BAC Information

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BAC

Clone NameB6Ng01-209C12
Chromosome11 (Build37)
Map Location 23,021,061 - 23,172,182
singlet/doubletdoublet
Overlap geneXpo1
Upstream geneEhbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875
Downstream geneLOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209C12.bB6Ng01-209C12.g
ACCGA027850GA027851
length1,100658
definitionB6Ng01-209C12.b B6Ng01-209C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,021,061 - 23,022,139)(23,171,527 - 23,172,182)
sequence
gaattcttaggatttgaccaatcaaagtatttctgttagagtctttctga
acattcaaaagatcttagttaggagcacaagctagcctggctgcttagaa
ttagtgacgcctgggaggctcccagctccctgaaatgtatatagttgcac
cctttccagatgaaaaacaggacacacagaaaagaaatacagtaagttag
tggcagaaccagaacttaaaactgagcaggctgggagaccactgtccgcc
tgacctgaagcatcccccaaaggcacatgtgttgaagacctggtcgtcat
ggtggtgctatggaaagaggtggaacctttaggaggcaacgttattggta
cccccaacactctgctttctctttctctttacataccagctgccatgagg
tagcaggccttcccacaacaagctcccaacatggtgtgctatgtagtcac
aagccagagaagaaatgtgagtgactgtggatcgaaacctctggaactgt
gagctggaagaagtcttctctcctttcacgaggattttcacaggcccagt
aagagagtattctctccaaaacaaagcagttttagtactgcgaaggacta
tgctaagtagtcagggcagggatgagtgggccattcattacagagtcttg
tccacctttttagggacgtgaggtatcagaaaagatcagatgcaatgtgt
gaatttcctactttctgagatatttattaatttgaattataaacaatttt
aaatattaaaagaattcaatttgctttggtgtgcctattatttctgacta
ccatgcaatgcttaagaaaaaccctattatatttattttaagtatgtgta
aatgtgatatgtaacatagtatattaataagctcaaccaagaacttaatc
aaagaaacaactgttttagtataaactataaatttatagataaattttga
gaaatatggttaaatgcttaacatgtaggcttaaaaattcataatgtaaa
taaggaactagaaagaatgacctctgccaataaaagccatttaggaataa
ccctgaatttcaatcccagaacccaaccattacccaaacatgataaggaa

gaattcaatgctcttaaatctctccagccacctttaggtttttttttttt
ttttggggttttttgtttgctgtttgtttgtttgtttgtttgtttgtttg
tttttgagacacagtttctccttgtggccctggatgtactgaaactcact
ctgtagaacaggctagtttctaactcagatctgtctgcctctgtctctga
agtgctgggattaaaagcctgtgctaccaccccagcttaattaatgtcat
taccagtaactccagcaccaaaagatctgtcacctccttctgtccctcac
agatgaagggacacagatggagaaggatggacaaactgactctgcctacc
ctccctcaaaaggaatatgagagagagagagagagagagagagagagaga
acgagagccagcctggcagtggtggcacgcgcctttaatcccagcaattg
ggaggcagaggcagttctgagttcaaggccagcctggtctacagagtgag
ttccaggacagccagggatacatagaaaaaccctgtctcagggaaaagaa
aaaaaaaagtatacctctattcactaagccacattaacagcttttgctct
ttattatgtgcatgtgtttaaggagcagggtgtgtgtgtgtgggtgtttg
tgctgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23021061_23022139
seq2: B6Ng01-209C12.b_41_1140

seq1  GAATTCTTAGGATTTGACCAATCAAAGTATTTCTGTTAGAGTCTTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGATTTGACCAATCAAAGTATTTCTGTTAGAGTCTTTCTGA  50

seq1  ACATTCAAAAGATCTTAGTTAGGAGCACAAGCTAGCCTGGCTGCTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAAAAGATCTTAGTTAGGAGCACAAGCTAGCCTGGCTGCTTAGAA  100

seq1  TTAGTGACGCCTGGGAGGCTCCCAGCTCCCTGAAATGTATATAGTTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACGCCTGGGAGGCTCCCAGCTCCCTGAAATGTATATAGTTGCAC  150

seq1  CCTTTCCAGATGAAAAACAGGACACACAGAAAAGAAATACAGTAAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGATGAAAAACAGGACACACAGAAAAGAAATACAGTAAGTTAG  200

seq1  TGGCAGAACCAGAACTTAAAACTGAGCAGGCTGGGAGACCACTGTCCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAACCAGAACTTAAAACTGAGCAGGCTGGGAGACCACTGTCCGCC  250

seq1  TGACCTGAAGCATCCCCCAAAGGCACATGTGTTGAAGACCTGGTCGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAAGCATCCCCCAAAGGCACATGTGTTGAAGACCTGGTCGTCAT  300

seq1  GGTGGTGCTATGGAAAGAGGTGGAACCTTTAGGAGGCAACGTTATTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTATGGAAAGAGGTGGAACCTTTAGGAGGCAACGTTATTGGTA  350

seq1  CCCCCAACACTCTGCTTTCTCTTTCTCTTTACATACCAGCTGCCATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACACTCTGCTTTCTCTTTCTCTTTACATACCAGCTGCCATGAGG  400

seq1  TAGCAGGCCTTCCCACAACAAGCTCCCAACATGGTGTGCTATGTAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCCTTCCCACAACAAGCTCCCAACATGGTGTGCTATGTAGTCAC  450

seq1  AAGCCAGAGAAGAAATGTGAGTGACTGTGGATCGAAACCTCTGGAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGAAGAAATGTGAGTGACTGTGGATCGAAACCTCTGGAACTGT  500

