MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-216D24
Chromosome	11 (Build37)
Map Location	81,538,285 - 81,678,937
singlet/doublet	doublet
Overlap gene	Accn1, 5530401A14Rik
Upstream gene	Myo1d, Tmem98, Spaca3, 1700071K01Rik
Downstream gene	Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3, Rffl
Link	Open Mouse BAC browser

Click to get alignment info.

name	Myo1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338367 MGI:107728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem98 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103743 MGI:1923457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spaca3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75622 MGI:1922872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Accn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	1700071K01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5530401A14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71388 MGI:1918638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ccl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20296 MGI:98259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20306 MGI:99512
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20292 MGI:103576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20293 MGI:108224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20307 MGI:101878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20290 MGI:98258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem132e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270893 MGI:2685490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cct6b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12467 MGI:1329013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66983 MGI:1914233
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lig3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16882 MGI:109152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rffl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67338 MGI:1914588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Myo1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118026910 GeneID:338367 MGI:107728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin ID transcript_id : NM_177390.3

name	Tmem98 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22095006 GeneID:103743 MGI:1923457
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 98 transcript_id : NM_029537.1

name	Spaca3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626053 GeneID:75622 MGI:1922872
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm acrosome associated 3 transcript_id : NM_029367.1

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074519 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_001034013.2

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074520 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_007384.2

name	1700071K01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385139 GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700071K01 gene transcript_id : NM_001033765.2

name	5530401A14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390239 GeneID:71388 MGI:1918638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5530401A14 gene transcript_id : XM_484055.3

name	Ccl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803162 GeneID:20296 MGI:98259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 2 transcript_id : NM_011333.3

name	Ccl7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476054 GeneID:20306 MGI:99512
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 7 transcript_id : NM_013654.2

name	Ccl11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802451 GeneID:20292 MGI:103576
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small chemokine (C-C motif) ligand 11 transcript_id : NM_011330.2

name	Ccl12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226205 GeneID:20293 MGI:108224
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 12 transcript_id : NM_011331.2

name	Ccl8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803310 GeneID:20307 MGI:101878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 8 transcript_id : NM_021443.2

name	Ccl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387472 GeneID:20290 MGI:98258
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 1 transcript_id : NM_011329.2

name	Tmem132e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254490 GeneID:270893 MGI:2685490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 132E transcript_id : NM_023438.2

name	Cct6b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753325 GeneID:12467 MGI:1329013
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chaperonin subunit 6b (zeta) transcript_id : NM_009839.1

name	Ccdc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360645 GeneID:66983 MGI:1914233
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 16 transcript_id : NM_025884.4

name	Lig3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061469 GeneID:16882 MGI:109152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ligase III, DNA, ATP-dependent transcript_id : NM_010716.2

name	Rffl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922699 GeneID:67338 MGI:1914588
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and FYVE like domain containing protein transcript_id : NM_001007465.2

name	Rffl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16975487 GeneID:67338 MGI:1914588
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and FYVE like domain containing protein transcript_id : NM_026097.1

name	Myo1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118026911 GeneID:338367 MGI:107728
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : molecular motor product : myosin ID protein_id : NP_796364.2

name	Tmem98 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22095007 CCDS:CCDS25135.1 GeneID:103743 MGI:1923457
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC103743 protein_id : NP_083813.1

name	Spaca3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626054 CCDS:CCDS25136.1 GeneID:75622 MGI:1922872
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0003796 - lysozyme activity [Evidence IEA] GO_process : GO:0016998 - cell wall catabolism [Evidence IEA]; GO:0035036 - sperm-egg recognition [Evidence IMP] codon_start : 1 note : acrosomal sperm protein; sperm lysozyme-like protein 1 precusor; sperm c-type lysozyme-like protein product : lysozyme-like protein 3 protein_id : NP_083643.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77404288 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform b protein_id : NP_001029185.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680622 CCDS:CCDS25137.1 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform a protein_id : NP_031410.1

name	1700071K01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702063 GeneID:237880 MGI:3588264
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC237880 protein_id : NP_001028937.1

name	5530401A14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51828598 GeneID:71388 MGI:1918638
definition	codon_start : 1 product : hypothetical protein LOC71388 protein_id : XP_484055.1

name	Ccl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755430 CCDS:CCDS25139.1 GeneID:20296 MGI:98259
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0001664 - G-protein-coupled receptor binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A2; monocyte chemotactic protein; monocyte chemoattractant protein-1 product : chemokine (C-C motif) ligand 2 protein_id : NP_035463.1

