BAC Information

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BAC

Clone NameB6Ng01-211F05
Chromosome11 (Build37)
Map Location 42,410,059 - 42,411,248
singlet/doubletsinglet
Overlap geneGabrb2
Upstream geneGabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211F05.bB6Ng01-211F05.g
ACCGA029423GA029424
length1,0621,162
definitionB6Ng01-211F05.b B6Ng01-211F05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagcagaggactcttgaaaggctgagaaccactttaagaaata
tgcaaagtccttagtcatcagagaaatgcaagtcaaaacaactctgaagt
tccatcttataaccatcagaatggcaaagattaaaaactcaagggacagc
acatgctggcaaggatgtgaagcagggagaacactcctccattactagtg
ggagtgcaaacttgaacaatgttggaaatcaatttggtggtttctcagaa
aattgggaatagatgtagcgcaagacccagctattcaattcctgagtata
taccccaaagattctacagcatcccacaaagacacttaaacagctatgct
ccttttgtagcagcttcattcataatagcagaaactagaaacaaccttaa
tgtcctcaactgaagaatggataaagaaaatgtggtacatctacacaatg
caatattattcagctattaaaaataaaagatatcatgaattttgctggca
catggatgtcacctaagacgatcatactgagtaaggtaatccagtccaaa
aatggtatggatggcagaagtggaaactagctatcaaatatgctccacaa
acccacagaagctaaacaagaaggaaggcccaagcaaggctgcttgaatc
tcatttagaaggaggaataatatagctataagaagcagacgaaatgaggg
aactgggtggcagaggtggagaggaatggggaaggggttcaggactgggt
gtggggaaggacaggagagatggccatatggctatgaaaatgaatgaaaa
ccctgaagctgaagggattgaggaggtggctggcagctccaagatgtgac
agagacctgggatatgggaggtgcccaaaagtcagttggggttaacctta
gctgtgactcacagcattggggatcatggaaacctgcctattgccaggca
gaaactcagtgactgataatcatctacacatcttcaaactccattttttt
cctgtcctcaagaactggcggggattggggatagagcaaagacttgaagg
gaaccaattaac
gaattccaaatatttttaccttccagtggcatctctgagactcactgttc
tctactgttagagatgcctgcttactagacaagcaattatagcctgaggt
cacatctccaatatggaccactgtaactgacttgtgtctcatgtctgtgt
gttatgtattcaattgcccaattcaaaatcataagcactctagtttctgt
ttctttaaccctatgcctctgtctttcaaatgtttgtactagtttgtgta
tgttatctgcacaatgcattcagagatccgtatctgctctttcaatttac
ctttccattgtttatatggattatcatggaaacctttaacctagtattct
ttctttctgccttatattgcattccttcattcccatgctgctcccaggtg
atttcttaaattcaatatatccatttttatgcttacctacctttatgtag
ccagcattgggcattatctttaagtaagcaagctttcatttgacctccat
tcttccaatatatctgtatatatttgaaaatcttgaatcttattaaagag
ctgtgaattccctgtaatccaacctttatgcaaagttttcctacccatga
catcctggggtttgctgtaacctttcatctttagtccctggttgattaag
caacagccactaatttttcagaagcaccttcaaaaaaatctccattcttg
acactgacatatcaggaatatgaactaggatttccaattctctacttcat
aaataagtataaatagaaaaatacagttaaagaataatttccataaaaat
tcatgttcactttaagttaattttcacataattccaggaaagggtcacta
ggcagatttacaacaaatttccatcaaatagataagtatctataaataag
ctagcttttctagatattatgagaacagtaaggaaacaggaatgttatta
ctctaattttttttaccctttctttttttcagatacaactgtcctaacaa
tgaccacatcacaccacctcgggaaactctcctaatccctatgtcaagca
ttgacatgtacctaatgggtgctttgtcttcgtctttatgaccctttgat
acgcatgttcactacatcttccttggagacccagcgtcgaagaagcagct
gaaaaagctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42410059_42411248
seq2: B6Ng01-211F05.g_64_1225

seq1  GAATTCCAAATATTTTTACCTTCCAGTGGCATCTCTGAGACTCACTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATTTTTACCTTCCAGTGGCATCTCTGAGACTCACTGTTC  50

seq1  TCTACTGTTAGAGATGCCTGCTTACTAGACAAGCAATTATAGCCTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTTAGAGATGCCTGCTTACTAGACAAGCAATTATAGCCTGAGGT  100

seq1  CACATCTCCAATATGGACCACTGTAACTGACTTGTGTCTCATGTCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCCAATATGGACCACTGTAACTGACTTGTGTCTCATGTCTGTGT  150

seq1  GTTATGTATTCAATTGCCCAATTCAAAATCATAAGCACTCTAGTTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTATTCAATTGCCCAATTCAAAATCATAAGCACTCTAGTTTCTGT  200

