BAC Information

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BAC

Clone NameB6Ng01-216L07
Chromosome11 (Build37)
Map Location 89,009,728 - 89,120,216
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
Downstream geneNog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216L07.bB6Ng01-216L07.g
ACCGA033325GA033326
length1,021978
definitionB6Ng01-216L07.b B6Ng01-216L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,009,728 - 89,010,751)(89,119,243 - 89,120,216)
sequence
gaattctcctctgttttacctctgttatcccattctcttcaaaaccatgt
ccaaaactgctacttcccacagaggagtctttctgctttttccaaccgag
gttttttttttttgtttttttgttttttttttgttttttttgtttttttt
tttttgagacagggtttctctgtgtagccctggctgtcctggaactcact
ttgtagaccaagctggccttgaactcagaaatctgcctgcctctgcctcc
cgagtgctgggattaaaggagtgtgccaccatgcccggcttgaggttttt
ttttttttaaagatttatttattatatctaggtacactgtagctgtcttc
agacaccctagaagaaggtattagatctcattacagatggttgcgagcta
ccatgtggttgctgggatttgaactcagggcctatggaagagcagtcagt
gctcttacccactgagccatcttgccatccccatccccaccgagttttga
ctgttttctttgtgccaaatagctataactcggatcaccccacccccacc
ttctttcacgaataaaagaaccagtattaggcagggtctgggagacagaa
gactgtaaaagttatgagtatgctcttatggagctcagggtccaagacag
tgggtttcaaaccttggctacgcattctatgtagagtctgaagtctctct
ggaggatggtaagtggggaagtcaggagcgattaacagggtggacggctg
cctctttccttattcccaacttctcggtctacaaagttgcttctgtggtt
acctgttttacttgtaggtctcagcagaaaggcttccaactgtttacaac
atgcctgggaacaaagttcatttgtataagatcaagtattgcaattcctt
tctctctctctaaacgagaagttacgtattataccttccatatattaaat
ttatactactcagcataaccagatgctagttaattatgttctatactgct
gctgaggataatgacaagaaa
gaattccaggacagccaggactacatagaaaccctgtctcaaacgacccc
cccccctcaaaaaaaagctagtcacaaaaaaacatatggtccttgtgttt
aaggtaagaagattcaaagcacagagagcttaaggtcacatagctggtgg
gggacacagtcagatgctaacccaaatacccaggttttctcttctcttgc
ttatttctttttatttttaattttaagacaagtctcactgtgcagcccaa
ggctagccctgggctttcagaattccttctgcctcaacttcctgggtact
gggattctaagtgtgagccatccagcctggttaacctgtgccaaatgctc
ctcacaacagagtttaccctggcctcctgatccacagcatctcaaggcct
cgagactttccagagtccaaaagtagagtcccagaaccagccatggctct
ctctttaatgaaaaatggggcataggtacagacttggtacccaccatgcc
ctgcctcccagcgtaagccaggccagccctaaggaggcacactaaggcct
tgaagccttcattctgaagcctgtatggatgataactgagtctctgcaca
tggttctgatttgcatgtaccatgcctcctctctgcaaagccacctcaag
tccagagaggtgcagaagccacgcctccccctcccttctcccctccccct
ctccctcctcttctcatcctccagtttctctgccactttgcctctctgac
agctttcctctttgaatcagagcactagaccctgccaagtgaaaatgtaa
acctcaaagggcttcagcagtcccagagatgccaggactcctgctgggcg
gcagcactctcctgcaggccaaaggcaggcctgtgctcagggccttgagg
ggtgatgatgtattgaagggtcccagtgcacccttcaggcttgtcctgtc
tcttcaacagggggaggaagaaggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89009728_89010751
seq2: B6Ng01-216L07.b_45_1065

seq1  GAATTCTCCTCTGTTTTACCTCTGTTATCCCATTCTCTTCAAAACCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTGTTTTACCTCTGTTATCCCATTCTCTTCAAAACCATGT  50

seq1  CCAAAACTGCTACTTCCCACAGAGGAGTCTTTCTGCTTTTTCCAACCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGCTACTTCCCACAGAGGAGTCTTTCTGCTTTTTCCAACCGAG  100

seq1  GTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTTT  150

seq1  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  200

seq1  TTGTAGACCAAGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAAGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC  250

