BAC Information

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BAC

Clone NameB6Ng01-213G06
Chromosome11 (Build37)
Map Location 41,032,371 - 41,175,983
singlet/doubletdoublet
Overlap geneLOC100039285
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213G06.bB6Ng01-213G06.g
ACCGA030934GA030935
length1,0651,101
definitionB6Ng01-213G06.b B6Ng01-213G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,032,371 - 41,033,288)(41,174,869 - 41,175,983)
sequence
gaattctaggcctttaggcccaggcttgggaatgtggcctttgtaaaggt
atgctaatcaaaaaagagagcaacattcctctacccacccgcttcctggg
ttcaaagagtgctcattcaaagaaagtcaccctggccattaccagaacct
gcaatgcaaatgtgctattgttagaggctcttagaagctgtcttgagagt
taacaattaccaggtattccttgtgactcttgtaactttacacttccttg
tgactcttaactggtatctttggtatcttccaacaacgccctccccactt
ccttaagtttcggtttcttcctttaaatacccccttacccagctactcgg
ggtgccacggtcctctacccctgtgtggtgtatgaccatgggcccgagag
cgctcttgaataaaaatcctcttgcaatttgcagcaagacccgtttcttg
tgggtgattttggggtgtcgcctctcctgagtcagaacgtgggggagccc
tcacattgtgggtctttcatttggtgcgttggccgggaaacgcgaccacc
cctcacacccgagaaccgacttggaggtatggggatcccctcttgcgtgc
gtgtgtgccggccagtgtctctgttttgagtgtctgttttctgaaacgaa
cattggaacatgtgcttgttgtgttgggttgtttgtgtcttgtcctatgt
ttctgaagtacggcgaagtctgagtttggatccgtctgagtttattgaac
ttgtgccttggttttccggttgcgagatcgtgggttcgagtcccacctcg
tgctttggttttacacctggcagagtgagaaacaagtgagattctctggt
tttggttgtctaggtagaagtggacgacggtgtttgtagacgatggggtg
atggggttttctgaaatgcgcgcgtctgtatttgcagctgtcctttttgg
gtcctaaggaccggaaggactgtgttcgcagacgtgctagaagaccacag
gcttgttgcctgggggacgctctgggaggaaggaagagtctaggtacgcc
ttgcctgtctccgga

gaattcctctcgttactggaactatgttctacatctccatgacaatgttt
tctcctgattttataacttcgatggacaccacttcacattagtgaaaaat
tggcaccaacttggactgtgtaggaaatcacatggacaggggcatagtaa
gcctgatttgactatcatcccaaaaggaaaaagagccatgtagttaacta
tttgagcatccaaagattatctgaatctcaaattgtttccaaggactcag
cacctacttcgtaccttatcatcttgttcaaggaccatgacattagcatt
aagacaagaaaaaaagaaaagaattactgaatctgagagttacttctctg
aaacatttagtagtgctttataaacagaaacactacagtgcatcaactcc
aaataaccttcagaacaaaacctaaatcatttccggtttagagggatgta
aaaatatggatatatgatagaatttggtaaatattaatttcccctaattt
aattttcacatgccagaggtacagagtaaagacgttaaaattcagggaac
aaccttatacctgtgtgaattaaccttcatccctgtgagaggttgtgaag
atggcattcacaaacaattctctggaccatacattttaatacatggttga
tttgagctttttcaaagtgaacagaggatctgtttccttgaaatttcact
atatatgtgacttataaatgaaaatcttttctgtttcccaaaagattcgt
gttttctctttaggaagctataaatttcacatgtgcaaggtctagtttat
ggaaatagtgatcaaatactttacctgtgaacaccgattcttctttaaaa
ggcacaacaaaatactaaaaaaaagtatgcagtccattaagaaactgaga
acactgggtatgtttacataataattaatcataagaatcaccattctttg
tctaacaataagtaaaaggcttaatgctacttttattgtttcatagaaag
taatgccatgttttcatattaaactatatgtgtagacttcagacatatca
tgaaaatccctcatcatgacatcttttttgccattgattttcgagaacag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41032371_41033288
seq2: B6Ng01-213G06.b_188_1107

seq1  AACCTGCAATGCAAATGTGCTATTGTTAGAGGCTCTTAGAAGCTGTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAATGCAAATGTGCTATTGTTAGAGGCTCTTAGAAGCTGTCTTG  50

seq1  AGAGTTAACAATTACCAGGTATTCCTTGTGACTCTTGTAACTTTACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAACAATTACCAGGTATTCCTTGTGACTCTTGTAACTTTACACTT  100

