BAC Information

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BAC

Clone NameB6Ng01-217O09
Chromosome11 (Build37)
Map Location 18,471,928 - 18,603,208
singlet/doubletdoublet
Overlap genenone
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneMeis1, LOC635455, LOC100042708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217O09.bB6Ng01-217O09.g
ACCGA034169GA034170
length1,044867
definitionB6Ng01-217O09.b B6Ng01-217O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,471,928 - 18,472,969)(18,602,359 - 18,603,208)
sequence
gaattctatgagcagcttgagattgtgttcacagtggtagaagcctgctt
tggttactctgtacacagagtcagtatacacaggctgaaagtgagaacag
atatatcttcaaagggtggcacaccctcaccttccacaagcacagccctg
cctcttaaaacacccctcctcccaaagtcttcagtagacacaagaagctg
aagtgtaagctcatgaaaacaaggtcaagaaagacattttagattcaata
cgtagatagagatgtggatagagaactggagtaagggtccaggaaagtgc
tcaggaatggggctctgggaaaggtggaggtcaggaacgcctgctggagg
gagctgagggatctttgtgaggcaatgagtgctggggttcaggaaggagc
agtgcagaaaggaagggccaggaaagccagagaaactcaacttgtatact
atcaacttcactgttttgtcaagcatctgttacttaaagaactggtcagg
gtaaccacataactctcctttattttccctttcctaaaagggtgattgtg
aaccttggagaactggcaaagttaagttacaaagctgccagcatcaggaa
agatctaggacagcattgcgtgggccattccctgctcggactttgaaaca
accttgccttgtatggtttgggagtactggagatcctcctatcccgtgcc
tcccgtttaaatgcctcttcagtctaagccatgcatctcactaaagtgcc
tgtcatggaacaccccaaaaggagctcagacagcaagcacagagtggtgg
agtggcagagtggcagcttgctcccctggaagtacttggctttctgcttg
gaactagcaggtggggtgttcttcagtgacttagcaagggggcaaattgc
ctcccttcttcattaacagccttaggacctgaaatttctcagcagacaat
ttgtagttaaagcatttcacagagatgtggaaggacaggccttgggtttt
gcttgttttcattaattcaggaaggggcttaatggggggggggg
gaattctttctacactactgctgtatttatttgcttgtattgagagttcc
cctcccctaatattctcaaaacaagaactatcagtttgtatactttttct
tgtgatatttttgctcagtttttagtatcaggataatactaaccacatat
agctaaaatgaatcttccttctatcttattaacagtaattttgtggagta
ctaattctttcttatttaggtagatagagaaaaactctggataatgttcc
tgaaataaaatccatacttatttattttacaaaccggtgaatctcatttt
ctacaaacttctccagtcatgaatttgttaagaatgtctgtgactctctt
gaggtggtgggttacactggtcgtcttagtaactgaaggctaaagcagga
gtgttgatgtgtttgaggccaacctttgctgcacagtgatctccaggcct
gccagagtgagcccttgtttaaaataacaaagaaatcccaaccctctaag
catgcattaggaattgtggtatgagctccaagtattgcaatgagaaatat
atgttgtgccctggaactgatagtttaatgttgatgaggagtccctcaag
aaagacttgtccaagtccaagcaagtatgactagaaggatgatttcttta
catcttctttgactatccagttcgatggaagcacagcaagttatgtaata
gagtttgggatgaagacaagcctggtggaaacacacctgttaatttcagg
tcatggaaaggatcacaagtttcagtccctgtctgggcttacagcattga
gtttcccagccagcccagacatctgagatatcatttaaaaaaaacgaatt
gaaaacaaaatcagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_18471928_18472969
seq2: B6Ng01-217O09.b_51_1094

seq1  GAATTCTATGAGCAGCTTGAGATTGTGTTCACAGTGGTAGAAGCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAGCAGCTTGAGATTGTGTTCACAGTGGTAGAAGCCTGCTT  50

seq1  TGGTTACTCTGTACACAGAGTCAGTATACACAGGCTGAAAGTGAGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTCTGTACACAGAGTCAGTATACACAGGCTGAAAGTGAGAACAG  100

seq1  ATATATCTTCAAAGGGTGGCACACCCTCACCTTCCACAAGCACAGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTCAAAGGGTGGCACACCCTCACCTTCCACAAGCACAGCCCTG  150

