BAC Information

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BAC

Clone NameB6Ng01-210I04
Chromosome11 (Build37)13 (Build37)
Map Location 9,432,939 - 9,434,06331,973,495 - 31,973,860
singlet/doubletsingletsinglet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210I04.bB6Ng01-210I04.g
ACCGA028831GA028832
length1,1181,008
definitionB6Ng01-210I04.b B6Ng01-210I04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,432,939 - 9,434,063)(31,973,495 - 31,973,860)
sequence
gaattccaaagccatgctgtaggcctttgtcaggttctccactgctggct
ttcaggctttaaagcatttggggcaatcatatcaattgagatctcatcag
tggcagaggcaggggagccagtggcagtcttgctgcttcagggagcagag
cagaagagctactggcataatgaaataatgatctcttgttaaaattcccc
ctactttgtagtacctagtaatggaaactgggaacaaatcatgtcttaca
attcctgtggcttttgggaaaaattttgtgtggagtttttggaaactgaa
agaggtgactacagatgtggtagataggtatggttacttcacattgcttg
caatgacagcagcatttactattctgtcaaatttcccaagtaccccaaac
acactgcattgcttcatagatgcagacatccgtttgctatctatgttgct
atgatatcatacccccttgcatctgcttctcctcctcctttgccaggcca
gtgtgttatcattgccctcaatactgaccttctctgacctttggtttccc
tgcattttttttgtgccctcctagcacccttaaatatattctacaatctc
tacttctccttcttaaccttgagaggataaaagttgtattcacagaactt
ggaatagtaccttggtatatcagaagtacccagtctaagcctgttgaatg
gatgaataaattcagttgagccagatggcaatgcagtcctattctttaac
atttgcagtaagggtgctatggaacaggattgttcttcagtctgtttcca
tccagactctgagaagccaatattaatgtatacctttttttcttaccttt
tttcttatgtcagctatattgagaagcttaataagtatacgataccatac
agcccacagagataaagttacataattctcacccaggaaaaaactcatta
gctgcatgaaaggcaaccagcaagttaatgattataaaactcagtgtggt
aattgataaactgatggaaaggtattgggacattcaaagaataagtacct
cacccactatagttctgcatgccttctagagcagtaagcctgagagtgtt
aaggaaagaactgagcag

gaattccagacccttcaagcacatcaaaaataatggcatggatgaatttt
taaaataatattaataaaggcctgaatgaagtccaagagaacagaaacaa
ccagaagaatgaaattagaacgtcaatgttgactaaaaaaatagtattca
gatggtaatgaatgaaaatctcaaaaagctatcaaaaaatattcctaaga
catttgctaaaacaatgaccaataagaaatgcttaacactacaaaatcaa
caaaatgacaggaattgatatatatctttctttttttaatttttttattg
ggtattttcctcatttacatttccaatgctatcccaaacgtcccccatac
cctccccacctactcccacttcttggccctggcgttcccctgtactgagg
catataaagtttgcatgaccaatgggcctctctttccactgatggccggc
taggccaacttttgatacatatgcagttagagacacgagctccagggggt
actggttagttcataatgttgttccacctatagggttgcagatcacttta
gctccttgggtactttctctagctcctccattgggggctctgatccatcc
aatagctgattttgagcatccacttctgtgtttgctaggccctggcatag
cctcacgagagacaactatatcagggtcctttcagcaaaatcttgctagt
gtatgcaatggtgtctgcgtttggcggctgattatgggatggatccccgg
atatggtagtctctatatggtccatccttttgtctcagttccaaactttg
tctctgtaactccttccatgggtgttttgttcccaattctaagaagggga
aaagtgtccacactttgggtctaggttcttgagtttcctgtgctttgtat
cttgtatcttgggtatctaagtttctgggctaatatcccactcatcagtg
agtacatatcatgtgagttcttttgtgattggttacctcactcagaatga
tgccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9432939_9434063
seq2: B6Ng01-210I04.b_43_1160

seq1  GAATTCCAAAGCCATGCTGTAGGCCTTTGTCAGGTTCTCCACTGCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCCATGCTGTAGGCCTTTGTCAGGTTCTCCACTGCTGGCT  50

seq1  TTCAGGCTTTAAAGCATTTGGGGCAATCATATCAATTGAGATCTCATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTTTAAAGCATTTGGGGCAATCATATCAATTGAGATCTCATCAG  100

seq1  TGGCAGAGGCAGGGGAGCCAGTGGCAGTCTTGCTGCTTCAGGGAGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGGCAGGGGAGCCAGTGGCAGTCTTGCTGCTTCAGGGAGCAGAG  150

seq1  CAGAAGAGCTACTGGCATAATGAAATAATGATCTCTTGTTAAAATTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGCTACTGGCATAATGAAATAATGATCTCTTGTTAAAATTCCCC  200

seq1  CTACTTTGTAGTACCTAGTAATGGAAACTGGGAACAAATCATGTCTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGTAGTACCTAGTAATGGAAACTGGGAACAAATCATGTCTTACA  250

seq1  ATTCCTGTGGCTTTTGGGAAAAATTTTGTGTGGAGTTTTTGGAAACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTGGCTTTTGGGAAAAATTTTGTGTGGAGTTTTTGGAAACTGAA  300

seq1  AGAGGTGACTACAGATGTGGTAGATAGGTATGGTTACTTCACATTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGACTACAGATGTGGTAGATAGGTATGGTTACTTCACATTGCTTG  350

