BAC Information

Click to search

BAC

Clone NameB6Ng01-208O15
Chromosome11 (Build37)
Map Location 104,269,278 - 104,399,634
singlet/doubletdoublet
Overlap gene1700081L11Rik, Cdc27
Upstream genePlekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt
Downstream geneMyl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208O15.bB6Ng01-208O15.g
ACCGA027666GA027667
length1,0191,084
definitionB6Ng01-208O15.b B6Ng01-208O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,269,278 - 104,270,312)(104,398,553 - 104,399,634)
sequence
gaattcagaaaggagagggggtggggtaatgatttggacatgagcaaata
gttttgtttttttttgttttttttttttttgtttttaaagtcagtatttg
gcaatgtacagcctgggctatactatctcaaagaaaacaaaagagaggac
agtgaactatatatgaattcttttcaataaggccgtttttacaaacatga
agtatttttctcacttgatctaaaaggtgaaataaataggtgaaatacag
tcagtgtggtatagtgcatatccctctagaccccccagtcccacctacat
aatcctttttaaatatttcaactgcccaaacaccacaaacacttaagtat
caccatgtaaattctttctctaataggatctgaaccagtgtgggaatgaa
aatatgttcttggggttgttgatggctcagtttggttatgagtaccgcat
ctgctgctcttccagaagaactgatccagtcccagcactaagtagcggtt
tcataggaccccgtgctcattctggtctctgtgggcatcacatgtatgtg
gtacatatataaccaggcagaacaaaacaccaatacacaaagatagtaaa
aacaatcaaacctcaaaataatgaggcagagagcatgaattaagcacacg
gaaggacaacttaagtggcaagccacacagcatttttttgacactactct
aacttattagacagcttattacctttgttgcataagagatgaagaatgat
cctagcctttagagcaaccgtgaaacctacaatactcttcccttctgaat
ttaagaggttccccccacccccgcagggggatggatgggtttattcccag
gccatcaccacgggccacgccccttaaaagtttttgttttgtctgttttt
ttttttttttccgagacaggttttctctgtatagcccctggctgtcttgg
aagtccatctagtagaacaggttgcctgactcagaatctggcctgcctct
gctccaagtgctggattaa
gaattcaaagccaggcaggactacatggtgagaccctgtctcaaaaaaag
gagtggaaggaagaagaaagagtgggctagagatgagcagtagtgagtct
tgtcagaatctggagggagaatcagaaaacaatattcacacaaagtatta
cggttatgctctgagtagataagtatgttgctatctattacaggcagatt
ctgtaagaaggaatagagtctggtaatagcatgtggataaattagcggca
aatatggtagaacattttatgagggctctagatgttcctgcacagcatat
attcagtactttttaaatggctttaaatgtggcagaatcctagagtaatc
caacaaagctttctaacagtcctgttttcatttagtggcctcatctcatc
tttagttcccaaacaataaaagatcctctagccctaatgagtcccgttag
tgtggtctgataatcagtaatataaatattactttccatgaggttgagta
ttactgaattgatctgtatgaaagtgttttaaaataatcatgttcaactg
ctggcagagaaatatattcaaacacgcacgcacacacacacacacacaca
cacacacacacacacatatatatgcatacacatacacacatacatataga
tggaggagggctgagaagagaagaggctaactctccctggcatgggcaca
ctatcttctcagtccccttatttattattttttaaatagctttttttcct
tataaaattagtaaaaacttaaaatctgtctcacacaaaggagtgtgagg
aagagaaggatgaatgggctaggaagaagttagtatatattgaattattt
taaactaggtttaggagatgagcaagttattggtgaagaaaaggggtata
tagaagtgtagaaagccgggcagtgggtggtgcacacctttaatcccagc
cacctggggaggcagaggcagcagatttctgagttcgaggccagcctggt
ctacagagtgagttccaggacagctgggcctataacaagaagaaatccct
gtcctcaaaaatccaaaaaaaaaaaaagagtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104269278_104270312
seq2: B6Ng01-208O15.b_47_1065

seq1  GAATTCAGAAAGGAGAGGGGGTGGGGTAATGATTTGGACATGAGCAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGAGAGGGGGTGGGGTAATGATTTGGACATGAGCAAATA  50

seq1  GTTTTGTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTAAAGTCAGTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTAAAGTCAGTATTTG  100

seq1  GCAATGTACAGCCTGGGCTATACTATCTCAAAGAAAACAAAAGAGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTACAGCCTGGGCTATACTATCTCAAAGAAAACAAAAGAGAGGAC  150