name	Ccl7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305463 GeneID:20306 MGI:99512
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A7; RANTES/sis homolog product : chemokine (C-C motif) ligand 7 protein_id : NP_038682.1

name	Ccl11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755418 GeneID:20292 MGI:103576
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A11 product : small chemokine (C-C motif) ligand 11 protein_id : NP_035460.1

name	Ccl12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226206 GeneID:20293 MGI:108224
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : putative; small inducible cytokine A12 (MGD\|MGI:108224) product : chemokine (C-C motif) ligand 12 protein_id : NP_035461.2

name	Ccl8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946818 GeneID:20307 MGI:101878
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A8; monocyte chemoattractant protein-2 product : chemokine (C-C motif) ligand 8 protein_id : NP_067418.1

name	Ccl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755424 GeneID:20290 MGI:98258
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A1; CCR8 ligand product : chemokine (C-C motif) ligand 1 protein_id : NP_035459.1

name	Tmem132e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254491 CCDS:CCDS25144.1 GeneID:270893 MGI:2685490
definition	codon_start : 1 product : transmembrane protein 132E protein_id : NP_075927.2

name	Cct6b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753326 CCDS:CCDS25145.1 GeneID:12467 MGI:1329013
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation function : a testis-specific subunit of the chaperonin containing TCP-1 (CCT); CCT is a molecular chaperone which assists the folding of proteins in eukaryotic cytosol product : chaperonin subunit 6b (zeta) protein_id : NP_033969.1

name	Ccdc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560213 CCDS:CCDS25146.1 GeneID:66983 MGI:1914233
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_process : GO:0001832 - blastocyst growth [Evidence IMP]; GO:0007049 - cell cycle [Evidence IMP]; GO:0051301 - cell division [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 product : coiled-coil domain containing 16 protein_id : NP_080160.2

name	Lig3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061470 CCDS:CCDS25147.1 GeneID:16882 MGI:109152
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : ligase III, DNA, ATP-dependent protein_id : NP_034846.2

name	Rffl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16975488 CCDS:CCDS25149.1 GeneID:67338 MGI:1914588
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; fring; rififylin product : fring isoform 2 protein_id : NP_080373.1

name	Rffl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925636 CCDS:CCDS25148.1 GeneID:67338 MGI:1914588
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; fring; rififylin product : fring isoform 1 protein_id : NP_001007466.1

