BAC Information

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BAC

Clone NameB6Ng01-210I10
Chromosome11 (Build37)
Map Location 61,471,798 - 61,617,877
singlet/doubletdoublet
Overlap geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
Upstream geneLOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Downstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210I10.bB6Ng01-210I10.g
ACCGA028843GA028844
length1,1271,130
definitionB6Ng01-210I10.b B6Ng01-210I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,471,798 - 61,472,923)(61,616,723 - 61,617,877)
sequence
gaattccttttcttttccttttgccggtgaaggatggagaaccacaaaca
agtctaaccatgtagtccaaacagacctggaactcaaaaatcctcctgct
ccagctttctaagggctggggagacaggcatgggccaccaaactagctgg
tcctttcttataaatcggggcatctcccacatatgtgtgtgtgcgcgcac
atgcttttcttgagcactctgtgtgcccctctggcagctccttgtccagg
cagtggctccctgacactctttgctgcatgaagctgctgtttgtctctca
ccttctttaaggcatccctggggacaggctcctagcattcatagcacctt
caggactccttttgttgtctgtacccagtaggtgctcaagcaagctgtca
gtgactgcctctgggggcagtagaaaagccagcagcagtcagggccagtg
gtgggacagacaggctctgagcttgacctaggattcagtactaacctgaa
gggtgttctctggggaaggaggtcccacagctccaaaggtccagggctcc
atcagcaataagaattcagcaaggtaagcatagaagcatccttggtctgc
acaaagagatggatggatgcagaacagtacatggctggagttaagggtac
agtggccacataggaattatagcatgagaaactgtgtggttggtcacagc
tatgcccattaacagataagctaatgtctggagcaagtgcagggctccag
ctagtgctggagccaaatccctagagacaacagaagtagccagagctcaa
aagcactggctagaatttccttctcaagctgtggccacattggggaaatt
gtttcatttagagtgaaagtggttctgagccagctacccgcttccatctg
ttcaactacccgcttctgtctgcccagcactgctgaccttcttcaggcca
ggaaggaaggaagggctcagccagcttcagttcctcccccaggtgggggc
tcaggactggactgaggcacagccttttagctgctttcaccttgcagatc
agacatgcagatttattcattccctgtttcttattgcccttggtgcagag
gggggagccagcttcggcagcctgctc
gaattcagggtatgagtgagctctgaaaggatcaccagtaactaagagta
gtggtaaccttcataataagataggagaagctcggaggattggatagaag
aagaaaagagaggaaacttcctcctcttcctcctcctctttctcttcctc
ctcctcttcttcctcaccttcttcctattcctcctcttcctctttctcct
cttctccccctcctcctcttcttcctcctcaccttcttctttcttctcct
cctcctctccttccttccccttctttttttttttaaattacatttgtttt
ttgttttttttgttttttttttttttctgagaccagatctcattttctag
tcctggaactcactatgtagaccaggatgacctagaattcattctatctg
cctccaaattctagaattaaaggcatgtatcaccacagctggctcatttt
acatttttcatttttgcttcttataaccattatgtgtgttccacgtggaa
tgctgttaggagttatcaggaaaaaatatcagaaataaagttctgccctg
ggtcctatcagataggaagtgattctctttcttttcagatctgcagtagt
acgaaggtctaataccagccccatgggcttcctccgggttgggtcctgct
cccctgtaccaggagacacagtgcagacaggaggacgaagactctctact
ggctcttccaggccttactcaccatcccctttgggtgaggagaattgaat
gcagtcaattaaaacctgtttcttccctgtaacaaatctgataaagtaca
ttctcaagataatgaaacagtgcttttaagcagattatattctcaagata
atgaaatagtgcttttaagcagactgtagaacattatctgttgtgctgta
tccttctcccaacttcaccataaaatctctatttgaacctgcaggtggct
cagcagttgcttgtcaggaagcatgagactggagttcagatttgtcagac
tcaaaaaatgctggatggcttggtgacctactgtatctagccctaaggca
aaaatgagatctacctgttcccctagccactgtgactctgcatttgattg
aagacttggtctcaggactatgaggagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61471798_61472923
seq2: B6Ng01-210I10.b_42_1168

seq1  GAATTCCTTTTCTTTTCCTTTTGCCGGTGAAGGATGGAGAACCACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCTTTTCCTTTTGCCGGTGAAGGATGGAGAACCACAAACA  50

seq1  AGTCTAACCATGTAGTCCAAACAGACCTGGAACTCAAAAATCCTCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACCATGTAGTCCAAACAGACCTGGAACTCAAAAATCCTCCTGCT  100

seq1  CCAGCTTTCTAAGGGCTGGGGAGACAGGCATGGGCCACCAAACTAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCTAAGGGCTGGGGAGACAGGCATGGGCCACCAAACTAGCTGG  150

seq1  TCCTTTCTTATAAATCGGGGCATCTCCCACATATGTGTGTGTGCGCGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTATAAATCGGGGCATCTCCCACATATGTGTGTGTGCGCGCAC  200

