BAC Information

Click to search

BAC

Clone NameB6Ng01-213B04
Chromosome11 (Build37)
Map Location 102,854,661 - 102,989,795
singlet/doubletdoublet
Overlap geneDcakd, Nmt1, Plcd3, Acbd4, Hexim1
Upstream geneMpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
Downstream geneHexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213B04.bB6Ng01-213B04.g
ACCGA030705GA030706
length677988
definitionB6Ng01-213B04.b B6Ng01-213B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,989,121 - 102,989,795)(102,854,661 - 102,855,638)
sequence
gaattcactgtgtagaccaaactggctgtgaaatcaataagtagccaaag
ctagggttagatgtgatccatcatatgcttttttctctgatcagattgtt
tgaatgctattaggcttagtgaccattttctagaactaaaaggaagatgt
tccttccagtcccaaatttgataatctgcttttgcctgaaagttgcattg
gcattatctgggtatgcagaattccatgtttaaagcagcccccaggactg
gagagatggctcagtggtaaagagggcaaagtgttattttagggggcctg
agttcaagtcccagcacccacactggggggctcacagctgctatctctcc
acctctagggaatccaacatggcctctaagagtgcttgtacatgctcaca
caccctgaggcacagacatacccagacacatgattaaaaaataaaatctt
aaggtaggcttgtttggttggtttggttttgggttgttgttagttttgtt
caagacagggtctcactatgtatgtagaccaggctggcctcaaactcata
gatgtccacctgactgcctggactaaaagcgctctccatcatacatgatg
tttgaatacctgcttgcaattttttaagaaaaggcctcactatttagctc
tgactggcatggaactcacagatactt
gaattccaaggttttgcaaaggtttttactgtcctcaacttatcatgcag
aaaccaaaggtaaggagacagagctggaccccagacctgggtctctggct
cctcctgagaggggactcaaagtctgcagttccgagtctgcactctccta
accaaatcccttggtggtctgctgtacacgcagtgtcccgcactccacag
gattccaggatgggtctctcagttacagggcaccgctggggttcacaact
ctgctctgccaggtttctgctcgaccccacccacccgagggagcaggcca
ctgtgacactctgtgagtgacagctcttcactgaccgtcccagccctttt
ttgttgcttggaaatgtgcggggagctaatgagctgctctccgaggctta
ggcagctctgtgaaaggggcattaagaatggccactgctgccttcacatt
agtcacactcatttttggccttaataggctgctgcgaacaagatctacac
atcagcaggtctgtagacgccggccgggaaggctgatgtctgcaccggtc
taattgggttggggaagaaaaaaagcagacctgtggcgagtgtatgtgat
ctccccacggctccaccgacttcccagaggtgcacaggtctgactagagt
cctatgcttaggccccctcagtgtgaacaaaggccaagtggaattcagtg
gacattttagagcaatttccatttattgagcaccctgtggggcaggctgt
ggtacactagagtggagatgattcggccctgccatctagaggcgtacagt
ctgggagaacccaaccaggttacgcgttattctctcgtggatttggatga
gacaagaaggtgatctctatagcacctaactcagtctggggctgctggag
ctgacctggggcagccaggggttagatactgcatggcaggaacatgtggg
gaaggctcagagttagaaagcttggggtcttgggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102989121_102989795
seq2: B6Ng01-213B04.b_45_721 (reverse)

seq1  AAGTATCTGTGAGTTCCATGCCAGTCAGAGCTAAATAGTGAGGCCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTGTGAGTTCCATGCCAGTCAGAGCTAAATAGTGAGGCCTTTTC  50

seq1  TT-AAAAACTGC-AGCAGGTATTCAAACATCATGTATGATGGAGAGCGCT  98
      || ||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATTGCAAGCAGGTATTCAAACATCATGTATGATGGAGAGCGCT  100

seq1  TTTAGTCCAGGCAGTCAGGTGGACATCTATGAGTTTGAGGCCAGCCTGGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCCAGGCAGTCAGGTGGACATCTATGAGTTTGAGGCCAGCCTGGT  150

seq1  CTACATACATAGTGAGACCCTGTCTTGAACAAAACTAACAACAACCCAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACATAGTGAGACCCTGTCTTGAACAAAACTAACAACAACCCAAA  200

seq1  ACCAAACCAACCAAACAAGCCTACCTTAAGATTTTATTTTTTAATCATGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAACCAAACAAGCCTACCTTAAGATTTTATTTTTTAATCATGT  250

seq1  GTCTGGGTATGTCTGTGCCTCAGGGTGTGTGAGCATGTACAAGCACTCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTATGTCTGTGCCTCAGGGTGTGTGAGCATGTACAAGCACTCTT  300

seq1  AGAGGCCATGTTGGATTCCCTAGAGGTGGAGAGATAGCAGCTGTGAGCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATGTTGGATTCCCTAGAGGTGGAGAGATAGCAGCTGTGAGCCC  350

seq1  CCCAGTGTGGGTGCTGGGACTTGAACTCAGGCCCCCTAAAATAACACTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGGGTGCTGGGACTTGAACTCAGGCCCCCTAAAATAACACTTT  400

seq1  GCCCTCTTTACCACTGAGCCATCTCTCCAGTCCTGGGGGCTGCTTTAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTTACCACTGAGCCATCTCTCCAGTCCTGGGGGCTGCTTTAAAC  450

seq1  ATGGAATTCTGCATACCCAGATAATGCCAATGCAACTTTCAGGCAAAAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTCTGCATACCCAGATAATGCCAATGCAACTTTCAGGCAAAAGC  500