seq1  CGAGTGCTGGGATTAAAGGAGTGTGCCACCATGCCCGGCTTGAGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGAGTGTGCCACCATGCCCGGCTTGAGGTTTTT  300

seq1  TTTTTTTTAAAGATTTATTTATTATATCTAGGTACACTGTAGCTGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAGATTTATTTATTATATCTAGGTACACTGTAGCTGTCTTC  350

seq1  AGACACCCTAGAAGAAGGTATTAGATCTCATTACAGATGGTTGCGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCTAGAAGAAGGTATTAGATCTCATTACAGATGGTTGCGAGCTA  400

seq1  CCATGTGGTTGCTGGGATTTGAACTCAGGGCCTATGGAAGAGCAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTGCTGGGATTTGAACTCAGGGCCTATGGAAGAGCAGTCAGT  450

seq1  GCTCTTACCCACTGAGCCATCTTGCCATCCCCATCCCCACCGAGTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACCCACTGAGCCATCTTGCCATCCCCATCCCCACCGAGTTTTGA  500

seq1  CTGTTTTCTTTGTGCCAAATAGCTATAACTCGGATCACCCCACCCCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTTGTGCCAAATAGCTATAACTCGGATCACCCCACCCCCACC  550

seq1  TTCTTTCACGAATAAAAGAACCAGTATTAGGCAGGGTCTGGGAGACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACGAATAAAAGAACCAGTATTAGGCAGGGTCTGGGAGACAGAA  600

seq1  GACTGTAAAAGTTATGAGTATGCTCTTATGGAGCTCAGGGTCCAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAAAGTTATGAGTATGCTCTTATGGAGCTCAGGGTCCAAGACAG  650

seq1  TGGGTTTCAAACCTTGGCTACGCATTCTATGTAGAGTCTGAAGTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCAAACCTTGGCTACGCATTCTATGTAGAGTCTGAAGTCTCTCT  700

seq1  GGAGGATGGTAAGTGGGGAAGTCAGGAGCGATTAACAGGGTGGACGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGTAAGTGGGGAAGTCAGGAGCGATTAACAGGGTGGACGGCTG  750

seq1  CCTCTTTCCTTATTCCCAACTTCTCGGTCTAC-AAGGTGCTTCTGTGGTT  799
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  CCTCTTTCCTTATTCCCAACTTCTCGGTCTACAAAGTTGCTTCTGTGGTT  800

seq1  ACCTGTTTTACTTGTAGGTCTCAGCAGAAAGGCTTCC-ACTG-TTACAAC  847
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  ACCTGTTTTACTTGTAGGTCTCAGCAGAAAGGCTTCCAACTGTTTACAAC  850

seq1  ATGCCTGGGAACAA--TTCATTTGTATAAGATCAAGTATTTGCAAATTCT  895
      ||||||||||||||  |||||||||||||||||||||| |||||| | ||
seq2  ATGCCTGGGAACAAAGTTCATTTGTATAAGATCAAGTA-TTGCAATTCCT  899

seq1  TTCTCTCTCTCTAAAACATAGAAG-TACATATTATAACATCCATATAATT  944
      |||||||||||||||    ||||| ||| ||||||| | ||||||| |||
seq2  TTCTCTCTCTCTAAA--CGAGAAGTTACGTATTATACCTTCCATAT-ATT  946

seq1  AATATTATACTACTCAGCATAACACAAGTGCTATGTAAATTATTGTTCTA  994
      ||  ||||||||||||||||||| ||  ||||| || ||||| |||||||
seq2  AAATTTATACTACTCAGCATAAC-CAGATGCTA-GTTAATTA-TGTTCTA  993

seq1  TACTGCTGCTTGAGGAATAATGACAAGAAA  1024
      ||||||||| ||||| ||||||||||||||
seq2  TACTGCTGC-TGAGG-ATAATGACAAGAAA  1021

seq1: chr11_89119243_89120216
seq2: B6Ng01-216L07.g_69_1046 (reverse)

seq1  AGAGCC-TCCTCCT-CACCTG-TGAAGAGACCAGACAAGCCTGAAGGGTG  47
      |||||| || |||| | |||| |||||||||  |||||||||||||||||
seq2  AGAGCCTTCTTCCTCCCCCTGTTGAAGAGACAGGACAAGCCTGAAGGGTG  50

