BAC Information

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BAC

Clone NameB6Ng01-211A07
Chromosome11 (Build37)
Map Location 52,421,659 - 52,606,392
singlet/doubletdoublet
Overlap geneFstl4
Upstream geneNola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211A07.bB6Ng01-211A07.g
ACCGA029205GA029206
length1,129558
definitionB6Ng01-211A07.b B6Ng01-211A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,605,273 - 52,606,392)(52,421,659 - 52,422,222)
sequence
gaattcctgtggccccgccttaaagtcaggtcaaaatggaaaggtgaagc
tggcccgtggaagagacatgaagatgctggggtagctgagggagttttga
ctcacatcattggtcctggcacctgtccatcaaccctgcccacaggctgc
ctgggctgatgagccctgtcttgcttacatactaccacaggagcgcaagg
accaaaggggaaaagctgagcctgtctacatggacagagaaagtgggatt
acacttagctaaaacacaagtaggaaggtgaacaaattctgtgcaccttc
tagttcctgtctaacgacaagtagacctatgtaaagaaacctgagttcac
aaaacagtggaaaggctaaaataactaagccagagaatttgaagggaggc
ttcacacacacacacacacacacacacacacacacacacacagcgtgcgg
ggatgggggcagagacacacagacagacacagggagacagtgggagagag
aagtagctcaattccaggttccatccccagcaccacgtaagctggctgtg
atggtgagtgaccacagtcccagcacttgggaggtagagaagagggaagc
aggagctcagggtccttcttagctatatagagagtttgaggccatcctgg
gctacatgaaaccctctactcattcacccccttacccccccccaaaatca
tgtccatctgatttttttaaagatttatttattatatataagtacactgt
agctatcttcagacataccagaggagggccaatcttattacagatggttg
tgagccaccatgcggttactgggaattgaactcaggacctctggaagaac
agtcggtgctcttaaccaatgagccatctctccagtcctgattttttttt
tttaaatcaaagtagtctctttactggtgaggtaattttctgactttact
attaaaaattattaagtgataagcccatgaatagcattccaggactgcac
acctgggattatcaattttgctagctcggattaaaaaaaaaaaccaactg
ggcagtttactttgggccacccaaaggtctctgatggtcagagagatctg
atttggattagcaagctgcttatgttggc
tttggaggtttactcatccttttctggcatacatatgtcttgtatatatt
gtgattattcattactgctcaatagattcaattagcagaatgagataaat
gtaacagactgctgtgattttttttctataggctaacaagacagttaata
tggtattgtgacaaaatacagactatattatggcagagaactggagagtt
gatgacagctgacagataagacaatgagagtgtactgttgctgtgccatg
tgcaaacaagtgattcttattatttgaattgacttggatctgttgggtca
ataactgaatggtaggttcttatgcaagggatgataaagaaccaattcag
tgaagaatttcatttcggccaacaaagaagtttctagaagattttggaat
tcaaaattgccaccagggagtggcactatttgaaaggattataaggatta
ggaagtgtggccttgttggagtaactgtatcactgcaggtggctttgagg
tttcaaaagcctgcgacagggtctctctctctctctctctctctctctct
ctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52605273_52606392
seq2: B6Ng01-211A07.b_48_1176 (reverse)

seq1  GCCAACAT-AGCAGC-TGCTAAT-CAAATCAGA--TCTCTGACCCATCAG  45
      |||||||| |||||| ||||||| |||||||||  ||||||| |||||||
seq2  GCCAACATAAGCAGCTTGCTAATCCAAATCAGATCTCTCTGA-CCATCAG  49

seq1  AGAC--TTTGGTGGCCC-AAGT-AACTGCCCAGTT-GTTTTTTTTTTTAA  90
      ||||  || |||||||| |||| |||||||||||| ||||||||||||||
seq2  AGACCTTTGGGTGGCCCAAAGTAAACTGCCCAGTTGGTTTTTTTTTTTAA  99

seq1  T-CGAGCTAGCAAAATTGATATTCCCAGGTGTGCAGT-CTGGAATGCTAT  138
      | ||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TCCGAGCTAGCAAAATTGATAATCCCAGGTGTGCAGTCCTGGAATGCTAT  149

seq1  TCATGGGCTTATCACTTTAATAATTTTTAATAGTAAAGTCAGAAAATTAC  188
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTTATCAC-TTAATAATTTTTAATAGTAAAGTCAGAAAATTAC  198

seq1  CTCACCAGTAAAGAGACTACTTTGATTTAAAAAAAAAAAATCAGGACTGG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGTAAAGAGACTACTTTGATTTAAAAAAAAAAAATCAGGACTGG  248

seq1  AGAGATGGCTCATTGGTTAAGAGCACCGACTGTTCTTCCAGAGGTCCTGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCATTGGTTAAGAGCACCGACTGTTCTTCCAGAGGTCCTGA  298

seq1  GTTCAATTCCCAGTAACCGCATGGTGGCTCACAACCATCTGTAATAAGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGTAACCGCATGGTGGCTCACAACCATCTGTAATAAGAT  348

seq1  TGGCCCTCCTCTGGTATGTCTGAAGATAGCTACAGTGTACTTATATATAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCCTCTGGTATGTCTGAAGATAGCTACAGTGTACTTATATATAA  398

seq1  TAAATAAATCTTTAAAAAAATCAGATGGACATGATTTTGGGGGGGGGGTA  438
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAATAAATCTTTAAAAAAATCAGATGGACATGATTTT-GGGGGGGGGTA  447