seq1  AGTGAACTATATATGAATTCTTTTCAATAAGGCCGTTTTTACAAACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTATATATGAATTCTTTTCAATAAGGCCGTTTTTACAAACATGA  200

seq1  AGTATTTTTCTCACTTGATCTAAAAGGTGAAATAAATAGGTGAAATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTCTCACTTGATCTAAAAGGTGAAATAAATAGGTGAAATACAG  250

seq1  TCAGTGTGGTATAGTGCATATCCCTCTAGACCCCCCAGTCCCACCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGGTATAGTGCATATCCCTCTAGACCCCCCAGTCCCACCTACAT  300

seq1  AATCCTTTTTAAATATTTCAACTGCCCAAACACCACAAACACTTAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTTTAAATATTTCAACTGCCCAAACACCACAAACACTTAAGTAT  350

seq1  CACCATGTAAATTCTTTCTCTAATAGGATCTGAACCAGTGTGGGAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTAAATTCTTTCTCTAATAGGATCTGAACCAGTGTGGGAATGAA  400

seq1  AATATGTTCTTGGGGTTGTTGATGGCTCAGTTTGGTTATGAGTACCGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCTTGGGGTTGTTGATGGCTCAGTTTGGTTATGAGTACCGCAT  450

seq1  CTGCTGCTCTTCCAGAAGAACTGATCCAGTCCCAGCACTAAGTAGCGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTCTTCCAGAAGAACTGATCCAGTCCCAGCACTAAGTAGCGGTT  500

seq1  TCATAGGACCCCGTGCTCATTCTGGTCTCTGTGGGCATCACATGTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGACCCCGTGCTCATTCTGGTCTCTGTGGGCATCACATGTATGTG  550

seq1  GTACATATATAACCAGGCAGAACAAAACACCAATACACAAAGATAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATAACCAGGCAGAACAAAACACCAATACACAAAGATAGTAAA  600

seq1  AACAATCAAACCTCAAAATAATGAGGCAGAGAGCATGAATTAAGCACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAAACCTCAAAATAATGAGGCAGAGAGCATGAATTAAGCACACG  650

seq1  GAAGGACAACTTAAGTGGCAAGCCACACAGCATTTTTTTGACACTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAACTTAAGTGGCAAGCCACACAGCATTTTTTTGACACTACTCT  700

seq1  AACTTATTAGACAGCTTATTACCTTTGTTGCATAAGAGATGAAGAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTAGACAGCTTATTACCTTTGTTGCATAAGAGATGAAGAATGAT  750

seq1  CCTAGCCTTTAGAGCAACCGTGAAACCTACAATACTCTT-CCTTCTGAAT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTAGCCTTTAGAGCAACCGTGAAACCTACAATACTCTTCCCTTCTGAAT  800

seq1  TTAAGAGGTTCCCCCCACCCCCGCAGGGGGATGGATGGGTTTATTCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGTTCCCCCCACCCCCGCAGGGGGATGGATGGGTTTATTCCCAG  850

seq1  GGCATCACCACGGGCCACGCCCCTTAAAAGTTTTTTTGTTTTGTTCTGTT  899
      | ||||||||||||||||||||||||||||  ||||||||||| ||||  
seq2  GCCATCACCACGGGCCACGCCCCTTAAAAG--TTTTTGTTTTG-TCTG--  895

seq1  TTTTTTTTTTTTTTTTTTTTTTCCGAGACAGGGTTTCTCTGTATAGCCCC  949
             ||||||||||||||||||||||||| |||||||||||||||||
seq2  -------TTTTTTTTTTTTTTTCCGAGACAGGTTTTCTCTGTATAGCCCC  938

seq1  TGGCTGTCCTGGAAGTCACTCT-GTAGACCAGGTTGGCCTTGAACTCAGA  998
      |||||||| ||||||||  ||| ||||| |||||| ||||   |||||| 
seq2  TGGCTGTCTTGGAAGTCCATCTAGTAGAACAGGTT-GCCT--GACTCAG-  984

seq1  AATCT-GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  1035
      ||||| ||||||||||||   ||||||||| |||||||
seq2  AATCTGGCCTGCCTCTGC--TCCAAGTGCT-GGATTAA  1019

seq1: chr11_104398553_104399634
seq2: B6Ng01-208O15.g_65_1148 (reverse)

seq1  TACACTTCTTTTTTTTTTTTTTTTGGATTTTTGA-GACAGGG-TTTC-TC  47
      |||||    | ||||||||||||||||||||||| ||||||| |||| ||
seq2  TACAC----TCTTTTTTTTTTTTTGGATTTTTGAGGACAGGGATTTCTTC  46