clone name	MSMg01-415P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165L08
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-216D24.b	B6Ng01-216D24.g
ACC	GA032989	GA032990
length	1,174	856
definition	B6Ng01-216D24.b	B6Ng01-216D24.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(81,538,285 - 81,539,453)	(81,678,084 - 81,678,937)
sequence	gaattcaagtgtaacttacactgttacatttttatttgctaaatcaaaag tctagagtcagtaacgattcctaccatgtttctttgagcttgacccccct aactttgatgatggcttccttgctctaagatgagatcttgccaatggaac accctgtctctgttttcctgtaattaaacaatgcgatctcttagtatctc acacagccccccccccctctctctctctctccccattctattggccttca gttcctctttctttccacagacctctctcttgttgatgtctgctggccag ctcccctcagcattactagctccgtggccctccagatctttttcatagct gaggtccatccattatgaatggatctttgtgaatcatcatatatttttta tgaatattgttctccatacaaggctaccctttttctacagagcctatatt catattcttccttctcaggaataccccaccctgttgaagttaatggctgg cctccccttgtccagtgctaacttccctttgagctcccagagggaaggta ttatgtgtttgactgcatcatccatcactcaacagttaatgtttgttgaa ttaatgaaaatagaatagaaaaattgagactctgagaaaattggactcat tattgttttttatcaaaaatagaaatttcctgttagactagcagagtgtt ctagaatattgccaactttctttggatcatagcccatagtcctatcatca cacgtgctttttatagccatgtataaaatatttagtttctttggaaatag tggctgaaagtggtaggattcaggtggctgcacctccccacagagtccta gcctctcaggatggattttgtgtctcgtattccagcagctgctcactgat gaaagcaccaattttgtgtccttcagagagctgggtgtttccctggaagc ctggggctcatccctttttgattttccccaagagcttcctgtttagctgc acccctttccttaacatctggatgctagagcagttctagcagctccacaa caattcaaagcccaggttgctgcattgcattccaaaccataaatgaatgt cttggaagtgccttgtgccaaaaatgaacagcttcgctgctccccacgca tatggatcttccacctcggaaggt	gaattccatttttctcatccaagtagaatatgataacaatccctgccttc ctgggctgtttgcaagttctaagggatataaagcatacaggtaaggaggg gagatgccgctatctgaatttcaaagataaagacaggagattaggaaatg catgtcatgtgcccggatctgtacatcctttcaggaatctagtgtgggcc tgcagtaaataaagttttggattctagagtcactgtagtgaggtgcaagg ggcaataacaacaacaacaacaacaacaaacttctgctgggcagtatgga gagttatgatagcagttaaaaaaaatatcctgctgggcgtggtggcgcac acctttaatcccagcatttgggaggcagaggcaggcagatttctgagttc gaggccagcctggtctacagagtgagttccaggacagccagggcttcaga gaaaccctgtcttgaaaaaccaaaaaaaccaaaaaaccaaaaaaaaaaaa attccaacaaggtcatggcacatgcgtgaacgacagcaatgggacttgaa ctcatgactctaaatctgatgcttcctatattctccctgttaagtgggaa tcagccaggacttctgcagtgaaggagcattcagtaaacaaaagcgatat ctgaactgaaactggccacagccagtccttatggtctcaagagagctcca gtgagagtttacattggtccaggaaagaaaagccaacttctgcctgtcag aatcagggaaagcctgttcaaggaggaagtgaacccacccatagtcatgt aagcatccaaaggatacctgcagaagagaggccagtgatgggagggttgg gggggg
quality values	Open. Hide. 58 26 39 36 58 26 18 34 58 58 58 62 62 52 62 62 54 62 47 42 62 62 62 62 47 62 51 42 62 62 42 33 32 24 24 31 31 28 32 44 43 45 56 56 44 44 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 59 59 59 43 43 48 59 56 54 43 56 51 62 62 62 62 59 59 54 62 62 62 62 59 62 62 62 62 62 62 62 54 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 44 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 58 58 58 58 58 58 58 54 47 54 58 58 58 54 54 58 58 58 58 54 58 58 58 58 58 54 40 58 58 58 58 58 47 47 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 46 38 58 54 58 58 54 39 58 58 58 58 58 58 58 58 58 58 58 58 51 58 53 54 58 58 50 50 51 35 41 41 58 58 33 58 50 47 36 42 52 47 58 58 58 54 58 58 49 58 41 58 58 58 52 58 58 49 51 51 38 37 54 53 53 58 58 51 50 54 53 53 51 58 58 49 58 49 58 50 58 58 51 33 58 51 52 52 40 50 37 50 52 54 38 51 58 54 52 46 40 58 54 47 58 38 58 58 58 58 33 37 58 58 54 50 51 42 50 50 53 52 51 32 54 54 54 32 45 54 50 