BAC Information

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BAC

Clone NameB6Ng01-215B19
Chromosome11 (Build37)
Map Location 68,543,888 - 68,653,883
singlet/doubletdoublet
Overlap geneMyh10, Ndel1
Upstream geneGlp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215B19.bB6Ng01-215B19.g
ACCGA032174GA032175
length1,1321,177
definitionB6Ng01-215B19.b B6Ng01-215B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,543,888 - 68,544,980)(68,652,718 - 68,653,883)
sequence
gaattcctctgtgttctgctttgttaagcagttcttttttttttttctct
ctctctctctttaacatcacgaatggatttttttcccaaatattttttct
acatctattcggtgatgacgtgatttttcttgatgttttaacaagcgcat
tagagtgagcacaagcacacgtgcctgttacacgacttgttgtacagatt
cctgggcacacttgctcttgctttgttaagaatgtcttgtgtgttcattg
atgagatacatgctttctgttacatttccttccaggcttagcatctggct
gaagtaagccttgtctcttagagtagactgggaactgtttctccctcttt
attttctgaagactgtagaaagttggttttgtatggtttgcttttttttt
ttttttttttttttaagtaagccccccacccccaaactctgttttccact
gtgatactttctgttctttattgtttcctctcttggggtttcatttgctc
tttcctaggcttttatgatgggggctgcgattgttgatttgaacattgcc
gctgctgggcctgtggcttatgtcagctatactgagtgtctcctcctgtg
gtttttggaaggcactgtggaaaacactgggctggctgtgctagcacacg
tgtctcctcattagacagttgattggatttttttaactgagtttcttttc
attataattgtcactgtctagatacatttatgggtttttggagttggagc
gtcctttgtgcactgtcattggtgccctctcttgggcagtttaggaaaag
gaggagtcggtgaaactgaacccagaggtcgggattgagaggacggtgtc
ataagacttggaagggttcttggaaatcttcaggcccgttccttctaggt
gctattaagagaagactggagagaaaacttcttagagcagtacaaaggtc
agaaaaagaagagcaagtgtcatgtagtcttgggaggaagagccttttcg
ttgttagttgcctgtcagggagggatgggatgtccgtattggggaaggga
gaggtctctctccttcagaacagtgctgggttattaccgtatccagggaa
atccagcgctttttttggacccgttaaggaga
gaattcaattcgcagcacccacatagtggctcacagccgtctgtgatggg
gtctgatgccctgataggtgtgtccaaagactgctacatgtactcatatc
cataaaatcaatcagtcttaaaaaaagattggaattggtattctgagttg
taattttaggttggagaattttgtatttgtagcagataccagggaatggg
agcccacaagagtaggtccgtgttaatttttgctgactgaagtgaagtca
ttctccaaattgggtcaggctgactgggttaagaatggcaggagataaac
tgattgctttcttttgtactagctgtttgaacatgctgtttaattcatgg
gcttcaaataatttttttttaaagggcaacaatagtttcactggaagact
ttgaacaaaggctaaatcaggccattgaacgaaatgcattcttagaaagt
gagctcgatgaaaaggaatctttgttggtctcagtacagaggttaaagga
tgaagccagaggtaagctctatcacttagccagtgtttacccattgcctg
tgcctgagtaagcacaaggactgactaacccctctgatggtgctaggggt
caccccggagcttgagcaattgggtaagcactctgctcctgagctgtgtt
ccagccctcagtttctcggaagctctagttctatatgcttttacatagct
ttcaatcgttgtgccaagtgcttttaacctggtcaattatctcataccca
tagcatcagtgctgaggagtaggtagaacctccatgttataggtgaacag
aaaggaggcacagagagttggagctttttcactgttgtactgctctcagt
tgggattttttcttccttattaattgtatttaaataactcgttattttac
atagaaccatatatatatatatatatatatatgtgtatatataatgttgc
tgtttacatattattcatgtaactcgaacaccactttccttttaaacttc
ctttcctcctcagaaacaataaaaattgagaatattaataaagaagttcc
ccttaacagtgtgacataagttaccttttttatggatgcatatgtctggt
atattgcctcaataattccggacttcctatgacgaaacagaaattgaaca
catacagttacttttttttcaacttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68543888_68544980
seq2: B6Ng01-215B19.b_47_1178