seq1  T--GTATAGCCCCAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  95
      |   ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAGGCCCAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  96

seq1  TCGAACTCAGAAATCTGCCTGCCTCTGCCT-CCCAGGT-GCTGGGATTAA  143
      ||||||||||||||||| |||||||||||| ||||||| |||||||||||
seq2  TCGAACTCAGAAATCTG-CTGCCTCTGCCTCCCCAGGTGGCTGGGATTAA  145

seq1  AGGTGTGCACCA-CCACTGCCCGGCTTTTCTACACTTCTATATACCCCTT  192
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AGGTGTGCACCACCCACTGCCCGGC-TTTCTACACTTCTATATACCCCTT  194

seq1  TTCTTCACCAATAACTTGCTCATCTCCTAAACCTAGTTTAAAATAATTCA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACCAATAACTTGCTCATCTCCTAAACCTAGTTTAAAATAATTCA  244

seq1  ATATATACTAACTTCTTCCTAGCCCATTCATCCTTCTCTTCCTCACACTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTAACTTCTTCCTAGCCCATTCATCCTTCTCTTCCTCACACTC  294

seq1  CTTTGTGTGAGACAGATTTTAAGTTTTTACTAATTTTATAAGGAAAAAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGAGACAGATTTTAAGTTTTTACTAATTTTATAAGGAAAAAAA  344

seq1  GCTATTTAAAAAATAATAAATAAGGGGACTGAGAAGATAGTGTGCCCATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTAAAAAATAATAAATAAGGGGACTGAGAAGATAGTGTGCCCATG  394

seq1  CCAGGGAGAGTTAGCCTCTTCTCTTCTCAGCCCTCCTCCATCTATATGTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGAGTTAGCCTCTTCTCTTCTCAGCCCTCCTCCATCTATATGTA  444

seq1  TGTGTGTATGTGTATGCATATATATGTGTGTGTGTGTGTGTGTGTGTGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTATGCATATATATGTGTGTGTGTGTGTGTGTGTGTGTG  494

seq1  TGTGTGTGTGCGTGCGTGTTTGAATATATTTCTCTGCCAGCAGTTGAACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCGTGCGTGTTTGAATATATTTCTCTGCCAGCAGTTGAACA  544

seq1  TGATTATTTTAAAACACTTTCATACAGATCAATTCAGTAATACTCAACCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTTAAAACACTTTCATACAGATCAATTCAGTAATACTCAACCT  594

seq1  CATGGAAAGTAATATTTATATTACTGATTATCAGACCACACTAACGGGAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGTAATATTTATATTACTGATTATCAGACCACACTAACGGGAC  644

seq1  TCATTAGGGCTAGAGGATCTTTTATTGTTTGGGAACTAAAGATGAGATGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGGCTAGAGGATCTTTTATTGTTTGGGAACTAAAGATGAGATGA  694

seq1  GGCCACTAAATGAAAACAGGACTGTTAGAAAGCTTTGTTGGATTACTCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTAAATGAAAACAGGACTGTTAGAAAGCTTTGTTGGATTACTCTA  744

seq1  GGATTCTGCCACATTTAAAGCCATTTAAAAAGTACTGAATATATGCTGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGCCACATTTAAAGCCATTTAAAAAGTACTGAATATATGCTGTG  794

seq1  CAGGAACATCTAGAGCCCTCATAAAATGTTCTACCATATTTGCCGCTAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATCTAGAGCCCTCATAAAATGTTCTACCATATTTGCCGCTAAT  844

seq1  TTATCCACATGCTATTACCAGACTCTATTCCTTCTTACAGAATCTGCCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACATGCTATTACCAGACTCTATTCCTTCTTACAGAATCTGCCTG  894

seq1  TAATAGATAGCAACATACTTATCTACTCAGAGCATAACCGTAATACTTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATAGCAACATACTTATCTACTCAGAGCATAACCGTAATACTTTG  944

seq1  TGTGAATATTGTTTTCTGATTCTCCCTCCAGATTCTGACAAGACTCACTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATTGTTTTCTGATTCTCCCTCCAGATTCTGACAAGACTCACTA  994

seq1  CTGCTCATCTCTAGCCCACTCTTTCTTCTTCCTTCCACTCCTTTTTTTGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATCTCTAGCCCACTCTTTCTTCTTCCTTCCACTCCTTTTTTTGA  1044

seq1  GACAGGGTCTCACCATGTAGTCCTGCCTGGCTTTGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCTCACCATGTAGTCCTGCCTGGCTTTGAATTC  1084