seq1  TTCTTTAACCCTATGCCTCTGTCTTTCAAATGTTTGTACTAGTTTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAACCCTATGCCTCTGTCTTTCAAATGTTTGTACTAGTTTGTGTA  250

seq1  TGTTATCTGCACAATGCATTCAGAGATCCGTATCTGCTCTTTCAATTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGCACAATGCATTCAGAGATCCGTATCTGCTCTTTCAATTTAC  300

seq1  CTTTCCATTGTTTATATGGATTATCATGGAAACCTTTAACCTAGTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTGTTTATATGGATTATCATGGAAACCTTTAACCTAGTATTCT  350

seq1  TTCTTTCTGCCTTATATTGCATTCCTTCATTCCCATGCTGCTCCCAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCCTTATATTGCATTCCTTCATTCCCATGCTGCTCCCAGGTG  400

seq1  ATTTCTTAAATTCAATATATCCATTTTTATGCTTACCTACCTTTATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAAATTCAATATATCCATTTTTATGCTTACCTACCTTTATGTAG  450

seq1  CCAGCATTGGGCATTATCTTTAAGTAAGCAAGCTTTCATTTGACCTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTGGGCATTATCTTTAAGTAAGCAAGCTTTCATTTGACCTCCAT  500

seq1  TCTTCCAATATATCTGTATATATTTGAAAATCTTGAATCTTATTAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAATATATCTGTATATATTTGAAAATCTTGAATCTTATTAAAGAG  550

seq1  CTGTGAATTCCCTGTAATCCAACCTTTATGCAAAGTTTTCCTACCCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTCCCTGTAATCCAACCTTTATGCAAAGTTTTCCTACCCATGA  600

seq1  CATCCTGGGGTTTGCTGTAACCTTTCATCTTTAGTCCCTGGTTGATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGGGTTTGCTGTAACCTTTCATCTTTAGTCCCTGGTTGATTAAG  650

seq1  CAACAGCCACTAATTTTTCAGAAAGCACCTTCAAAAAAATCTCCATTCTT  700
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACAGCCACTAATTTTTCAG-AAGCACCTTCAAAAAAATCTCCATTCTT  699

seq1  GACACTGACATATCAGGAATATGAACTAGGATTTCCAATTCTCTACTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGACATATCAGGAATATGAACTAGGATTTCCAATTCTCTACTTCA  749

seq1  TAAATAAGTATAAATAGAAAAATACAGTTAAAGAATAATTTCCATAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTATAAATAGAAAAATACAGTTAAAGAATAATTTCCATAAAAA  799

seq1  TTCATGTTCACTTTAAGTTAATTTTCACATAATTCCAGG-AAGGGTCACT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCATGTTCACTTTAAGTTAATTTTCACATAATTCCAGGAAAGGGTCACT  849

seq1  AGGCAGATTTACAACAAATTTCCATCAAATAGATAAGTATCTATAAATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTACAACAAATTTCCATCAAATAGATAAGTATCTATAAATAA  899

seq1  GCTAGCTTTTCTAGATATTATGAGAACAGTAAGGAAACAGGAATGTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTTTCTAGATATTATGAGAACAGTAAGGAAACAGGAATGTTATT  949

seq1  ACTCTAATTTTTTTTTACCCTTTCTTTTTTTTCAGGAATTACAACTGTCC  999
      ||||||| |||||||||||||||| ||||||||||    |||||||||||
seq2  ACTCTAA-TTTTTTTTACCCTTTC-TTTTTTTCAG---ATACAACTGTCC  994

seq1  TAACAATGACCACAATCAACACCCACCTCCGGGAAACTCTCCCTAAAATC  1049
      ||||||||||||| ||| ||| |||||| ||||||||||| |||||    
seq2  TAACAATGACCAC-ATC-ACA-CCACCT-CGGGAAACTCT-CCTAA---T  1036

seq1  CCCTATGTCAAAGCCATTGACATGTACCTAATGGGGTGCTTTGTCTTCGT  1099
      |||||||||||   |||||||||||||||||| |||||||||||||||||
seq2  CCCTATGTCAA--GCATTGACATGTACCTAAT-GGGTGCTTTGTCTTCGT  1083

seq1  CTTTATGGCCCTTCTGGAATACGCTTTGGTCAACTACATCTTCTTTGGGA  1149
      ||||||| ||||| ||  |||||| |  ||  ||||||||||| || |||
seq2  CTTTATGACCCTT-TG--ATACGCAT--GTTCACTACATCTTCCTT-GGA  1127

seq1  GAGGACCCCAGCGCCAAAAGAAAGCAGCTGAGAAAGCTGCT  1190
      ||    ||||||| | ||   |||||||||| |||||||||
seq2  GA----CCCAGCGTCGAA--GAAGCAGCTGAAAAAGCTGCT  1162