BAC Information

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BAC

Clone NameB6Ng01-217F04
Chromosome11 (Build37)
Map Location 101,986,085 - 102,114,695
singlet/doubletdoublet
Overlap geneNags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867
Upstream geneTubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411
Downstream geneAsb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217F04.bB6Ng01-217F04.g
ACCGA033766GA033767
length896556
definitionB6Ng01-217F04.b B6Ng01-217F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,986,085 - 101,986,855)(102,114,156 - 102,114,695)
sequence
gaattctcaagagcactggcactgtcccaacacatgtccctctgctctgg
gacccaagtccaaggctctaagttccaggccacggaagggacttgctaag
ctgtactgagggaagatgtgaacggccctcaactcacaggaagggacaaa
caaaaaagacaagggccctgctttatctcaggtcacatgactgtgacttg
ctctacctgggatgctgagagagccgcctccttgaccctgagtagatagt
atgactgggtgcgctttctggcttctcctcattgtccctaatgtcttccc
aattgattggtcagataaaccttgatatagctaacacctggccattctga
aataaatatcccgtacctcagcctccctcagggccatctgcatgtcactg
agctgcggccagtgaatcactcgtgggatcatgtttgtttatttgtttgt
ctgtttatgagacaggatctcatgcaatccaagctagcctcaaatgaggc
tcacagagcaatcaagaataaccttgaacttctaattctcttgctttgac
cgcccacattctggtattacaggcacacaccgtcacccccatttatccaa
tgccggagtttgaaatccagacaaacactctcccacctgagctacatcga
cagtcgaggattaattatatttctatgagatgtttttggaggtgccttga
acgtacgctgtctgtcgtatcttttctatctgttcacgtggctaaagctc
aaaccgccacgttggcccagaaggcaatggccagccatgcctttggaatc
cagagtgaaaaacatgaaggattgctagattacatgacaattctctccca
cactagccctaagcctccatcctctgggactgtttgtttgtttggt
gaattcttacaatggctctctgtataggtacagaatgaatgcagagtctg
agacttgctgaggctgaagagatgcctcggtggttaagagcaatcactac
tcttccagagtacctgagttctgatcccagtactcatgtccagtgaccca
caactgtctgtcacttccgagccagatgatctgatgctctcttctggctt
ctagaaatttccacatgaacatgtacacactcagatatacacataatgta
tacataaactaaaaattaaaaaaggaaagaaccaggcagaggtaggtgga
tttctgagttcgaggccaacctggtgtacaaagtgagttccaggacagcc
aaggttacacagaaaaaccctgtctaggaaaaaaaaaaaaaaagaaagaa
aagaacgggagatttggactggtcaaaaaataaggttagaccccacttga
gcccccatccctacaccatttgcttaaaagaggaactgaggaggctggag
agatggctcagcagttaaaagctgactgctcttccagaggtcgtgggttt
aatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101986085_101986855
seq2: B6Ng01-217F04.b_43_814

seq1  GAATTCTCAAGAGCACTGGCACTGTCCCAACACATGTCCCTCTGCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGAGCACTGGCACTGTCCCAACACATGTCCCTCTGCTCTGG  50

seq1  GACCCAAGTCCAAGGCTCTAAGTTCCAGGCCACGGAAGGGACTTGCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAGTCCAAGGCTCTAAGTTCCAGGCCACGGAAGGGACTTGCTAAG  100

seq1  CTGTACTGAGGGAAGATGTGAACGGCCCTCAACTCACAGGAAGGGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGAGGGAAGATGTGAACGGCCCTCAACTCACAGGAAGGGACAAA  150

seq1  CAAAAAAGACAAGGGCCCTGCTTTATCTCAGGTCACATGACTGTGACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGACAAGGGCCCTGCTTTATCTCAGGTCACATGACTGTGACTTG  200

seq1  CTCTACCTGGGATGCTGAGAGAGCCGCCTCCTTGACCCTGAGTAGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTGGGATGCTGAGAGAGCCGCCTCCTTGACCCTGAGTAGATAGT  250

seq1  ATGACTGGGTGCGCTTTCTGGCTTCTCCTCATTGTCCCTAATGTCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGGTGCGCTTTCTGGCTTCTCCTCATTGTCCCTAATGTCTTCCC  300

seq1  AATTGATTGGTCAGATAAACCTTGATATAGCTAACACCTGGCCATTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTGGTCAGATAAACCTTGATATAGCTAACACCTGGCCATTCTGA  350

