BAC Information

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BAC

Clone NameB6Ng01-214K07
Chromosome11 (Build37)
Map Location 57,945,466 - 57,945,896
singlet/doubletsinglet
Overlap geneGemin5
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8
Downstream geneMrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214K07.bB6Ng01-214K07.g
ACCGA031839GA031840
length596331
definitionB6Ng01-214K07.b B6Ng01-214K07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgctctctttgttttagaaaaattcttactatgtaacccagg
ctagcctggaattcccagtatatcccaggctggctttaaacaaatgacag
ttcttctactccagtctctaacatgttgagattatagccataagccaccg
tgcccatctaaaatgttttagatattatcttcttaaaaaaattataatgc
cagacagtggtagcatacacctttaatcccagaacttgggagacagaggc
agacagatgtttgtgagttcaagaacagcctggtctgcagagtaactttc
aggatatccagggctacacagagaaaccctgtctcaaaaacatttttata
tgatttactttattcctgtgctcatctggaggtcagaggaaaactaatgg
agttggttcttccttccactacgtgggtcctgggatcaaattcaagttgt
caggcctagcagcaagcactttcccctacctagccatctcgccaaacctg
aatgctaacttttaactgtttttgtttgtttgtttgttttgttttttgtt
tgtttgttttgtttttttcggaggagggaggtggggtggcacacat
agacatgcccttagtacacacctttaatcctaaacaatgaaggtaaagtt
agtttgtggaaggcagtgcccatgtttgaaagtgatgcctaattgaatag
cagaccaagtgacaaatcagagaaagatttgacagaataggatacaccca
actctcaggagaacagacaggaaagagagcctacttaagagagaagtgca
gaaaagaaaaaggggagagagaggggaggagaagagagagggggtggggg
agagtcaggcgtttctcttatacaggttattgataaaacaagccaaatac
atatgaagactgtacaagtctgtgtttacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57945466_57945896
seq2: B6Ng01-214K07.b_83_385 (reverse)

seq1  TTTTTGAGACAGGGTTTCTCTGTGTAACCCT-------------------  31
      |||||||||||||||||||||||||| ||||                   
seq2  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGATATCCTGAAAGTTACT  50

seq1  ----------GGCTGTCCTCAAACTCAGAA--ATCCACCTGCCTCTGCCT  69
                |||||| ||  |||||| ||  |||   ||||||||| ||
seq2  CTGCAGACCAGGCTGTTCTTGAACTCACAAACATCTGTCTGCCTCTGTCT  100

seq1  CCCAAGTGCTGGGATTAAAGGCGGGAGCCACCACTGCCCGGCTCAGTATG  119
      ||||||| ||||||||||||| |   || ||||||| | |||     || 
seq2  CCCAAGTTCTGGGATTAAAGGTGTATGCTACCACTGTCTGGC-----AT-  144

seq1  GACTTCTGAAGTAAGGGAAGGGTGTACAATCCCAGTATTCCAGAAGACAA  169
                              || |||     | ||  |||||| ||
seq2  ------------------------TATAAT----TTTTTTAAGAAGATAA  166

seq1  CATGACCACAGATCTGAGGCTAGCACTGTTAGACTTTTTCTCCAGAAAGA  219
       ||                |||        | || ||||    || | | 
seq2  TAT----------------CTA--------AAACATTTT----AG-ATGG  187

seq1  TCAAGGTGAACCACAACAAAGCCAGACAAGATAAACAAAAGGACCAGCTC  269
       || ||||                     | | |            ||| 
seq2  GCACGGTG---------------------GCTTA----------TGGCT-  205

seq1  ACATGATCACACTACTGAGAATCTGTGACAGGGAAAGGCCCAACTAGAGA  319
        || ||| ||                ||| |            ||||||
seq2  --ATAATCTCA----------------ACATG-----------TTAGAGA  226

seq1  AAAACCCATGTTCTCATGCAGTACAGACAAAAAGACACCTGGCATGGAGT  369
                      || |||| |         | | ||| |||    |
seq2  ---------------CTGGAGTAGA---------AGAACTGTCAT---TT  249

seq1  GTGTACCTGCAATTTATGCACCGGGAGA-ACTAAGGAGTTTCAGGGCTAG  418
      || ||    ||      || | |||| | |||  ||| || || ||||||
seq2  GTTTAAAGCCA------GC-CTGGGATATACT-GGGAATTCCA-GGCTAG  290

seq1  CCTGGGTTACATA  431
      |||||||||||||
seq2  CCTGGGTTACATA  303