seq1  CCTTGTGACTCTTAACTGGTATCTTTGGTATCTTCCAACAACGCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGACTCTTAACTGGTATCTTTGGTATCTTCCAACAACGCCCTCCC  150

seq1  CACTTCCTTAAGTTTCGGTTTCTTCCTTTAAATACCCCCTTACCCAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTAAGTTTCGGTTTCTTCCTTTAAATACCCCCTTACCCAGCTA  200

seq1  CTCGGGGTGCCACGGTCCTCTACCCCTGTGTGGTGTATGACCATGGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGTGCCACGGTCCTCTACCCCTGTGTGGTGTATGACCATGGGCCC  250

seq1  GAGAGCGCTCTTGAATAAAAATCCTCTTGCAATTTGCAGCAAGACCCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCGCTCTTGAATAAAAATCCTCTTGCAATTTGCAGCAAGACCCGTT  300

seq1  TCTTGTGGGTGATTTTGGGGTGTCGCCTCTCCTGAGTCAGAACGTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGGTGATTTTGGGGTGTCGCCTCTCCTGAGTCAGAACGTGGGGG  350

seq1  AGCCCTCACATTGTGGGTCTTTCATTTGGTGCGTTGGCCGGGAAACGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCACATTGTGGGTCTTTCATTTGGTGCGTTGGCCGGGAAACGCGA  400

seq1  CCACCCCTCACACCCGAGAACCGACTTGGAGGTATGGGGATCCCCTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTCACACCCGAGAACCGACTTGGAGGTATGGGGATCCCCTCTTG  450

seq1  CGTGCGTGTGTGCCGGCCAGTGTCTCTGTTTTGAGTGTCTGTTTTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGTGTGTGCCGGCCAGTGTCTCTGTTTTGAGTGTCTGTTTTCTGAA  500

seq1  ACGAACATTGGAACATGTGCTTGTTGTGTTGGGTTGTTTGTGTCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACATTGGAACATGTGCTTGTTGTGTTGGGTTGTTTGTGTCTTGTCC  550

seq1  TATGTTTCTGAAGTACGGCGAAGTCTGAGTTTGGATCCGTCTGAGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTGAAGTACGGCGAAGTCTGAGTTTGGATCCGTCTGAGTTTAT  600

seq1  TGAACTTGTGCCTTGGTTTTCCGGTTGCGAGATCGTGGGTTCGAGTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGTGCCTTGGTTTTCCGGTTGCGAGATCGTGGGTTCGAGTCCCA  650

seq1  CCTCGTGCTTTGGTTTTACACCTGGCAGAGTGAGAAACAAGTGAGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGCTTTGGTTTTACACCTGGCAGAGTGAGAAACAAGTGAGATTCT  700

seq1  CTGGTTTTGGTTGTCTAGGTAGAAGTGGACGACGGTGTTTGTAGACGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGGTTGTCTAGGTAGAAGTGGACGACGGTGTTTGTAGACGATG  750

seq1  GGGTGATGGGGTTTTCTGAAATGCGCGCGTCTGTATTTGCAGCTGTCC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGTGATGGGGTTTTCTGAAATGCGCGCGTCTGTATTTGCAGCTGTCCTT  800

seq1  TTTGGGCCGTAAGGACCGG-AGGACTGTGGTCGGCAGACGTGCTAAGAGG  848
      |||||| | |||||||||| ||||||||| || ||||||||||| ||| |
seq2  TTTGGGTCCTAAGGACCGGAAGGACTGTGTTC-GCAGACGTGCT-AGAAG  848

seq1  ACCACAGGC-TGTGGCCCTGGGGGACGCCCTGGGAGGTAGGGAGAGTC-A  896
      ||||||||| ||| | |||||||||||| |||||||| ||| |||||| |
seq2  ACCACAGGCTTGTTG-CCTGGGGGACGCTCTGGGAGGAAGGAAGAGTCTA  897

seq1  GGGACGCC-TGGCTGTCTCCGGA  918
      || ||||| || |||||||||||
seq2  GGTACGCCTTGCCTGTCTCCGGA  920


seq1: chr11_41174869_41175983
seq2: B6Ng01-213G06.g_66_1166 (reverse)

seq1  CCTG-TCTCGAAAAACCAAAGGGGCAAAAAAAGGATGTTCATGATGAGGG  49
      |||| ||||||||| |   |  |||||||||  |||| ||||||||| ||
seq2  CCTGTTCTCGAAAATC---AATGGCAAAAAA--GATG-TCATGATGA-GG  43

seq1  GATTTTTCAATGATATTTGTTCCTGAAGTCTACACATATAGTTTATATTG  99
      ||||||   ||||||| |    ||||||||||||||||||||||| ||  
seq2  GATTTT--CATGATATGT----CTGAAGTCTACACATATAGTTTA-ATAT  86