seq1  CCTCTTAAAACACCCCTCCTCCCAAAGTCTTCAGTAGACACAAGAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAAACACCCCTCCTCCCAAAGTCTTCAGTAGACACAAGAAGCTG  200

seq1  AAGTGTAAGCTCATGAAAACAAGGTCAAGAAAGACATTTTAGATTCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAGCTCATGAAAACAAGGTCAAGAAAGACATTTTAGATTCAATA  250

seq1  CGTAGATAGAGATGTGGATAGAGAACTGGAGTAAGGGTCCAGGAAAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGATAGAGATGTGGATAGAGAACTGGAGTAAGGGTCCAGGAAAGTGC  300

seq1  TCAGGAATGGGGCTCTGGGAAAGGTGGAGGTCAGGAACGCCTGCTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATGGGGCTCTGGGAAAGGTGGAGGTCAGGAACGCCTGCTGGAGG  350

seq1  GAGCTGAGGGATCTTTGTGAGGCAATGAGTGCTGGGGTTCAGGAAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGGGATCTTTGTGAGGCAATGAGTGCTGGGGTTCAGGAAGGAGC  400

seq1  AGTGCAGAAAGGAAGGGCCAGGAAAGCCAGAGAAACTCAACTTGTATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAAAGGAAGGGCCAGGAAAGCCAGAGAAACTCAACTTGTATACT  450

seq1  ATCAACTTCACTGTTTTGTCAAGCATCTGTTACTTAAAGAACTGGTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTCACTGTTTTGTCAAGCATCTGTTACTTAAAGAACTGGTCAGG  500

seq1  GTAACCACATAACTCTCCTTTATTTTCCCTTTCCTAAAAGGGTGATTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCACATAACTCTCCTTTATTTTCCCTTTCCTAAAAGGGTGATTGTG  550

seq1  AACCTTGGAGAACTGGCAAAGTTAAGTTACAAAGCTGCCAGCATCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGAGAACTGGCAAAGTTAAGTTACAAAGCTGCCAGCATCAGGAA  600

seq1  AGATCTAGGACAGCATTGCGTGGGCCATTCCCTGCTCGGACTTTGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAGGACAGCATTGCGTGGGCCATTCCCTGCTCGGACTTTGAAACA  650

seq1  ACCTTGCCTTGTATGGTTTGGGAGTACTGGAGATCCTCCTATCCCGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTTGTATGGTTTGGGAGTACTGGAGATCCTCCTATCCCGTGCC  700

seq1  TCCCGTTTAAATGCCTCTTCAGTCTAAGCCATGCATCTCACTAAAGTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTTAAATGCCTCTTCAGTCTAAGCCATGCATCTCACTAAAGTGCC  750

seq1  TGTCATGGAACACCCCAAAAGGAGCTCAGACAGCAAGCACAGAGTGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGAACACCCCAAAAGGAGCTCAGACAGCAAGCACAGAGTGGTGG  800

seq1  AGTGGCAGAGTGGCAGCTTGCTCCCCTGGAAGTACTTGGCTTTCTGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGAGTGGCAGCTTGCTCCCCTGGAAGTACTTGGCTTTCTGCTTG  850

seq1  GAACTAGCAGGTGGGGTGTTCTTCAGTGACTTAGCAAGGGGGCAAATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCAGGTGGGGTGTTCTTCAGTGACTTAGCAAGGGGGCAAATTGC  900

seq1  CTCCCTTCTTCATTAACAGCCTTAGGAACCTGAAATTTCTCAGCAGAC-A  949
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CTCCCTTCTTCATTAACAGCCTTAGG-ACCTGAAATTTCTCAGCAGACAA  949

seq1  TTTGTAGTTAAAGCATTTCACAGAGATGTGGAAAGGACA-GCCTT-GGTT  997
      ||||||||||||||||||||||||||||||| ||||||| ||||| ||||
seq2  TTTGTAGTTAAAGCATTTCACAGAGATGTGG-AAGGACAGGCCTTGGGTT  998

seq1  TTGCTTGTTTTCATT-ATTCAGGAAGGGGCTTAATGGGGGGGGGGG  1042
      ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTTCATTAATTCAGGAAGGGGCTTAATGGGGGGGGGGG  1044

seq1: chr11_18602359_18603208
seq2: B6Ng01-217O09.g_76_942 (reverse)