seq1  ATGCTTTTCTTGAGCACTCTGTGTGCCCCTCTGGCAGCTCCTTGTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCTTGAGCACTCTGTGTGCCCCTCTGGCAGCTCCTTGTCCAGG  250

seq1  CAGTGGCTCCCTGACACTCTTTGCTGCATGAAGCTGCTGTTTGTCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTCCCTGACACTCTTTGCTGCATGAAGCTGCTGTTTGTCTCTCA  300

seq1  CCTTCTTTAAGGCATCCCTGGGGACAGGCTCCTAGCATTCATAGCACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAAGGCATCCCTGGGGACAGGCTCCTAGCATTCATAGCACCTT  350

seq1  CAGGACTCCTTTTGTTGTCTGTACCCAGTAGGTGCTCAAGCAAGCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCCTTTTGTTGTCTGTACCCAGTAGGTGCTCAAGCAAGCTGTCA  400

seq1  GTGACTGCCTCTGGGGGCAGTAGAAAAGCCAGCAGCAGTCAGGGCCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGCCTCTGGGGGCAGTAGAAAAGCCAGCAGCAGTCAGGGCCAGTG  450

seq1  GTGGGACAGACAGGCTCTGAGCTTGACCTAGGATTCAGTACTAACCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGACAGGCTCTGAGCTTGACCTAGGATTCAGTACTAACCTGAA  500

seq1  GGGTGTTCTCTGGGGAAGGAGGTCCCACAGCTCCAAAGGTCCAGGGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTCTGGGGAAGGAGGTCCCACAGCTCCAAAGGTCCAGGGCTCC  550

seq1  ATCAGCAATAAGAATTCAGCAAGGTAAGCATAGAAGCATCCTTGGTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAATAAGAATTCAGCAAGGTAAGCATAGAAGCATCCTTGGTCTGC  600

seq1  ACAAAGAGATGGATGGATGCAGAACAGTACATGGCTGGAGTTAAGGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGATGGATGGATGCAGAACAGTACATGGCTGGAGTTAAGGGTAC  650

seq1  AGTGGCCACATAGGAATTATAGCATGAGAAACTGTGTGGTTGGTCACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCACATAGGAATTATAGCATGAGAAACTGTGTGGTTGGTCACAGC  700

seq1  TATGCCCATTAACAGATAAGCTAATGTCTGGAGCAAGTGCAGGGCTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCATTAACAGATAAGCTAATGTCTGGAGCAAGTGCAGGGCTCCAG  750

seq1  CTAGTGCTGGAGCCAAATCCCTAGAGACAACAGAAGTAGCCAGAGCTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTGGAGCCAAATCCCTAGAGACAACAGAAGTAGCCAGAGCTCAA  800

seq1  AAGCACTGGCTAGAATTTCCTTCTCAAGCTGTGGCCACATTGGGGAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGGCTAGAATTTCCTTCTCAAGCTGTGGCCACATTGGGGAAATT  850

seq1  GTTTCATTTAGAGTGAAAGTGGTTCTGAGCCAGCTACCCGCTTCCATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTAGAGTGAAAGTGGTTCTGAGCCAGCTACCCGCTTCCATCTG  900

seq1  TTCAACTACCCGCTTCTGTCTGCCCAGCACTGCTGACCTTCTTCAGGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTACCCGCTTCTGTCTGCCCAGCACTGCTGACCTTCTTCAGGCCA  950

seq1  GGAAGGAAGGAAGGGCTCAGCCAGGCTTCAGTTCCTCCCCCAGGGTGGGG  1000
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GGAAGGAAGGAAGGGCTCAGCCA-GCTTCAGTTCCTCCCCCA-GGTGGGG  998

seq1  GCTCAGGACTGGACTGAGGCACAAGCCTTTTAGCTGCTTTTCACTTGCAG  1050
      |||||||||||||||||||||| |||||||||||||||||   |||||||
seq2  GCTCAGGACTGGACTGAGGCAC-AGCCTTTTAGCTGCTTTCACCTTGCAG  1047

seq1  ATCAGACATGCAGATATATCAATTTCCCTGTTTC-TATTGCCC-TGGTGC  1098
      ||||||||||||||| |||  | ||||||||||| |||||||| ||||||
seq2  ATCAGACATGCAGATTTATTCA-TTCCCTGTTTCTTATTGCCCTTGGTGC  1096

seq1  AGA--GGGGAGCCAGC-TCTGCAGCCTGCTC  1126
      |||  ||||||||||| || |||||||||||
seq2  AGAGGGGGGAGCCAGCTTCGGCAGCCTGCTC  1127

seq1: chr11_61616723_61617877
seq2: B6Ng01-210I10.g_65_1194 (reverse)

seq1  ATTCTTCCTCCATAGTCTTTGAGACACAGTCTCTCAATCAAATGCAGAAG  50
      |||| |||| |||||||  ||||||  ||||| |||||||||||||| ||
seq2  ATTC-TCCT-CATAGTC-CTGAGACCAAGTCT-TCAATCAAATGCAG-AG  45