seq1  AAAAACATGGCATTACTTTTCTTATGAAAC-ATAAAAGTAGCATTAAGCC  148
       ||||||||||||||||||   |||||||| |||||||||||||||||||
seq2  GAAAACATGGCATTACTTT--CTATGAAACAATAAAAGTAGCATTAAGCC  134

seq1  TTTTACTTATTGTTAGACAAAGAATGGTGATTTCTTATGATTAATTATTA  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTACTTATTGTTAGACAAAGAATGGTGA-TTCTTATGATTAATTATTA  183

seq1  TGTAAACATA-CCAGTGTTCTCAGTTTCTTAATGGACTGCATACTTTTTT  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACATACCCAGTGTTCTCAGTTTCTTAATGGACTGCATACTTTTTT  233

seq1  TTAGTATTTTGTTGTGCCTTTTAAAGAAGAATCGGTGTTCACAGGTAAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTTGTTGTGCCTTTTAAAGAAGAATCGGTGTTCACAGGTAAAG  283

seq1  TATTTGATCACTATTTCCATAAACTAGACCTTGCACATGTGAAATTTATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCACTATTTCCATAAACTAGACCTTGCACATGTGAAATTTATA  333

seq1  GCTTCCTAAAGAGAAAACACGAATCTTTTGGGAAACAGAAAAGATTTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAAAGAGAAAACACGAATCTTTTGGGAAACAGAAAAGATTTTCA  383

seq1  TTTATAAGTCACATATATAGTGAAATTTCAAGGAAACAGATCCTCTGTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTCACATATATAGTGAAATTTCAAGGAAACAGATCCTCTGTTC  433

seq1  ACTTTGAAAAAGCTCAAATCAACCATGTATTAAAATGTATGGTCCAGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAAAGCTCAAATCAACCATGTATTAAAATGTATGGTCCAGAGA  483

seq1  ATTGTTTGTGAATGCCATCTTCACAACCTCTCACAGGGATGAAGGTTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTGAATGCCATCTTCACAACCTCTCACAGGGATGAAGGTTAAT  533

seq1  TCACACAGGTATAAGGTTGTTCCCTGAATTTTAACGTCTTTACTCTGTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGGTATAAGGTTGTTCCCTGAATTTTAACGTCTTTACTCTGTAC  583

seq1  CTCTGGCATGTGAAAATTAAATTAGGGGAAATTAATATTTACCAAATTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCATGTGAAAATTAAATTAGGGGAAATTAATATTTACCAAATTCT  633

seq1  ATCATATATCCATATTTTTACATCCCTCTAAACCGGAAATGATTTAGGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATCCATATTTTTACATCCCTCTAAACCGGAAATGATTTAGGTT  683

seq1  TTGTTCTGAAGGTTATTTGGAGTTGATGCACTGTAGTGTTTCTGTTTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAAGGTTATTTGGAGTTGATGCACTGTAGTGTTTCTGTTTATA  733

seq1  AAGCACTACTAAATGTTTCAGAGAAGTAACTCTCAGATTCAGTAATTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTACTAAATGTTTCAGAGAAGTAACTCTCAGATTCAGTAATTCTT  783

seq1  TTCTTTTTTTCTTGTCTTAATGCTAATGTCATGGTCCTTGAACAAGATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTCTTGTCTTAATGCTAATGTCATGGTCCTTGAACAAGATGA  833

seq1  TAAGGTACGAAGTAGGTGCTGAGTCCTTGGAAACAATTTGAGATTCAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACGAAGTAGGTGCTGAGTCCTTGGAAACAATTTGAGATTCAGAT  883

seq1  AATCTTTGGATGCTCAAATAGTTAACTACATGGCTCTTTTTCCTTTTGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGGATGCTCAAATAGTTAACTACATGGCTCTTTTTCCTTTTGGG  933

seq1  ATGATAGTCAAATCAGGCTTACTATGCCCCTGTCCATGTGATTTCCTACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTCAAATCAGGCTTACTATGCCCCTGTCCATGTGATTTCCTACA  983

seq1  CAGTCCAAGTTGGTGCCAATTTTTCACTAATGTGAAGTGGTGTCCATCGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGTTGGTGCCAATTTTTCACTAATGTGAAGTGGTGTCCATCGA  1033

seq1  AGTTATAAAATCAGGAGAAAACATTGTCATGGAGATGTAGAACATAGTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAAATCAGGAGAAAACATTGTCATGGAGATGTAGAACATAGTTC  1083

seq1  CAGTAACGAGAGGAATTC  1115
      ||||||||||||||||||
seq2  CAGTAACGAGAGGAATTC  1101


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