ||||| |||| |||||||  ||||||||||||||   |  |
seq2  AAGTGAGC-ATCCCTCCCTGGGCAGCG--CAAATGCATAGTCT---GACT  1183

seq1  CTTGGGCTCAATCACA  1212
      ||| ||||||||||||
seq2  CTT-GGCTCAATCACA  1198

seq1: chr11_101237692_101238777
seq2: B6Ng01-208K19.g_65_1138 (reverse)

seq1  GTTTCGCGCTTGGATTCTACCTGCTACTAAAAGGGCTAGGGGTGGACCTC  50
      ||||||||||  || |||| ||||||||  |||| ||| ||||||| || 
seq2  GTTTCGCGCT--GA-TCTAACTGCTACT--AAGGCCTA-GGGTGGAACT-  43

seq1  CTGTGGACTTTGGAGAAAGCTAAGAGATGGTGTG--AGCGGCCAGAATGG  98
      ||||||||||| ||||||||||||||||||||||   |||||||||||||
seq2  CTGTGGACTTT-GAGAAAGCTAAGAGATGGTGTGGAGGCGGCCAGAATGG  92

seq1  GTCCACCTTGACACTACACCCTTTGCCAGCCTCTTCAAAAACCTGGGAAC  148
         ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  --TCACCTTGACACTACA-CCTTTGCCAGCCTCTTCAAAAACCTGGGAAC  139

seq1  CCTCTTGGGGTTGGGGCTGGCCCTCAACTCCAGCATGTACCGGAAGAGCT  198
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTC-TGGGGTT-GGGCTGGCCCTCAACTCCAGCATGTACCGGAAGAGCT  187

seq1  GCAAGGGAGAACTCAGCAAGTTGCTCCCATTCCGCTTCGCCTGCATTGTG  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAAGGGAGAACTCAGCAAGTTGCTCCCATTCCGCTTCG-CTGCATTGTG  236

seq1  GCTTCCTTGGTCCTCCTGCATCTCTTTGACTCTCTGAAGCCCCCATCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTGGTCCTCCTGCATCTCTTTGACTCTCTGAAGCCCCCATCCCA  286

seq1  GGTTGAGTTGATCTTCTACATCTTGTCTTTCTGCAAGAGCGCAACAGTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGTTGATCTTCTACATCTTGTCTTTCTGCAAGAGCGCAACAGTTC  336

seq1  CCTTTGCATCTGTCAGTCTTATCCCATACTGCCTAGCCCGGATCCTGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCATCTGTCAGTCTTATCCCATACTGCCTAGCCCGGATCCTGGGA  386

seq1  CAGACACACAAGAAGTCTTTGTAAGGCATGCAGAGTCTTTGGTATTTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACAAGAAGTCTTTGTAAGGCATGCAGAGTCTTTGGTATTTAAA  436

seq1  GTCAACCGCCATGCAAAGGACTAGGAACAACTAAAGCCTCTGAAACCCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCGCCATGCAAAGGACTAGGAACAACTAAAGCCTCTGAAACCCAT  486

seq1  TGTGAGGCCAGAGGTGTTGACATCGGCCCTGGTAGCCCTGTCTTTCTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCCAGAGGTGTTGACATCGGCCCTGGTAGCCCTGTCTTTCTTTG  536

seq1  CTATCTTAACCAAAAGGTGAATTTTTACAAAGCTTACAGGGCTGTTTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAACCAAAAGGTGAATTTTTACAAAGCTTACAGGGCTGTTTGAG  586

seq1  GAAAGTGTGAATGCTGGAAACTGAGTCATTCTGGATGGTTCCCTGAAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTGAATGCTGGAAACTGAGTCATTCTGGATGGTTCCCTGAAGAT  636

seq1  TCGCTTACCAGCCTCCTGTCGGATACAGAAGAGCAAGCCCAGGCTAGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTACCAGCCTCCTGTCGGATACAGAAGAGCAAGCCCAGGCTAGAGA  686

seq1  TCCCAACTGAGAATGCTCTTGCGGTGCAGAATCTTCCGGCTGGGAAAAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTGAGAATGCTCTTGCGGTGCAGAATCTTCCGGCTGGGAAAAGG  736

seq1  AAAAGAGCACCATGCATTTGCCAGGAAGAGAAAGAAGGATCAGGAGGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCACCATGCATTTGCCAGGAAGAGAAAGAAGGATCAGGAGGAGG  786

seq1  GAGAGTGTTTTATGTATCGAGCAAACCAGATGCAATCTATGTCTAACCGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTTTTATGTATCGAGCAAACCAGATGCAATCTATGTCTAACCGG  836

seq1  CTTCAGTTGTGTCTGTGTTTTTAGATACGACACACTCAATAATAATAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGTGTCTGTGTTTTTAGATACGACACACTCAATAATAATAATA  886

seq1  GACCAACTAGTGTAATGAGTAGCCAGTTAAAGGCGATTAATTCTGCTTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACTAGTGTAATGAGTAGCCAGTTAAAGGCGATTAATTCTGCTTCC  936

seq1  AGATAGTCTCCACTGTACATAAAAATCACACTGTGTGCTTGCATTCCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTCTCCACTGTACATAAAAATCACACTGTGTGCTTGCATTCCTGT  986

seq1  ATGGTAGTGGTGACTGTCTCTCACACCACCTTCTCTATCACGTCACAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTGGTGACTGTCTCTCACACCACCTTCTCTATCACGTCACAGTT  1036

seq1  TTCTCCTCCTCAGCCTATGTCTGCATTCCCCAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCTCAGCCTATGTCTGCATTCCCCAGAATTC  1074