37 51 40 53 49 32 51 53 53 34 51 54 49 54 54 54 54 50 37 45 45 32 54 54 54 52 53 39 34 49 54 37 49 54 45 53 53 33 51 32 29 37 37 40 37 40 45 30 53 43 27 54 26 32 54 33 33 43 32 52 34 49 35 37 32 34 48 39 28 52 35 41 42 53 54 45 34 44 51 29 53 32 37 40 39 35 32 31 30 52 49 40 40 35 40 31 24 31 40 27 34 35 36 39 40 40 35 42 32 34 34 26 36 45 53 53 53 51 42 33 31 31 36 42 18 20 31 42 30 16 31 10 46 51 51 30 30 31 51 25 26 30 31 51 35 38 31 51 30 26 32 28 51 33 26 24 32 35 36 25 26 27 26 39 47 30 26 26 32 29 25 42 31 24 31 26 37 36 30 24 46 18 42 32 29 42 36 32 24 31 35 38 32 48 46 34 23 31 28 14 31 22 29 39 29 25 35 18 37 31 32 42 32 30 30 14 31 33 27 32 14 11 10 48 46 39 31 29 41 35 32 30 31 21 6 16 23 31 32 32 31 28 28 19 16 29 27 31 19 11 21 22 32 23 31 25 33 33 30 47 11 18 17 18 23 14 12 7 18 47 48 29 30 8 16 7 18 23 25 33 21 17 9 31 8 17 16 20 31 31 44 30 15 37 14 42 22 25 41 28 19 13 19 14 22 16 13 17 23 20 34 34 28 12 25 24 28 33 29 48 18 22 43 43 40 33 27 33 24 36 36 14 8 31 33 18 6 20 10 15 9 32 14 23 14 23 15 14 9 39 32 21 11 27 31 27 25 19 34 33 36 23 18 38 15 9 14 15 18 11 6 7 12 28 24 10 11 20 19 7 8 27 13 30 11 13 7 8 14 24 27 28 19 13 8 7 20 22 22 13 9 7 26 10 7 5 4 6 6 26 9 9 7 12 30 13 5 9 29 18 9 10 14 14 24 27 20 7 13 14 13 21 13 17 7 12 16 13 15 13 15 17 5 17 16 6 9 17 18 17 5 8 4 3 2 6 11 7 4 5 21 7 3 10 5 5 11 4 12 6 4 11 7 13 9 3 3 5 24 28 11 4 11 5 3 4 23 5 5 16 12 7 5 8 5 4 4 5 13 23 8 8 4 12 4 6 5 4 13 7 11 4 8 4 7 9 17 5 10 4 4 8 6 4 3 2 6 6 3 2 3	Open. Hide. 62 49 51 47 62 62 44 47 62 62 31 24 26 28 18 20 20 27 23 13 21 25 34 28 49 43 62 62 59 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 50 34 43 43 49 35 34 40 34 36 36 40 46 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 59 59 59 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 59 62 62 62 54 54 62 62 62 62 62 59 62 62 62 62 59 59 59 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 43 62 62 62 62 62 56 56 56 49 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 56 35 40 56 62 62 62 62 62 62 62 62 62 62 38 43 62 62 62 49 46 62 62 62 62 62 62 62 52 46 62 51 58 58 54 54 58 58 58 54 58 58 58 58 58 58 58 58 58 58 53 46 46 58 58 58 58 58 43 46 54 54 58 58 58 58 58 43 54 39 58 58 49 58 58 58 58 58 58 58 58 58 58 58 58 42 50 58 58 48 58 58 58 51 47 50 58 58 58 54 51 52 50 58 58 58 58 53 58 58 50 50 50 58 52 51 58 58 48 51 52 58 58 58 41 40 58 51 51 49 51 49 49 53 35 58 58 51 50 51 48 58 53 58 58 53 52 58 54 54 50 58 53 58 50 43 58 41 51 47 41 49 54 53 45 49 58 58 40 58 41 50 33 38 50 53 54 50 44 44 40 35 52 41 32 54 52 37 50 39 26 34 53 49 53 54 54 47 40 42 53 54 54 54 37 54 49 32 51 36 51 54 41 37 35 40 39 54 47 41 40 54 54 54 34 53 44 38 35 45 51 54 53 52 41 44 40 51 53 42 54 44 44 52 54 39 32 45 32 52 31 34 41 40 24 42 29 34 52 51 52 45 40 53 52 32 52 34 31 18 46 31 53 35 53 31 42 45 31 41 31 31 43 45 51 30 51 30 51 51 20 31 31 20 19 41 31 51 31 31 31 30 18 31 48 51 51 30 46 48 23 23 9 5 12 18 30 23 42 29 31 42 42 46 25 28 35 31 34 31 21 33 31 30 31 15 7 46 31 25 46 31 31 31 28 20 37 16 36 31 25 30 31 36 41 26 33 30 21 21 37 27 31 25 35 41 39 30 31 46 30 31 37 30 20 31 31 22 20 26 31 31 31 24 29 26 42 22 42 13 44 17 38 32 32 31 31 26 25 25 31 29 29 18 44 31 14 41 24 29 18 25 15 11 21 31 31 32 28 32 22 37 6 15 11 43 21 5 5 6 43 37 37 43 34 24 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_81538285_81539453
seq2: B6Ng01-216D24.b_43_1216