seq1  AGATTATCAAATTTGGGACTGGAAGGAACATCTTCCTTTTAGTTCTAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCAAATTTGGGACTGGAAGGAACATCTTCCTTTTAGTTCTAGAA  550

seq1  AATGGTCACTAAGCCTAATAGCATTCAAACAATCTGATCAGAGAAAAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCACTAAGCCTAATAGCATTCAAACAATCTGATCAGAGAAAAAAG  600

seq1  CATATGATGGATCACATCTAACCCTAGCTTTGGCTACTTATTGATTTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATGGATCACATCTAACCCTAGCTTTGGCTACTTATTGATTTCAC  650

seq1  AGCCAGTTTGGTCTACACAGTGAATTC  675
      |||||||||||||||||||||||||||
seq2  AGCCAGTTTGGTCTACACAGTGAATTC  677

seq1: chr11_102854661_102855638
seq2: B6Ng01-213B04.g_72_1048

seq1  GAATTCCAAGGTTTTGCAAAGGTTTTTACTGTCCTCAACTTATCATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTTTTGCAAAGGTTTTTACTGTCCTCAACTTATCATGCAG  50

seq1  AAACCAAAGGTAAGGAGACAGAGCTGGACCCCAGACCTGGGTCTCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGGTAAGGAGACAGAGCTGGACCCCAGACCTGGGTCTCTGGCT  100

seq1  CCTCCTGAGAGGGGACTCAAAGTCTGCAGTTCCGAGTCTGCACTCTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGAGGGGACTCAAAGTCTGCAGTTCCGAGTCTGCACTCTCCTA  150

seq1  ACCAAATCCCTTGGTGGTCTGCTGTACACGCAGTGTCCCGCACTCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCCCTTGGTGGTCTGCTGTACACGCAGTGTCCCGCACTCCACAG  200

seq1  GATTCCAGGATGGGTCTCTCAGTTACAGGGCACCGCTGGGGTTCACAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGGATGGGTCTCTCAGTTACAGGGCACCGCTGGGGTTCACAACT  250

seq1  CTGCTCTGCCAGGTTTCTGCTCGACCCCACCCACCCGAGGGAGCAGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCCAGGTTTCTGCTCGACCCCACCCACCCGAGGGAGCAGGCCA  300

seq1  CTGTGACACTCTGTGAGTGACAGCTCTTCACTGACCGTCCCAGCCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACACTCTGTGAGTGACAGCTCTTCACTGACCGTCCCAGCCCTTTT  350

seq1  TTGTTGCTTGGAAATGTGCGGGGAGCTAATGAGCTGCTCTCCGAGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTTGGAAATGTGCGGGGAGCTAATGAGCTGCTCTCCGAGGCTTA  400

seq1  GGCAGCTCTGTGAAAGGGGCATTAAGAATGGCCACTGCTGCCTTCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCTGTGAAAGGGGCATTAAGAATGGCCACTGCTGCCTTCACATT  450

seq1  AGTCACACTCATTTTTGGCCTTAATAGGCTGCTGCGAACAAGATCTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACTCATTTTTGGCCTTAATAGGCTGCTGCGAACAAGATCTACAC  500

seq1  ATCAGCAGGTCTGTAGACGCCGGCCGGGAAGGCTGATGTCTGCACCGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGGTCTGTAGACGCCGGCCGGGAAGGCTGATGTCTGCACCGGTC  550

seq1  TAATTGGGTTGGGGAAGAAAAAAAGCAGACCTGTGGCGAGTGTATGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGGTTGGGGAAGAAAAAAAGCAGACCTGTGGCGAGTGTATGTGAT  600

seq1  CTCCCCACGGCTCCACCGACTTCCCAGAGGTGCACAGGTCTGACTAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACGGCTCCACCGACTTCCCAGAGGTGCACAGGTCTGACTAGAGT  650

seq1  CCTATGCTTAGGCCCCCTCAGTGTGAACAAAGGCCAAGTGGAATTCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTTAGGCCCCCTCAGTGTGAACAAAGGCCAAGTGGAATTCAGTG  700

seq1  GACATTTTAGAGCAA-TTCCATTTATTGAGCA-CCTGTGGGGCAGGCTGT  748
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  GACATTTTAGAGCAATTTCCATTTATTGAGCACCCTGTGGGGCAGGCTGT  750

seq1  GGTACACTAGAGTGGAGATGAATCGGCCCTGCCATCTAGAGGCGTACAGT  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTACACTAGAGTGGAGATGATTCGGCCCTGCCATCTAGAGGCGTACAGT  800

seq1  CTGGGAGAACCCAACCAGGTTACGCGTTATTCTCTCGTGGATTTGGATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAACCCAACCAGGTTACGCGTTATTCTCTCGTGGATTTGGATGA  850

seq1  GACAGGAAGGTGATCTCTATAGCACCTAACTCAGTCTGGGGCTGCTGGAG  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAGGTGATCTCTATAGCACCTAACTCAGTCTGGGGCTGCTGGAG  900

seq1  CCTGACCTGGGGCAGCCAGGGGTAAGATACTGCAGGGCAGGGAGCATGTG  948
       |||||||||||||||||||||| |||||||||| |||| ||| ||||||
seq2  -CTGACCTGGGGCAGCCAGGGGTTAGATACTGCATGGCA-GGAACATGTG  948

seq1  GGGAAGGCACAGAGGTAGGAGAGCTTGGGG  978
      |||||||| ||||| || || |||||||||
seq2  GGGAAGGCTCAGAGTTA-GAAAGCTTGGGG  977