seq1  GAATTCCTCTGTGTTCTGCTTTGTTAAGCAGTTCTTTTTTTTTTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTGTTCTGCTTTGTTAAGCAGTTCTTTTTTTTTTTTCTCT  50

seq1  CTCTCTCTCTTTAACATCACGAATGGATTTTTTTCCCAAATATTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTAACATCACGAATGGATTTTTTTCCCAAATATTTTTTCT  100

seq1  ACATCTATTCGGTGATGACGTGATTTTTCTTGATGTTTTAACAAGCGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATTCGGTGATGACGTGATTTTTCTTGATGTTTTAACAAGCGCAT  150

seq1  TAGAGTGAGCACAAGCACACGTGCCTGTTACACGACTTGTTGTACAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAGCACAAGCACACGTGCCTGTTACACGACTTGTTGTACAGATT  200

seq1  CCTGGGCACACTTGCTCTTGCTTTGTTAAGAATGTCTTGTGTGTTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCACACTTGCTCTTGCTTTGTTAAGAATGTCTTGTGTGTTCATTG  250

seq1  ATGAGATACATGCTTTCTGTTACATTTCCTTCCAGGCTTAGCATCTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATACATGCTTTCTGTTACATTTCCTTCCAGGCTTAGCATCTGGCT  300

seq1  GAAGTAAGCCTTGTCTCTTAGAGTAGACTGGGAACTGTTTCTCCCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGCCTTGTCTCTTAGAGTAGACTGGGAACTGTTTCTCCCTCTTT  350

seq1  ATTTTCTGAAGACTGTAGAAAGTTGGTTTTGTATGGTTTGCTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAAGACTGTAGAAAGTTGGTTTTGTATGGTTTGCTTTTTTTTT  400

seq1  TTTTTTTTTTTTTTAAGTAAGCCCCCCACCCCCAAACTCTGTTTTCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAGTAAGCCCCCCACCCCCAAACTCTGTTTTCCACT  450

seq1  GTGATACTTTCTGTTCTTTATTGTTTCCTCTCTTGGGGTTTCATTTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTTTCTGTTCTTTATTGTTTCCTCTCTTGGGGTTTCATTTGCTC  500

seq1  TTTCCTAGGCTTTTATGATGGGGGCTGCGATTGTTGATTTGAACATTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGGCTTTTATGATGGGGGCTGCGATTGTTGATTTGAACATTGCC  550

seq1  GCTGCTGGGCCTGTGGCTTATGTCAGCTATACTGAGTGTCTCCTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGCCTGTGGCTTATGTCAGCTATACTGAGTGTCTCCTCCTGTG  600

seq1  GTTTTTGGAAGGCACTGTGGAAAACACTGGGCTGGCTGTGCTAGCACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGAAGGCACTGTGGAAAACACTGGGCTGGCTGTGCTAGCACACG  650

seq1  TGTCTCCTCATTAGACAGTTGATTGGATTTTTTTAACTGAGTTTCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCATTAGACAGTTGATTGGATTTTTTTAACTGAGTTTCTTTTC  700

seq1  ATTATAATTGTCACTGTCTAGATACATTTATGGGTTTTTGGAGTTGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTGTCACTGTCTAGATACATTTATGGGTTTTTGGAGTTGGAGC  750

seq1  GTCC-TTGTGCACTGTCA-TGGTG-CCTCTCTT-GGCAGTTTAGG-AAAG  795
      |||| ||||||||||||| ||||| |||||||| ||||||||||| ||||
seq2  GTCCTTTGTGCACTGTCATTGGTGCCCTCTCTTGGGCAGTTTAGGAAAAG  800

seq1  GAGGAGTCGGTGAAACTGAACCCAGAGGTCGGGATTGAGAGGACGGTGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCGGTGAAACTGAACCCAGAGGTCGGGATTGAGAGGACGGTGTC  850

