BAC Information

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BAC

Clone NameB6Ng01-216G13
Chromosome11 (Build37)
Map Location 73,553,816 - 73,554,896
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1
Downstream geneOlfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216G13.bB6Ng01-216G13.g
ACCGA033107GA033108
length1,3071,110
definitionB6Ng01-216G13.b B6Ng01-216G13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggttgttttgtgtgaattattgtgtattaatagaaatttaag
gttgtaatattagactaaattgtacataagctgttgatttaaagtatgat
gtaaagttatagttttatggttcttatcattatttttattataggtagat
tgttaatgttagggtaaaagacaaattttaaacaaaaaggggatatgaag
tgtaagttcctgtttgtatcatgtgatatatactcatgtggtgtttgagg
caagacccctgtggacatgtgatatttggagagaatataagtgggactca
atggacagtgacagggtgcttgcatagctagcacttcactcatcttcatt
tccttgaaaaaagcatgacagagaactggtgtcttctgtttgtttgattg
ttttgttttgttttgttttgttttgttttgtttgtcattcccactgactt
gtgccatttcggtggaggcctggtgggttctactggattatgccacattg
ttgattcatgtttagtgaagcttttgaactggactgttgtatcctagcaa
actgagattagaatcactctagaaaactacttctaaacaggtccacctcc
ccttgtcctattttccatcttctctctcctacctttggatggtggtctag
acgggtagtcaaagagtttgagaaactttaggaaagtaggttttgaaaac
tctaagcccataacaaggtgcaataagcctagccataaacgatcatatta
aggctgaataaggcatggagtatgagggaaagcatccaaagtgcaggcaa
gaggatcagaaacaccgttccaactgttaggagtcccacaaaatcttcaa
gctaaacaaccacagcatgtaagcagaggatctagaacagacaatgcaga
ctctacatttgtagcttcagtctctgtgattgcctatgagcccagcataa
tgattatgtaggtctttttttgtggcgtctttgaccactggatctcctgt
aattcatcctttcactctcctgtgggagttccctgagcttggcctaatgt
tggctttgaattttgcatcaatttcctccactgctagaaggaaggcctct
ttgaatgatgaattcatgtgagttcacggcagactccatataacacttta
tttactttagttttttcttcagcaatttggcttatctaaggctggggact
atcgttcagcgtcggctcaaggcgtttcgaatgcttccactctgcttgac
ctagattgaacagatatggtttgaccactcacttccatgttagatacgtg
cgtggat
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtgatggtaaactctcgtcccgagttttttctcgtcccggaattcggc
accaattgttattagacgcgttctcacgaccggccaggaagaacaccaca
gaccagaatcttctgcggcaaagctttatttcttacatcttcaggagcaa
gcgtgtaagaagcaagagagcaagaagcaagagagagaagcaagagagag
agaaaacgaaaccccgtccctattttaggagaattctccttcgcctcgga
cgtgtcactccctgattggctgcagcccatcggccgagttgacgtcacgg
ggaaggcagagcacaagtagtcataagatacccttggcacatgcgcagat
tatttgtttaccacttagaacacagctgtcagcgccatcttgtaacggcg
aatgtgggcgcggctcccaacatacccccaccattctacccaccacttct
gctttatctcttgtgaatctcagtaatcctgcacacactttcataacacg
tgtgttctttccttctacatctctcccttaaggtctccacttttcctctc
tcaaaaataatttttttagtattatatcatctatacataatcacacatgc
atacaaatatataaaaatgttattggggatagagagatgtctcagtgaga
agttacaagaatttgttgttattgcagaggatccatattccttctccata
ggagaatcatttttggcctccatgtgcaacaggcaaggatatgttgctct
atttatgaatttataggcaaaacacttagcacataactcatttctttaca
attcactgaggtattgagagttcgggtactccttccctgtcatgtctagt
agacactattcttgaagcaaggtatggctctctaatttttataatttttg
tccccttttccatgatggtatcctagcccttggatgtactgtgtactgaa
gaatgcagcaacctggtattttacaatgctacattaatatgggggtctgg
tattcttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73553816_73554896
seq2: B6Ng01-216G13.g_91_1174

seq1  ACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTC  50

seq1  TGGAATGAGGGATCTTCCTTGCGCCAGTGATGGTAAACTCTCGTCCCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAGGGATCTTCCTTGCGCCAGTGATGGTAAACTCTCGTCCCGAG  100

seq1  TTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCA  150

seq1  CGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAGCTT  200

seq1  TATTTCTTACATCTTCAGGAGCAAGCGTGTAAGAAGCAAGAGAGCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTACATCTTCAGGAGCAAGCGTGTAAGAAGCAAGAGAGCAAGAA  250

seq1  GCAAGAGAGAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTATTTT  300

seq1  AGGAGAATTCTCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATTCTCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGC  350

seq1  CCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAA  400

seq1  GATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGC  450

seq1  TGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACATACC  500

seq1  CCCACCATTCTACCCACCACTTCTGCTTTATCTCTTGTGAATCTCAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATTCTACCCACCACTTCTGCTTTATCTCTTGTGAATCTCAGTAA  550

seq1  TCCTGCACACACTTTCATAACACGTGTGTTCTTTCCTTCTACATCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACACACTTTCATAACACGTGTGTTCTTTCCTTCTACATCTCTCC  600

seq1  CTTAAGGTCTCCACTTTTCCTCTCTCAAAAATAATTTTTTTAGTATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGTCTCCACTTTTCCTCTCTCAAAAATAATTTTTTTAGTATTATA  650

seq1  TCATCTATACATAATCACACATGCATACAAATATATAAAAATGTTATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATACATAATCACACATGCATACAAATATATAAAAATGTTATTGG  700

seq1  GGATAGAGAGATGTCTCAGTGAGAAGTTACAAGAATTTGTTGTTATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGAGATGTCTCAGTGAGAAGTTACAAGAATTTGTTGTTATTGCA  750

seq1  GAGGATCCATATTCCTTCTCCATAGGAGAATCATTTTTGGCCTCCATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCATATTCCTTCTCCATAGGAGAATCATTTTTGGCCTCCATGTG  800

seq1  CAACAGGCAAGGATATGTTGCTCTATTTATGAATTTATAGGCAAAACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCAAGGATATGTTGCTCTATTTATGAATTTATAGGCAAAACACT  850

seq1  TAGCACATAACTCATTTCTTTTACAATTCACTGAGGTATTGAGAGTTTCG  900
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TAGCACATAACTCATTTC-TTTACAATTCACTGAGGTATTGAGAG-TTCG  898

seq1  GGTACTCCTTCCCTGTCATGTCTAGTAGACACTA-TCTTGAAGCAAGGTA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTACTCCTTCCCTGTCATGTCTAGTAGACACTATTCTTGAAGCAAGGTA  948

seq1  TGGCTCTCTAATTTTTATAATTTTTGTCCCCTTTTCCATGATGGTATCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTAATTTTTATAATTTTTGTCCCCTTTTCCATGATGGTATCCT  998

seq1  AG-CCTTGGATGTACTGGTTGTACTGAAG-ATGCAGCAA-CTGGTATTTT  1046
      || ||||||||||||||  |||||||||| ||||||||| ||||||||||
seq2  AGCCCTTGGATGTACTG--TGTACTGAAGAATGCAGCAACCTGGTATTTT  1046

seq1  AC-ATGCTACAATTATAT-GGTGTCT-GTATTCTTGAC  1081
      || |||||||| | |||| || |||| |||||||||||
seq2  ACAATGCTACATTAATATGGGGGTCTGGTATTCTTGAC  1084