seq1  AATAAATATCCCGTACCTCAGCCTCCCTCAGGGCCATCTGCATGTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATCCCGTACCTCAGCCTCCCTCAGGGCCATCTGCATGTCACTG  400

seq1  AGCTGCGGCCAGTGAATCACTCGTGGGATCATGTTTGTTTATTTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGGCCAGTGAATCACTCGTGGGATCATGTTTGTTTATTTGTTTGT  450

seq1  CTGTTTATGAGACAGGATCTCATGCAATCCAAGCTAGCCTCAAATGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATGAGACAGGATCTCATGCAATCCAAGCTAGCCTCAAATGAGGC  500

seq1  TCACAGAGCAATCAAGAATAACCTTGAACTTCTAATTCTCTTGCTTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGCAATCAAGAATAACCTTGAACTTCTAATTCTCTTGCTTTGAC  550

seq1  CGCCCACATTCTGGTATTACAGGCACACACCGTCACCCCCATTTATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACATTCTGGTATTACAGGCACACACCGTCACCCCCATTTATCCAA  600

seq1  TGCCGGAGTTTGAAATCCAGACAAACACTCTCCCACCTGAGCTACATCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGAGTTTGAAATCCAGACAAACACTCTCCCACCTGAGCTACATCGA  650

seq1  CAGTCGAGGATTAATTATATTTCTATGAGATGTTTTTGGAGGTGCCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGAGGATTAATTATATTTCTATGAGATGTTTTTGGAGGTGCCTTGA  700

seq1  AGGTACGCTGTCTGTCGTATC-TTTCTATCTGTTCAGGTGGCTAAAGCTC  749
      | ||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ACGTACGCTGTCTGTCGTATCTTTTCTATCTGTTCACGTGGCTAAAGCTC  750

seq1  AAACCGCCACGTTGGCCCAGAA  771
      ||||||||||||||||||||||
seq2  AAACCGCCACGTTGGCCCAGAA  772

seq1: chr11_102114156_102114695
seq2: B6Ng01-217F04.g_67_606 (reverse)

seq1  CCTCTGGAAGAGCAGTCAGCTTTTAACTGCTGAGCCATCTCTCCAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAAGAGCAGTCAGCTTTTAACTGCTGAGCCATCTCTCCAGCCTC  50

seq1  CTCAGTTCCTCTCTTAAGCAAATGGTGTAGGGATGGGGGCTCAAGTGGGG  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCCTCTTTTAAGCAAATGGTGTAGGGATGGGGGCTCAAGTGGGG  100

seq1  TCTAACCTTATTTTTTGACCAGTCCAAATCTCCCGTTCTTTTCTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTTATTTTTTGACCAGTCCAAATCTCCCGTTCTTTTCTTTCTTT  150

seq1  TTTTTTTTTTTTCCTAGACAGGGTTTCTCTGTGTAACCTTGGCTGTCCTG  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTTTTTTTCCTAGACAGGGTTTTTCTGTGTAACCTTGGCTGTCCTG  200

seq1  GAACTCACTTTGTACACCAGGCTGGCCTCGAACTCAGAAATCCACCTACC  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTACACCAGGTTGGCCTCGAACTCAGAAATCCACCTACC  250

seq1  TCTGCCTGGTTCTTTCCTTTTTTAATTTTTAGTTTATGTATACATTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGGTTCTTTCCTTTTTTAATTTTTAGTTTATGTATACATTATGT  300

seq1  GTATATCTGAGTGTGTACATGTTCATGTGGAAATTTCTAGAAGCCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTGAGTGTGTACATGTTCATGTGGAAATTTCTAGAAGCCAGAAG  350

seq1  AGAGCATCAGATCATCTGGCTCGGAAGTGACAGACAGTTGTGGGTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCAGATCATCTGGCTCGGAAGTGACAGACAGTTGTGGGTCACTG  400

seq1  GACATGAGTACTGGGATCAGAACTCAGGTACTCTGGAAGAGTAGTGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGTACTGGGATCAGAACTCAGGTACTCTGGAAGAGTAGTGATTG  450

seq1  CTCTTAACCACCGAGGCATCTCTTCAGCCTCAGCAAGTCTCAGACTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACCACCGAGGCATCTCTTCAGCCTCAGCAAGTCTCAGACTCTGC  500

seq1  ATTCATTCTGTACCTATACAGAGAGCCATTGTAAGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTGTACCTATACAGAGAGCCATTGTAAGAATTC  540