seq1  AT-AGACTTGGAAGGG-TCTTGGAGATC-TCAGGCCCGTTCC-TCTAGGT  891
      || ||||||||||||| ||||||| ||| ||||||||||||| |||||||
seq2  ATAAGACTTGGAAGGGTTCTTGGAAATCTTCAGGCCCGTTCCTTCTAGGT  900

seq1  GCTATT-AGAG-AGACT-GAGAG-AAACT--CTAGAGCAGTAC-AAGGTC  934
      |||||| |||| ||||| ||||| |||||   ||||||||||| ||||||
seq2  GCTATTAAGAGAAGACTGGAGAGAAAACTTCTTAGAGCAGTACAAAGGTC  950

seq1  AGAGA---GAGAGC-AGTG-CATG-AGTC-TGGGAGGAAGAGCC--TTCG  975
      ||| |    ||||| |||| |||| |||| ||||||||||||||  ||||
seq2  AGAAAAAGAAGAGCAAGTGTCATGTAGTCTTGGGAGGAAGAGCCTTTTCG  1000

seq1  TTGTTAGT--GCTG-CAGG--AGGAT-GGATGTCCGTA-TGGGGAAGGGA  1018
      ||||||||   ||| ||||   |||| ||||||||||| |||||||||||
seq2  TTGTTAGTTGCCTGTCAGGGAGGGATGGGATGTCCGTATTGGGGAAGGGA  1050

seq1  GAGGTC-GTC-ACTTCAG-ACAGTGCTGGG-TATTACAG-ATCCAGGGAG  1063
      ||||||  ||  |||||| ||||||||||| |||||| | ||||||||| 
seq2  GAGGTCTCTCTCCTTCAGAACAGTGCTGGGTTATTACCGTATCCAGGGAA  1100

seq1  ATCCAGCGC-TTTTATGGACGCGTT-AGGAGA  1093
      ||||||||| |||| ||||| |||| ||||||
seq2  ATCCAGCGCTTTTTTTGGACCCGTTAAGGAGA  1132

seq1: chr11_68652718_68653883
seq2: B6Ng01-215B19.g_68_1244 (reverse)

seq1  TTAAGTAGAAAAAAAAGAGAAATGTATGTG-TCCATTTCTGTCTGCTCAT  49
      |||||| ||||||||||  || |||||||| || |||||||| |  ||||
seq2  TTAAGTTGAAAAAAAAG-TAACTGTATGTGTTCAATTTCTGTTTCGTCAT  49

seq1  AGGAAAGTCAGGAATTATTTAAGGGAAAATATACAGACATATACAATCAT  99
      ||| ||||| ||||||| || ||| || |||  ||||||||| ||  |||
seq2  AGG-AAGTCCGGAATTA-TTGAGGCAATATA-CCAGACATATGCATCCAT  96

seq1  AAAAAA-GTAAACTATGTCACACTGTTA--GGGGACTTCTTTA-TAATAT  145
      |||||| ||||  |||||||||||||||  ||| ||||||||| ||||||
seq2  AAAAAAGGTAACTTATGTCACACTGTTAAGGGGAACTTCTTTATTAATAT  146

seq1  TCTCAA-TTTTATTGTTTCTGAGGAG--AAAGAAGTTTAAAA-GAAAGT-  190
      |||||| |||||||||||||||||||  || ||||||||||| |||||| 
seq2  TCTCAATTTTTATTGTTTCTGAGGAGGAAAGGAAGTTTAAAAGGAAAGTG  196

seq1  GTGTACGAGTTACATGAATAATATGTAAACAGCAACA-TATATATACACA  239
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGTTCGAGTTACATGAATAATATGTAAACAGCAACATTATATATACACA  246

seq1  TATATATATATATATATATATATGGTTCTATGT-AAATAACGAGTTATTT  288
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATATATATATATATATATATATGGTTCTATGTAAAATAACGAGTTATTT  296