seq1  CAATGACAGCAGCATTTACTATTCTGTCAAATTTCCCAAGTACCCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAGCAGCATTTACTATTCTGTCAAATTTCCCAAGTACCCCAAAC  400

seq1  ACACTGCATTGCTTCATAGATGCAGACATCCGTTTGCTATCTATGTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCATTGCTTCATAGATGCAGACATCCGTTTGCTATCTATGTTGCT  450

seq1  ATGATATCATACCCCCTTGCATCTGCTTCTCCTCCTCCTTTGCCAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCATACCCCCTTGCATCTGCTTCTCCTCCTCCTTTGCCAGGCCA  500

seq1  GTGTGTTATCATTGCCCTCAATACTGACCTTCTCTGACCTTTGGTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTATCATTGCCCTCAATACTGACCTTCTCTGACCTTTGGTTTCCC  550

seq1  TGCATTTTTTTTGTGCCCTCCTAGCACCCTTAAATATATTCTACAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTTTTGTGCCCTCCTAGCACCCTTAAATATATTCTACAATCTC  600

seq1  TACTTCTCCTTCTTAACCTTGAGAGGATAAAAGTTGTATTCACAGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCCTTCTTAACCTTGAGAGGATAAAAGTTGTATTCACAGAACTT  650

seq1  GGAATAGTACCTTGGTATATCAGAAGTACCCAGTCTAAGCCTGTTGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTACCTTGGTATATCAGAAGTACCCAGTCTAAGCCTGTTGAATG  700

seq1  GATGAATAAATTCAGTTGAGCCAGATGGCAATGCAGTCCTATTCTTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAAATTCAGTTGAGCCAGATGGCAATGCAGTCCTATTCTTTAAC  750

seq1  ATTTGCAGTAAGGGTGCTATGGAACAGGATTGTTCTTCAGTCTGTTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGTAAGGGTGCTATGGAACAGGATTGTTCTTCAGTCTGTTTCCA  800

seq1  TCCAGACTCTGAGAAGCCAATATTAATGTATACC-TTTTTTCTTACCTTT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCAGACTCTGAGAAGCCAATATTAATGTATACCTTTTTTTCTTACCTTT  850

seq1  TTTCTTATGTCAGCTATATTGAGAAGCTTAATAAGTATACGATACCATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGTCAGCTATATTGAGAAGCTTAATAAGTATACGATACCATAC  900

seq1  AGCCCACAGAGATAAAGTTACATAATTCTCACCCAGGAAAAAACTCATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACAGAGATAAAGTTACATAATTCTCACCCAGGAAAAAACTCATTA  950

seq1  GCTGCATGAAAGGCAAACCAGCAAGTTAATGATTATAAAACTCAGTGTGG  999
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTGCATGAAAGGC-AACCAGCAAGTTAATGATTATAAAACTCAGTGTGG  999

seq1  TAATTGATAAAACTGATGG-AAGGTATTGGGACAATTCAAAAGATAAGTA  1048
      |||||||| |||||||||| ||||||||||||| |||||||  |||||||
seq2  TAATTGAT-AAACTGATGGAAAGGTATTGGGAC-ATTCAAAGAATAAGTA  1047

seq1  CCTCACCCACTATAGTTCTGCAATGCCTTCTAGAGCAAGGTAAGCCCTGA  1098
      ||||||||||||||||||||| |||||||||||||||  ||||| |||||
seq2  CCTCACCCACTATAGTTCTGC-ATGCCTTCTAGAGCA--GTAAG-CCTGA  1093

seq1  GAGTGGTAAAGGGAAAGAACAGAGCAG  1125
      ||||| |||  ||||||||| ||||||
seq2  GAGTGTTAA--GGAAAGAACTGAGCAG  1118


seq1: chr13_31973495_31973860
seq2: B6Ng01-210I04.g_332_697

seq1  --ATATAT-------------ATATTTTTATTAGGTATTTTTCTCATTTA  35
        ||||||             || |||||||| |||||||| ||||||||
seq2  ATATATATCTTTCTTTTTTTAATTTTTTTATTGGGTATTTTCCTCATTTA  50

seq1  CATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCTCCCCCACTCCCC  85
      ||||||||||||||||||||| ||||||||||||||| ||          
seq2  CATTTCCAATGCTATCCCAAACGTCCCCCATACCCTCCCC----------  90

seq1  TACATACCCACTCCCACCTTTTGGCCCTGGCATTCCCCTGTACTGGGGTA  135
           ||| |||||||| | ||||||||||| ||||||||||||| || |
seq2  -----ACCTACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCA  135

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  185
      ||||||||||||| | |||||||||||||||||||| ||||||||| |||
seq2  TATAAAGTTTGCATGACCAATGGGCCTCTCTTTCCACTGATGGCCGGCTA  185

seq1  GGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTTCA--GGGTAC  233
      ||||| |||||||||||||||||| ||||| || ||||| ||  ||||||
seq2  GGCCAACTTTTGATACATATGCAGTTAGAGACACGAGCTCCAGGGGGTAC  235

seq1  TGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGC  283
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCACTTTAGC  285

seq1  TCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCGTGTGATCCATCC  333
      ||||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  TCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGC--TCTGATCCATCC  333

seq1  AATAGCTGACTGTGAGCATCCACTTCTGTGTTT  366
      ||||||||| | |||||||||||||||||||||
seq2  AATAGCTGATTTTGAGCATCCACTTCTGTGTTT  366


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