seq1  GAATTCAAGTGTAACTTACACTGTTACATTTTTATTTGCTAAATCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTAACTTACACTGTTACATTTTTATTTGCTAAATCAAAAG  50

seq1  TCTAGAGTCAGTAACGATTCCTACCATGTTTCTTTGAGCTTGACCCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTCAGTAACGATTCCTACCATGTTTCTTTGAGCTTGACCCCCCT  100

seq1  AACTTTGATGATGGCTTCCTTGCTCTAAGATGAGATCTTGCCAATGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGATGATGGCTTCCTTGCTCTAAGATGAGATCTTGCCAATGGAAC  150

seq1  ACCCTGTCTCTGTTTTCCTGTAATTAAACAATGCGATCTCTTAGTATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCTGTTTTCCTGTAATTAAACAATGCGATCTCTTAGTATCTC  200

seq1  ACACAGCCCCCCCCCCCTCTCTCTCTCTCTCCCCATTCTATTGGCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCCCCCCCCCCTCTCTCTCTCTCTCCCCATTCTATTGGCCTTCA  250

seq1  GTTCCTCTTTCTTTCCACAGACCTCTCTCTTGTTGATGTCTGCTGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTTTCTTTCCACAGACCTCTCTCTTGTTGATGTCTGCTGGCCAG  300

seq1  CTCCCCTCAGCATTACTAGCTCCGTGGCCCTCCAGATCTTTTTCATAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCAGCATTACTAGCTCCGTGGCCCTCCAGATCTTTTTCATAGCT  350

seq1  GAGGTCCATCCATTATGAATGGATCTTTGTGAATCATCATATATTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCATCCATTATGAATGGATCTTTGTGAATCATCATATATTTTTTA  400

seq1  TGAATATTGTTCTCCATACAAGGCTACCCTTTTTCTACAGAGCCTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGTTCTCCATACAAGGCTACCCTTTTTCTACAGAGCCTATATT  450

seq1  CATATTCTTCCTTCTCAGGAATACCCCACCCTGTTGAAGTTAATGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTTCCTTCTCAGGAATACCCCACCCTGTTGAAGTTAATGGCTGG  500

seq1  CCTCCCCTTGTCCAGTGCTAACTTCCCTTTGAGCTCCCAGAGGGAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTGTCCAGTGCTAACTTCCCTTTGAGCTCCCAGAGGGAAGGTA  550

seq1  TTATGTGTTTGACTGCATCATCCATCACTCAACAGTTAATGTTTGTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTTTGACTGCATCATCCATCACTCAACAGTTAATGTTTGTTGAA  600

seq1  TTAATGAAAATAGAATAGAAAAATTGAGACTCTGAGAAAATTGGACTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAAATAGAATAGAAAAATTGAGACTCTGAGAAAATTGGACTCAT  650

seq1  TATTGTTTTTTATCAAAAATAGAAATTTCCTGTTAGACTAGCAGAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTTATCAAAAATAGAAATTTCCTGTTAGACTAGCAGAGTGTT  700

seq1  CTAGAATATTGCCAACTTTCTTTGGATCATAGCCCATAGTCCTATCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATATTGCCAACTTTCTTTGGATCATAGCCCATAGTCCTATCATCA  750

seq1  CACGTGCTTTTTATAGCCATGTATAAAATATTTAGTTTCTTTGGAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCTTTTTATAGCCATGTATAAAATATTTAGTTTCTTTGGAAATAG  800

seq1  TGGCTGAAAGTGGTAGGATTCAGGTGGCTGCACCTCCCCACAGAGTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAAGTGGTAGGATTCAGGTGGCTGCACCTCCCCACAGAGTCCTA  850

seq1  GCCTCTCAGGATGGATTTTGTGTCTCGTATTCCAGCAGCTGCTCACTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAGGATGGATTTTGTGTCTCGTATTCCAGCAGCTGCTCACTGAT  900

seq1  GAAAGCACC-ATTTTGTGTCCTTCAGAGAGCTGGGTG-TTCCCTGGAAGC  948
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  GAAAGCACCAATTTTGTGTCCTTCAGAGAGCTGGGTGTTTCCCTGGAAGC  950

seq1  CTGGGGGCTCATCCCTTTTTGATTTTCCCCAAGAGC-TCCTGTTTAGCTG  997
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CT-GGGGCTCATCCCTTTTTGATTTTCCCCAAGAGCTTCCTGTTTAGCTG  999

seq1  CACCCCTTTCCTT-ACATCTGGATGCTAAGAGGCAGTTCTAGCAGCTCCA  1046
      ||||||||||||| ||||||||||||| ||| ||||||||||||||||||
seq2  CACCCCTTTCCTTAACATCTGGATGCT-AGA-GCAGTTCTAGCAGCTCCA  1047

seq1  C-ACAA-TCAAAGCCCCAGGTTGCTGCATTGCA-TCCAAACCATAAATGA  1093
      | |||| |||||| ||||||||||||||||||| ||||||||||||||||
seq2  CAACAATTCAAAG-CCCAGGTTGCTGCATTGCATTCCAAACCATAAATGA  1096