seq1  AAATACAATTAATAAGGA--GAAAAATCCCAACTGAGAGCAGTACAACAG  336
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  AAATACAATTAATAAGGAAGAAAAAATCCCAACTGAGAGCAGTACAACAG  346

seq1  TGAAAAAGCTCCAACTCTCTGTGCCTCC-TTCTGTTCACCTATAACATGG  385
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAAAAAGCTCCAACTCTCTGTGCCTCCTTTCTGTTCACCTATAACATGG  396

seq1  AGGTTCTACCTACTCCTCAGCACTGATGCTATGGGTATGAGATAATTGAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTACCTACTCCTCAGCACTGATGCTATGGGTATGAGATAATTGAC  446

seq1  CAGGTTAAAAGCACTTGGCACAACGATTGAAAGCTATGTAAAAGCATATA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAAAAGCACTTGGCACAACGATTGAAAGCTATGTAAAAGCATATA  496

seq1  GAACTAGAGCTTCCGAGAAACTGAGGGCTGGAACACAGCTCAGGAGCAGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGAGCTTCCGAGAAACTGAGGGCTGGAACACAGCTCAGGAGCAGA  546

seq1  GTGCTTACCCAATTGCTCAAGCTCCGGGGTGACCCCTAGCACCATCAGAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACCCAATTGCTCAAGCTCCGGGGTGACCCCTAGCACCATCAGAG  596

seq1  GGGTTAGTCAGTCCTTGTGCTTACTCAGGCACAGGCAATGGGTAAACACT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGTCAGTCCTTGTGCTTACTCAGGCACAGGCAATGGGTAAACACT  646

seq1  GGCTAAGTGATAGAGCTTACCTCTGGCTTCATCCTTTAACCTCTGTACTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTGATAGAGCTTACCTCTGGCTTCATCCTTTAACCTCTGTACTG  696

seq1  AGACCAACAAAGATTCCTTTTCATCGAGCTCACTTTCTAAGAATGCATTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACAAAGATTCCTTTTCATCGAGCTCACTTTCTAAGAATGCATTT  746

seq1  CGTTCAATGGCCTGATTTAGCCTTTGTTCAAAGTCTTCCAGTGAAACTAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAATGGCCTGATTTAGCCTTTGTTCAAAGTCTTCCAGTGAAACTAT  796

seq1  TGTTGCCCTTTAAAAAAAAATTATTTGAAGCCCATGAATTAAACAGCATG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCCTTTAAAAAAAAATTATTTGAAGCCCATGAATTAAACAGCATG  846

seq1  TTCAAACAGCTAGTACAAAAGAAAGCAATCAGTTTATCTCCTGCCATTCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGCTAGTACAAAAGAAAGCAATCAGTTTATCTCCTGCCATTCT  896

seq1  TAACCCAGTCAGCCTGACCCAATTTGGAGAATGACTTCACTTCAGTCAGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGTCAGCCTGACCCAATTTGGAGAATGACTTCACTTCAGTCAGC  946

seq1  AAAAATTAACACGGACCTACTCTTGTGGGCTCCCATTCCCTGGTATCTGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAACACGGACCTACTCTTGTGGGCTCCCATTCCCTGGTATCTGC  996

seq1  TACAAATACAAAATTCTCCAACCTAAAATTACAACTCAGAATACCAATTC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATACAAAATTCTCCAACCTAAAATTACAACTCAGAATACCAATTC  1046

seq1  CAATCTTTTTTTAAGACTGATTGATTTTATGGATATGAGTACATGTAGCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTTTTTAAGACTGATTGATTTTATGGATATGAGTACATGTAGCA  1096

seq1  GTCTTTGGACACACCTATCAGGGCATCAGACCCCATCACAGACGGCTGTG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGACACACCTATCAGGGCATCAGACCCCATCACAGACGGCTGTG  1146

seq1  AGCCACTATGTGGGTGCTGCGAATTGAATTC  1166
      |||||||||||||||||||||||||||||||
seq2  AGCCACTATGTGGGTGCTGCGAATTGAATTC  1177