seq1  CACTGGGACCCTTCAATACATCATCACCCCTC-AGGCCCTGAGCCACAGG  96
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CACTGGGACCCTTCAATACATCATCACCCCTCAAGGCCCTGAG-CACAGG  99

seq1  CCTGCCTTTGGCCTGCAGGAGAGTGCTG-CGCCCAGCAGGAGTCCTGGCA  145
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGCCTTTGGCCTGCAGGAGAGTGCTGCCGCCCAGCAGGAGTCCTGGCA  149

seq1  TCTCTGGGACTGCTGAAGCCCTTTGAGGTTTACATTTTCACTTGGCAGGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGACTGCTGAAGCCCTTTGAGGTTTACATTTTCACTTGGCAGGG  199

seq1  TCTAGTGCTCTGATTCAAAGAGGAAAGCTGTCAGAGAGGCAAAGTGGCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCTCTGATTCAAAGAGGAAAGCTGTCAGAGAGGCAAAGTGGCAG  249

seq1  AGAAACTGGAGGATGAGAAGAGGAGGGAGAGGGGGAGGGGAGAAGGGAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGGAGGATGAGAAGAGGAGGGAGAGGGGGAGGGGAGAAGGGAGG  299

seq1  GGGAGGCGTGGCTTCTGCACCTCTCTGGACTTGAGGTGGCTTTGCAGAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCGTGGCTTCTGCACCTCTCTGGACTTGAGGTGGCTTTGCAGAGA  349

seq1  GGAGGCATGGTACATGCAAATCAGAACCATGTGCAGAGACTCAGTTATCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATGGTACATGCAAATCAGAACCATGTGCAGAGACTCAGTTATCA  399

seq1  TCCATACAGGCTTCAGAATGAAGGCTTCAAGGCCTTAGTGTGCCTCCTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACAGGCTTCAGAATGAAGGCTTCAAGGCCTTAGTGTGCCTCCTTA  449

seq1  GGGCTGGCCTGGCTTACGCTGGGAGGCAGGGCATGGTGGGTACCAAGTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCCTGGCTTACGCTGGGAGGCAGGGCATGGTGGGTACCAAGTCT  499

seq1  GTACCTATGCCCCATTTTTCATTAAAGAGAGAGCCATGGCTGGTTCTGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATGCCCCATTTTTCATTAAAGAGAGAGCCATGGCTGGTTCTGGG  549

seq1  ACTCTACTTTTGGACTCTGGAAAGTCTCGAGGCCTTGAGATGCTGTGGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTTTTGGACTCTGGAAAGTCTCGAGGCCTTGAGATGCTGTGGAT  599

seq1  CAGGAGGCCAGGGTAAACTCTGTTGTGAGGAGCATTTGGCACAGGTTAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCCAGGGTAAACTCTGTTGTGAGGAGCATTTGGCACAGGTTAAC  649

seq1  CAGGCTGGATGGCTCACACTTAGAATCCCAGTACCCAGGAAGTTGAGGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGATGGCTCACACTTAGAATCCCAGTACCCAGGAAGTTGAGGCA  699

seq1  GAAGGAATTCTGAAAGCCCAGGGCTAGCCTTGGGCTGCACAGTGAGACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATTCTGAAAGCCCAGGGCTAGCCTTGGGCTGCACAGTGAGACTT  749

seq1  GTCTTAAAATTAAAAATAAAAAGAAATAAGCAAGAGAAGAGAAAACCTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAATTAAAAATAAAAAGAAATAAGCAAGAGAAGAGAAAACCTGG  799

seq1  GTATTTGGGTTAGCATCTGACTGTGTCCCCCACCAGCTATGTGACCTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGGTTAGCATCTGACTGTGTCCCCCACCAGCTATGTGACCTTAA  849

seq1  GCTCTCTGTGCTTTGAATCTTCTTACCTTAAACACAAGGACCATATGTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGTGCTTTGAATCTTCTTACCTTAAACACAAGGACCATATGTTT  899

seq1  TTTTGTGACTAGCTTTTTTTTGAGGGGGGGGGGTCGTTTGAGACAGGGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACTAGCTTTTTTTTGAGGGGGGGGGGTCGTTTGAGACAGGGTT  949

seq1  TCTATGTAGTCCTGGCTGTCCTGGAATTC  974
      |||||||||||||||||||||||||||||
seq2  TCTATGTAGTCCTGGCTGTCCTGGAATTC  978