seq1  TCACCAGTTTGCTAGGGGGAAACAGGTAGGAATCTCCTTTTTTTGCCTTT  100
      ||| ||| | ||||||||  |||||||||  |||||   ||||||||  |
seq2  TCA-CAG-TGGCTAGGGG--AACAGGTAG--ATCTC--ATTTTTGCC--T  85

seq1  TAGGGCTAGAATTACAGGTAGGTCACCAAACCCATCCAGCATTTTTTTGA  150
      ||||||||||  |||| |||||||||| || |||||||||| ||||||||
seq2  TAGGGCTAGA--TACA-GTAGGTCACC-AAGCCATCCAGCA-TTTTTTGA  130

seq1  GTTCTGACAAATCTGAACTCCAGTCTTCATGCTTCCCTGACAAGCAACTG  200
      | ||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  G-TCTGACAAATCTGAACTCCAGTC-TCATGCTT-CCTGACAAGCAACTG  177

seq1  CTGAGCCACCCTGCAGGTTCAAATAGAGATTTTTATGGTGAAGTTGGGAG  250
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CTGAGCCA-CCTGCAGGTTCAAATAGAGA-TTTTATGGTGAAGTTGGGAG  225

seq1  AAGGATACAGCACAACAGATAATGTTCTACAGTCTGCTTAAAAGCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACAGCACAACAGATAATGTTCTACAGTCTGCTTAAAAGCACTAT  275

seq1  TTCATTATCTTGAGAATATAATCTGCTTAAAAGCACTGTTTCATTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATCTTGAGAATATAATCTGCTTAAAAGCACTGTTTCATTATCTT  325

seq1  GAGAATGTACTTTATCAGATTTGTTACAGGGAAGAAACAGGTTTTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTACTTTATCAGATTTGTTACAGGGAAGAAACAGGTTTTAATTG  375

seq1  ACTGCATTCAATTCTCCTCACCCAAAGGGGATGGTGAGTAAGGCCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTCAATTCTCCTCACCCAAAGGGGATGGTGAGTAAGGCCTGGAA  425

seq1  GAGCCAGTAGAGAGTCTTCGTCCTCCTGTCTGCACTGTGTCTCCTGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGTAGAGAGTCTTCGTCCTCCTGTCTGCACTGTGTCTCCTGGTAC  475

seq1  AGGGGAGCAGGACCCAACCCGGAGGAAGCCCATGGGGCTGGTATTAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGCAGGACCCAACCCGGAGGAAGCCCATGGGGCTGGTATTAGACC  525

seq1  TTCGTACTACTGCAGATCTGAAAAGAAAGAGAATCACTTCCTATCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTACTACTGCAGATCTGAAAAGAAAGAGAATCACTTCCTATCTGATA  575

seq1  GGACCCAGGGCAGAACTTTATTTCTGATATTTTTTCCTGATAACTCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGGGCAGAACTTTATTTCTGATATTTTTTCCTGATAACTCCTAA  625

seq1  CAGCATTCCACGTGGAACACACATAATGGTTATAAGAAGCAAAAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCCACGTGGAACACACATAATGGTTATAAGAAGCAAAAATGAAA  675

seq1  AATGTAAAATGAGCCAGCTGTGGTGATACATGCCTTTAATTCTAGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATGAGCCAGCTGTGGTGATACATGCCTTTAATTCTAGAATTT  725

seq1  GGAGGCAGATAGAATGAATTCTAGGTCATCCTGGTCTACATAGTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGATAGAATGAATTCTAGGTCATCCTGGTCTACATAGTGAGTTC  775

seq1  CAGGACTAGAAAATGAGATCTGGTCTCAGAAAAAAAAAAAAAACAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTAGAAAATGAGATCTGGTCTCAGAAAAAAAAAAAAAACAAAAAA  825

seq1  AACAAAAAACAAATGTAATTTAAAAAAAAAAAGAAGGGGAAGGAAGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAAATGTAATTTAAAAAAAAAAAGAAGGGGAAGGAAGGAGA  875

seq1  GGAGGAGGAGAAGAAAGAAGAAGGTGAGGAGGAAGAAGAGGAGGAGGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGAAGAAAGAAGAAGGTGAGGAGGAAGAAGAGGAGGAGGGGG  925

seq1  AGAAGAGGAGAAAGAGGAAGAGGAGGAATAGGAAGAAGGTGAGGAAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAGAAAGAGGAAGAGGAGGAATAGGAAGAAGGTGAGGAAGAAG  975

seq1  AGGAGGAGGAAGAGAAAGAGGAGGAGGAAGAGGAGGAAGTTTCCTCTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAAGAGAAAGAGGAGGAGGAAGAGGAGGAAGTTTCCTCTCTT  1025

seq1  TTCTTCTTCTATCCAATCCTCCGAGCTTCTCCTATCTTATTATGAAGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTATCCAATCCTCCGAGCTTCTCCTATCTTATTATGAAGGTT  1075

seq1  ACCACTACTCTTAGTTACTGGTGATCCTTTCAGAGCTCACTCATACCCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTACTCTTAGTTACTGGTGATCCTTTCAGAGCTCACTCATACCCTG  1125

seq1  AATTC  1155
      |||||
seq2  AATTC  1130