seq1  AGGGGGTGAATGAGTAGAGGGTTTCATGTAGCCCAGGATGGCCTCAAACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGAATGAGTAGAGGGTTTCATGTAGCCCAGGATGGCCTCAAACT  497

seq1  CTCTATATAGCTAAGAAGGACCCTGAGCTCCTGCTTCCCTCTTCTCTACC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATAGCTAAGAAGGACCCTGAGCTCCTGCTTCCCTCTTCTCTACC  547

seq1  TCCCAAGTGCTGGGACTGTGGTCACTCACCATCACAGCCAGCTTACGTGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGACTGTGGTCACTCACCATCACAGCCAGCTTACGTGG  597

seq1  TGCTGGGGATGGAACCTGGAATTGAGCTACTTCTCTCTCCCACTGTCTCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGATGGAACCTGGAATTGAGCTACTTCTCTCTCCCACTGTCTCC  647

seq1  CTGTGTCTGTCTGTGTGTCTCTGCCCCCATCCCCGCACGCTGTGTGTGTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTCTGTGTGTCTCTGCCCCCATCCCCGCACGCTGTGTGTGTG  697

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCCTCCCTTCAAATTCTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCCTCCCTTCAAATTCTC  747

seq1  TGGCTTAGTTATTTTAGCCTTTCCACTGTTTTGTGAACTCAGGTTTCTTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGTTATTTTAGCCTTTCCACTGTTTTGTGAACTCAGGTTTCTTT  797

seq1  ACATAGGTCTACTTGTCGTTAGACAGGAACTAGAAGGTGCACAGAATTTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTCTACTTGTCGTTAGACAGGAACTAGAAGGTGCACAGAATTTG  847

seq1  TTCACCTTCCTACTTGTGTTTTAGCTAAGTGTAATCCCACTTTCTCTGTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTCCTACTTGTGTTTTAGCTAAGTGTAATCCCACTTTCTCTGTC  897

seq1  CATGTAGACAGGCTCAGCTTTTCCCCTTTGGTCCTTGCGCTCCTGTGGTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACAGGCTCAGCTTTTCCCCTTTGGTCCTTGCGCTCCTGTGGTA  947

seq1  GTATGTAAGCAAGACAGGGCTCATCAGCCCAGGCAGCCTGTGGGCAGGGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGCAAGACAGGGCTCATCAGCCCAGGCAGCCTGTGGGCAGGGT  997

seq1  TGATGGACAGGTGCCAGGACCAATGATGTGAGTCAAAACTCCCTCAGCTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACAGGTGCCAGGACCAATGATGTGAGTCAAAACTCCCTCAGCTA  1047

seq1  CCCCAGCATCTTCATGTCTCTTCCACGGGCCAGCTTCACCTTTCCATTTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCATCTTCATGTCTCTTCCACGGGCCAGCTTCACCTTTCCATTTT  1097

seq1  GACCTGACTTTAAGGCGGGGCCACAGGAATTC  1120
      ||||||||||||||||||||||||||||||||
seq2  GACCTGACTTTAAGGCGGGGCCACAGGAATTC  1129

seq1: chr11_52421659_52422222
seq2: B6Ng01-211A07.g_69_632

seq1  GAATTCTTTGGAGGTTTACTCATCCTTTTCTGGCATACATATGTCTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAGGTTTACTCATCCTTTTCTGGCATACATATGTCTTGTA  50

seq1  TATATTGTGATTATTCATTACTGCTCAATAGATTCAATTAGCAGAATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTGATTATTCATTACTGCTCAATAGATTCAATTAGCAGAATGAG  100

seq1  ATAAATGTAACAGACTGCTGTGATTTTTTTTCTATAGGCTAACAAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAACAGACTGCTGTGATTTTTTTTCTATAGGCTAACAAGACAG  150

seq1  TTAATATGGTATTGTGACAAAATACAGACTATATTATGGCAGAGAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGGTATTGTGACAAAATACAGACTATATTATGGCAGAGAACTGG  200

seq1  AGAGTTGATGACAGCTGACAGATAAGACAATGAGAGTGTACTGTTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGATGACAGCTGACAGATAAGACAATGAGAGTGTACTGTTGCTGT  250

seq1  GCCATGTGCAAACAAGTGATTCTTATTATTTGAATTGACTTGGATCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGCAAACAAGTGATTCTTATTATTTGAATTGACTTGGATCTGTT  300

seq1  GGGTCAATAACTGAATGGTAGGTTCTTATGCAAGGGATGATAAAGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATAACTGAATGGTAGGTTCTTATGCAAGGGATGATAAAGAACCA  350

seq1  ATTCAGTGAAGAATTTCATTTCGGCCAACAAAGAAGTTTCTAGAAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAAGAATTTCATTTCGGCCAACAAAGAAGTTTCTAGAAGATTT  400

seq1  TGGAATTCAAAATTGCCACCAGGGAGTGGCACTATTTGAAAGGATTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCAAAATTGCCACCAGGGAGTGGCACTATTTGAAAGGATTATAA  450

seq1  GGATTAGGAAGTGTGGCCTTGTTGGAGTAACTGTATCACTGCAGGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGGAAGTGTGGCCTTGTTGGAGTAACTGTATCACTGCAGGTGGCT  500

seq1  TTGAGGTTTCAAAAGCCTGCGACAGGGTCTCTCTCTCTCTCTCTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTTCAAAAGCCTGCGACAGGGTCTCTCTCTCTCTCTCTCTCTCT  550

seq1  CTCTCTCTCTCTCT  564
      ||||||||||||||
seq2  CTCTCTCTCTCTCT  564