seq1  TTACTGATTTTGTTT--CATTCGTTTTTTT--AATGGTATCTCAGATGTC  46
      |||||||||||||||   ||||||||||||  |||| |||||||||||||
seq2  TTACTGATTTTGTTTTCAATTCGTTTTTTTTAAATGATATCTCAGATGTC  50

seq1  TGGGCTGGCTGGG-AACTC-ATGCTGT-AGCCCAGACAGGTACTG-AACT  92
      ||||||||||||| ||||| ||||||| |||||||||||| |||| ||||
seq2  TGGGCTGGCTGGGAAACTCAATGCTGTAAGCCCAGACAGGGACTGAAACT  100

seq1  TGTGATCCTTTCCATGACCTGAA--TTACAGGTGTG-TTCCACCAGGCTT  139
      |||||||||||||||||||||||  | ||||||||| |||||||||||||
seq2  TGTGATCCTTTCCATGACCTGAAATTAACAGGTGTGTTTCCACCAGGCTT  150

seq1  GTCTTCATCCC-AACTCTATTACAT-ACTTGCTGTGCTTCCATCGAACTG  187
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GTCTTCATCCCAAACTCTATTACATAACTTGCTGTGCTTCCATCGAACTG  200

seq1  GATAGTC-AAGAAGATGTAA--GAATCATCCTTCTAGTCATACTTGCTTG  234
      ||||||| ||||||||||||   |||||||||||||||||||||||||||
seq2  GATAGTCAAAGAAGATGTAAAGAAATCATCCTTCTAGTCATACTTGCTTG  250

seq1  GACTTGGACAAGTCTTTCTTGAGGGACTCCTCATCAACATTAAACTATCA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGACAAGTCTTTCTTGAGGGACTCCTCATCAACATTAAACTATCA  300

seq1  GTTCCAGGGCACAACATATATTTCTCATTGCAATACTTGGAGCTCATACC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGCACAACATATATTTCTCATTGCAATACTTGGAGCTCATACC  350

seq1  ACAATTCCTAATGCATGCTTAGAGGGTTGGGATTTCTTTGTTATTTTAAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTAATGCATGCTTAGAGGGTTGGGATTTCTTTGTTATTTTAAA  400

seq1  CAAGGGCTCACTCTGGCAGGCCTGGAGATCACTGTGCAGCAAAGGTTGGC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTCACTCTGGCAGGCCTGGAGATCACTGTGCAGCAAAGGTTGGC  450

seq1  CTCAAACACATCAACACTCCTGCTTTAGCCTTCAGTTACTAAGACGACCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACATCAACACTCCTGCTTTAGCCTTCAGTTACTAAGACGACCA  500

seq1  GTGTAACCCACCACCTCAAGAGAGTCACAGACATTCTTAACAAATTCATG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCCACCACCTCAAGAGAGTCACAGACATTCTTAACAAATTCATG  550

seq1  ACTGGAGAAGTTTGTAGAAAATGAGATTCACCGGTTTGTAAAATAAATAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAGTTTGTAGAAAATGAGATTCACCGGTTTGTAAAATAAATAA  600

seq1  GTATGGATTTTATTTCAGGAACATTATCCAGAGTTTTTCTCTATCTACCT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATTTTATTTCAGGAACATTATCCAGAGTTTTTCTCTATCTACCT  650

seq1  AAATAAGAAAGAATTAGTACTCCACAAAATTACTGTTAATAAGATAGAAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAGAATTAGTACTCCACAAAATTACTGTTAATAAGATAGAAG  700

seq1  GAAGATTCATTTTAGCTATATGTGGTTAGTATTATCCTGATACTAAAAAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCATTTTAGCTATATGTGGTTAGTATTATCCTGATACTAAAAAC  750

seq1  TGAGCAAAAATATCACAAGAAAAAGTATACAAACTGATAGTTCTTGTTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAAATATCACAAGAAAAAGTATACAAACTGATAGTTCTTGTTTT  800

seq1  GAGAATATTAGGGGAGGGGAACTCTCAATACAAGCAAATAAATACAGCAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTAGGGGAGGGGAACTCTCAATACAAGCAAATAAATACAGCAG  850

seq1  TA-TGTAGAAAGAATTC  850
      || ||||||||||||||
seq2  TAGTGTAGAAAGAATTC  867