BAC Information

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BAC

Clone NameB6Ng01-212L08
Chromosome11 (Build37)
Map Location 9,614,580 - 9,751,581
singlet/doubletdoublet
Overlap geneLOC665435
Upstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212L08.bB6Ng01-212L08.g
ACCGA030438GA030439
length7531,184
definitionB6Ng01-212L08.b B6Ng01-212L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,614,580 - 9,615,323)(9,750,390 - 9,751,581)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttatttcttacatcttcaggagccagggtgcaggaagcaag
agagcaagaagcaagagagagagaagacgaaaccccgtccctcttaagga
gcattctccttcgccttggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacagtgatgaa
caagcagtagattttaatgaatgtttctggcacgttagtgttatggccac
tattaatgttagtgtcatggccactattgaatgaagtcaaaacaacagtg
accctgaggctctagcatagtgttattcatagtctgatctttggtagtgt
gggaaagatatgcagtgtgggtaatttctttgtgcttcagaggagtaata
atatttgggaggggcgatagttgattataggagttcgatgaggggagtac
ata

gaattcatggagggaattctgataatggccatccatgatttgggagaagg
ttgaggcctcatgtattttaaaagaaaaagaacaacttcatttctctgag
aaagaaagaagatggatgatttaagagaaggtagttcctggaaaccaaat
agtccagtgaataggatattgaaacatggtgattggaacaccttacttgc
agatctaataatgtgagcttaatgcctgtaagagttccatgtaggaaagg
acaagtaagccaaggaaatctatagaactctagacactaggagtaagagt
tcattataataacaaccgagaaatgacttgattgtttttgagttgtggtc
ccttgatcatcagtacaataaaattaccatacagtatgtgaaaggacggt
aactgcagaaggttaagccacaaagtctcaaccttgtgtgtgaagttgaa
gatagagaaagatctagtcttagattacaaaggattgtatggagagaagc
acaccgtcttcccccatcttctcctatgctggaagttacagttttcagca
actttggtgaaaattggcaagcctgctgtgatatttgctataaccacata
ctactctttctaatgtaaacttttagaaaatatactctgattccagagac
tttaaggctctcattttgtcaaattgcctgacatttctgaatcctggcca
aaaaaacatcacttagaaaactgtatagacagagggaaagataacagtgt
ccctgaagtaagcaacttccaggcaactttctatctaaatagctttgtaa
tacctggtctcaccatcccaacccccaccccatcttctccaattggtccc
agtttcttccttcaccatgatctccttctgacaaggtataactagcatgc
acttctttgtggagagttactaaaattttgacttcttgtttagaatgatt
tcttattttatttaagatgtccactactactttcagatttttttcctttt
ctgaattaattcccattctataggaatagccagttccaatcacgattgca
aatgactagacttatattcatttactttccagtgatgcgatgggcggtca
ggtttctatgctctgttctgacttagattcaatcaaacggcgacaattcc
actccaagggaagcctatgaagaatgaatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9614580_9615323
seq2: B6Ng01-212L08.b_42_794

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200

seq1  GGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGAAGCAAG  250

seq1  AGAGCAAGAAGCAAGAGAGAGAGAAGACGAAACCCCGTCCCTCTTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAAGCAAGAGAGAGAGAAGACGAAACCCCGTCCCTCTTAAGGA  300

seq1  GCATTCTCCTTCGCCTTGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCCTTCGCCTTGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  350

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  400

seq1  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  450

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGTGATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGTGATGAA  500

seq1  CAAGCAGTAGATTTTAATGAATGTTTCTGGCACGTTAGTGTTATGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTAGATTTTAATGAATGTTTCTGGCACGTTAGTGTTATGGCCAC  550

seq1  TATTAATGTTAGTGTCATGGCCACTATTGAATGAAGTCAAAACAACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGTTAGTGTCATGGCCACTATTGAATGAAGTCAAAACAACAGTG  600

seq1  ACCCTGAGGCTCTAGCATAGTGTTATTCATAGTCTGATCTTTGGTAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGGCTCTAGCATAGTGTTATTCATAGTCTGATCTTTGGTAGTGT  650

seq1  GGGAAAGATATGCAGTGTGGGT-ATTTCTTTGTGCTTCAGA-GAGT-ATA  697
      |||||||||||||||||||||| |||||||||||||||||| |||| |||
seq2  GGGAAAGATATGCAGTGTGGGTAATTTCTTTGTGCTTCAGAGGAGTAATA  700

seq1  ATATTTGG--AGGGCAATAG-TGA-TATAGGAGTT-GATGA-GGGAGTAC  741
      ||||||||   |||| |||| ||| |||||||||| ||||| ||||||||
seq2  ATATTTGGGAGGGGCGATAGTTGATTATAGGAGTTCGATGAGGGGAGTAC  750

seq1  ATA  744
      |||
seq2  ATA  753


seq1: chr11_9750390_9751581
seq2: B6Ng01-212L08.g_65_1248 (reverse)

seq1  TCATCATACAATCTTCATA-GCTCTCCTGTGAGTGGATATTGTTCTGCCG  49
      ||||||| || |||||||| |||  |||  ||||||| |||||   ||||
seq2  TCATCATTCATTCTTCATAGGCTTCCCTTGGAGTGGA-ATTGT--CGCCG  47