seq1  GATGTTCCTGGGAAGTGC--TGTG-CAGAAAGGAGCAGC-TCGCTG--CG  1137
       ||||  || ||||||||  |||| || ||| || |||| ||||||  | 
seq2  -ATGT--CTTGGAAGTGCCTTGTGCCAAAAATGAACAGCTTCGCTGCTCC  1143

seq1  CCACGCAGATAGGATCTTCCACCTCGGAAGGT  1169
      ||||||| || |||||||||||||||||||||
seq2  CCACGCATAT-GGATCTTCCACCTCGGAAGGT  1174

seq1: chr11_81678084_81678937
seq2: B6Ng01-216D24.g_65_920 (reverse)

seq1  CCCCCCCCCACCCT-CCATCACTGGCCTCTCTTCTGCAGGTATCC-TTGG  48
      |||||||| ||||| |||||||||||||||||||||||||||||| ||||
seq2  CCCCCCCCAACCCTCCCATCACTGGCCTCTCTTCTGCAGGTATCCTTTGG  50

seq1  ATGCTTACATGACTATGGGTGGGTTCACTTCCTCCTTGAACAGGCTTTCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACATGACTATGGGTGGGTTCACTTCCTCCTTGAACAGGCTTTCC  100

seq1  CTGATTCTGACAGGCAGAAGTTGGCTTTTCTTTCCTGGACCAATGTAAAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTGACAGGCAGAAGTTGGCTTTTCTTTCCTGGACCAATGTAAAC  150

seq1  TCTCACTGGAGCTCTCTTGAGACCATAAGGACTGGCTGTGGCCAGTTTCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGGAGCTCTCTTGAGACCATAAGGACTGGCTGTGGCCAGTTTCA  200

seq1  GTTCAGATATCGCTTTTGTTTACTGAATGCTCCTTCACTGCAGAAGTCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATATCGCTTTTGTTTACTGAATGCTCCTTCACTGCAGAAGTCCT  250

seq1  GGCTGATTCCCACTTAACAGGGAGAATATAGGAAGCATCAGATTTAGAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTCCCACTTAACAGGGAGAATATAGGAAGCATCAGATTTAGAGT  300

seq1  CATGAGTTCAAGTCCCATTGCTGTCGTTCACGCATGTGCCATGACCTTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTCAAGTCCCATTGCTGTCGTTCACGCATGTGCCATGACCTTGT  350

seq1  TGGAATTTTTTTTTTTTTGGTTTTTTGGTTTTTTTGGTTTTTCAAGACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTTTTTTTTTTGGTTTTTTGGTTTTTTTGGTTTTTCAAGACAG  400

seq1  GGTTTCTCTGAAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGAAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  450

seq1  GGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAATGCTGGGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAATGCTGGGATT  500

seq1  AAAGGTGTGCGCCACCACGCCCAGCAGGATATTTTTTTTAACTGCTATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGCGCCACCACGCCCAGCAGGATATTTTTTTTAACTGCTATCA  550

seq1  TAACTCTCCATACTGCCCAGCAGAAGTTTGTTGTTGTTGTTGTTGTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCCATACTGCCCAGCAGAAGTTTGTTGTTGTTGTTGTTGTTGTT  600

seq1  ATTGCCCCTTGCACCTCACTACAGTGACTCTAGAATCCAAAACTTTATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCCTTGCACCTCACTACAGTGACTCTAGAATCCAAAACTTTATTT  650

seq1  ACTGCAGGCCCACACTAGATTCCTGAAAGGATGTACAGATCCGGGCACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGCCCACACTAGATTCCTGAAAGGATGTACAGATCCGGGCACAT  700

seq1  GACATGCATTTCCTAATCTCCTGTCTTTATCTTTGAAATTCAGATAGCGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCATTTCCTAATCTCCTGTCTTTATCTTTGAAATTCAGATAGCGG  750

seq1  CATCTCCCCTCCTTACCTGTATGCTTTATATCCCTTAGAACTTGCAAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCCTCCTTACCTGTATGCTTTATATCCCTTAGAACTTGCAAACA  800

seq1  GCCCAGGAAGGCAGGGATTGTTATCATATTCTACTTGGATGAGAAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAAGGCAGGGATTGTTATCATATTCTACTTGGATGAGAAAAATG  850

seq1  GAATTC  854
      ||||||
seq2  GAATTC  856

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information