seq1  GAGCTGGAAGAAGTCTTCTCTCCTTTCACGAGGATTTTCACAGGCCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAAGAAGTCTTCTCTCCTTTCACGAGGATTTTCACAGGCCCAGT  550

seq1  AAGAGAGTATTCTCTCCAAAACAAAGCAGTTTTAGTACTGCGAAGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTATTCTCTCCAAAACAAAGCAGTTTTAGTACTGCGAAGGACTA  600

seq1  TGCTAAGTAGTCAGGGCAGGGATGAGTGGGCCATTCATTACAGAGTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTAGTCAGGGCAGGGATGAGTGGGCCATTCATTACAGAGTCTTG  650

seq1  TCCACCTTTTTAGGGACGTGAGGTATCAGAAAAGATCAGATGCAATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTTTTAGGGACGTGAGGTATCAGAAAAGATCAGATGCAATGTGT  700

seq1  GAATTTCCTACTTTCTGAGATATTTATTAATTTGAATTATAAACAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTACTTTCTGAGATATTTATTAATTTGAATTATAAACAATTTT  750

seq1  AAATATTAAAAGAATTCAATTTGC-TTGGTGTGCCTATTA-TTCTGACTA  798
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AAATATTAAAAGAATTCAATTTGCTTTGGTGTGCCTATTATTTCTGACTA  800

seq1  CCATGCAATGCTTAAGAAAAA-CCTATTATATTTATTTAAAGTATGTGTA  847
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  CCATGCAATGCTTAAGAAAAACCCTATTATATTTATTTTAAGTATGTGTA  850

seq1  AATGTGATATGTAACATAGTATATTAATAAGCTC-ACCAAGAACTTAATC  896
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGTGATATGTAACATAGTATATTAATAAGCTCAACCAAGAACTTAATC  900

seq1  AAAG-AACAACTGTTTTAGTATAAACTATAAATTTATAGATAAA-TTTGA  944
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGAAACAACTGTTTTAGTATAAACTATAAATTTATAGATAAATTTTGA  950

seq1  GAAATATGGTTAAATGCTTAACATGTAGGCTT-AAAATTCATAATGTAAA  993
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAATATGGTTAAATGCTTAACATGTAGGCTTAAAAATTCATAATGTAAA  1000

seq1  TA--GGACTAGAAAG-ATGA-CTCTGCAAATAAAAGC--ATTAGG-ATAA  1036
      ||  | ||||||||| |||| |||||| |||||||||   ||||| ||||
seq2  TAAGGAACTAGAAAGAATGACCTCTGCCAATAAAAGCCATTTAGGAATAA  1050

seq1  -CCTGAA-TTCAATCCCAGAA-CCAAC--ATACC--AACATGATAGGGAA  1079
       |||||| ||||||||||||| |||||   ||||  ||||||||| ||||
seq2  CCCTGAATTTCAATCCCAGAACCCAACCATTACCCAAACATGATAAGGAA  1100

seq1: chr11_23171527_23172182
seq2: B6Ng01-209C12.g_69_726 (reverse)

seq1  ACACAGCACAAACA-CCACACACACACACCCTGCTCCTTAAACACATGCA  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACAGCACAAACACCCACACACACACACCCTGCTCCTTAAACACATGCA  50

seq1  CATAATAAAGAGC-AAAGCTGTTAATGTGGCTTAGTGAATAGAGGTATAC  98
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATAATAAAGAGCAAAAGCTGTTAATGTGGCTTAGTGAATAGAGGTATAC  100

seq1  TTTTTTTTTTCTTTTCCCTGAGACAGGGTTTTTCTATGTATCCCTGGCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTTTCCCTGAGACAGGGTTTTTCTATGTATCCCTGGCTG  150

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAACTGCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAACTGCCT  200

seq1  CTGCCTCCCAATTGCTGGGATTAAAGGCGCGTGCCACCACTGCCAGGCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAATTGCTGGGATTAAAGGCGCGTGCCACCACTGCCAGGCTG  250

seq1  GCTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTCCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTCCTTT  300

seq1  TGAGGGAGGGTAGGCAGAGTCAGTTTGTCCATCCTTCTCCATCTGTGTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGGGTAGGCAGAGTCAGTTTGTCCATCCTTCTCCATCTGTGTCC  350

seq1  CTTCATCTGTGAGGGACAGAAGGAGGTGACAGATCTTTTGGTGCTGGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTGTGAGGGACAGAAGGAGGTGACAGATCTTTTGGTGCTGGAGT  400

seq1  TACTGGTAATGACATTAATTAAGCTGGGGTGGTAGCACAGGCTTTTAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTAATGACATTAATTAAGCTGGGGTGGTAGCACAGGCTTTTAATC  450

seq1  CCAGCACTTCAGAGACAGAGGCAGACAGATCTGAGTTAGAAACTAGCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTCAGAGACAGAGGCAGACAGATCTGAGTTAGAAACTAGCCTG  500

seq1  TTCTACAGAGTGAGTTTCAGTACATCCAGGGCCACAAGGAGAAACTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGAGTGAGTTTCAGTACATCCAGGGCCACAAGGAGAAACTGTGT  550

seq1  CTCAAAAACAAACAAACAAACAAACAAACAAACAAACAGCAAACAAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACAAACAAACAAACAAACAAACAAACAAACAGCAAACAAAAAA  600

seq1  CCCCAAAAAAAAAAAAAAAACCTAAAGGTGGCTGGAGAGATTTAAGAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAAAAAAAAAAAAACCTAAAGGTGGCTGGAGAGATTTAAGAGCA  650

seq1  TTGAATTC  656
      ||||||||
seq2  TTGAATTC  658