seq1  TTTGATTGAATACCTAGTCAAGAACCAGGAGCATTAAGAAA-CTGA-CGC  97
      ||||||||||| |  |||| |||||   ||||||  ||||| |||| |||
seq2  TTTGATTGAAT-CTAAGTC-AGAAC--AGAGCAT--AGAAACCTGACCGC  91

seq1  ACATTCGCATTCACTGG-AAGTAAATGGAATATAAGTCTTAGGTTCATTT  146
       || ||||| ||||||| |||||||| ||||||||||| |||  ||||||
seq2  CCA-TCGCA-TCACTGGAAAGTAAAT-GAATATAAGTC-TAG--TCATTT  135

seq1  TGCATCGTGATTGG-ACTGGCTATTTCTATAGAATGGG-ATTAATTCAG-  193
         ||||||||||| |||||||||| |||||||||||| |||||||||| 
seq2  GCAATCGTGATTGGAACTGGCTATTCCTATAGAATGGGAATTAATTCAGA  185

seq1  AAAGGAAAAAAATCTGAAAGTAGTAGTGGACATCTTAAATAAAATAAGAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAAAATCTGAAAGTAGTAGTGGACATCTTAAATAAAATAAGAA  235

seq1  ATCATTCTAAACAAGAAGTCAAAATTTTAGTAACTCTCCACAAAGAAGTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTAAACAAGAAGTCAAAATTTTAGTAACTCTCCACAAAGAAGTG  285

seq1  CATGCTAGTTATACCTTTGTCAGAAGGAGATCATGGTGAAGGAAGAAACT  343
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATGCTAGTTATACC-TTGTCAGAAGGAGATCATGGTGAAGGAAGAAACT  334

seq1  -GGACCAATTGGAGAAGATGGGGTGGGGGTTGGGATGGTGAGACCAGGTA  392
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAATTGGAGAAGATGGGGTGGGGGTTGGGATGGTGAGACCAGGTA  384

seq1  TTACAAAGCTATTTAGATAGAAAGTTGCCTGGAAGTTGCTTACTTCAGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCTATTTAGATAGAAAGTTGCCTGGAAGTTGCTTACTTCAGGG  434

seq1  ACACTGTTATCTTTCCCTCTGTCTATACAGTTTTCTAAGTGATGTTTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTATCTTTCCCTCTGTCTATACAGTTTTCTAAGTGATGTTTTTT  484

seq1  TGGCCAGGATTCAGAAATGTCAGGCAATTTGACAAAATGAGAGCCTTAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGATTCAGAAATGTCAGGCAATTTGACAAAATGAGAGCCTTAAA  534

seq1  GTCTCTGGAATCAGAGTATATTTTCTAAAAGTTTACATTAGAAAGAGTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGAATCAGAGTATATTTTCTAAAAGTTTACATTAGAAAGAGTAG  584

seq1  TATGTGGTTATAGCAAATATCACAGCAGGCTTGCCAATTTTCACCAAAGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTATAGCAAATATCACAGCAGGCTTGCCAATTTTCACCAAAGT  634

seq1  TGCTGAAAACTGTAACTTCCAGCATAGGAGAAGATGGGGGAAGACGGTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAACTGTAACTTCCAGCATAGGAGAAGATGGGGGAAGACGGTGT  684

seq1  GCTTCTCTCCATACAATCCTTTGTAATCTAAGACTAGATCTTTCTCTATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTCCATACAATCCTTTGTAATCTAAGACTAGATCTTTCTCTATC  734

seq1  TTCAACTTCACACACAAGGTTGAGACTTTGTGGCTTAACCTTCTGCAGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTCACACACAAGGTTGAGACTTTGTGGCTTAACCTTCTGCAGTT  784

seq1  ACCGTCCTTTCACATACTGTATGGTAATTTTATTGTACTGATGATCAAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCCTTTCACATACTGTATGGTAATTTTATTGTACTGATGATCAAGG  834

seq1  GACCACAACTCAAAAACAATCAAGTCATTTCTCGGTTGTTATTATAATGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAACTCAAAAACAATCAAGTCATTTCTCGGTTGTTATTATAATGA  884

seq1  ACTCTTACTCCTAGTGTCTAGAGTTCTATAGATTTCCTTGGCTTACTTGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACTCCTAGTGTCTAGAGTTCTATAGATTTCCTTGGCTTACTTGT  934

seq1  CCTTTCCTACATGGAACTCTTACAGGCATTAAGCTCACATTATTAGATCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTACATGGAACTCTTACAGGCATTAAGCTCACATTATTAGATCT  984

seq1  GCAAGTAAGGTGTTCCAATCACCATGTTTCAATATCCTATTCACTGGACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAAGGTGTTCCAATCACCATGTTTCAATATCCTATTCACTGGACT  1034

seq1  ATTTGGTTTCCAGGAACTACCTTCTCTTAAATCATCCATCTTCTTTCTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTCCAGGAACTACCTTCTCTTAAATCATCCATCTTCTTTCTTT  1084

seq1  CTCAGAGAAATGAAGTTGTTCTTTTTCTTTTAAAATACATGAGGCCTCAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAATGAAGTTGTTCTTTTTCTTTTAAAATACATGAGGCCTCAA  1134

seq1  CCTTCTCCCAAATCATGGATGGCCATTATCAGAATTCCCTCCATGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCCAAATCATGGATGGCCATTATCAGAATTCCCTCCATGAATTC  1184


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