BAC Information

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BAC

Clone NameB6Ng01-219E21
Chromosome11 (Build37)
Map Location 30,315,003 - 30,453,783
singlet/doubletdoublet
Overlap gene4930505A04Rik, Acyp2
Upstream geneA430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432
Downstream geneLOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219E21.bB6Ng01-219E21.g
ACCGA035182GA035183
length1,1771,176
definitionB6Ng01-219E21.b B6Ng01-219E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,452,605 - 30,453,783)(30,315,003 - 30,316,170)
sequence
gaattctgcaaatatcaaatgttaacttcaatttaaaaattagggacttg
cttcatggctttaagttgaattagtgttgcggtatatgtgacttcaaatc
ctgtgcatttagagtatcttttttccaataatgaacaagttcttgttttc
cctaagggcttagctgagcagaaggtgttgagagcttggatcttgtccag
atcttccatagaaattggcagagacatcacttattttgtctctcatctgt
tttattccactatcacaacatatacattaattctggcctccttgctctca
attaagtcatatataatattttgtgataaaaccttaaaatatcagaagga
aatggtatatctaaggctttatcaaaccacagtattgttctctgtatgag
taagagacattacatagaacagaatcgtgaaaatgactattgttagcatt
ttaacttcatacatattcacacctttaaaatgtatccattcatatttggt
aagtattctctatgacatgctaatgtctattaatgttagtcattaatttg
aatttgaaatttctggattgagattcaaaaatgaccatgtaggaatgaac
caggccagtactcaaagctacaacccaatttttttctttgattttacata
actttcaaatcatgcactctgaaaatgaatccctagctgtccttcaagtt
aagccaagatgacatggtgcctatacaagcagcacctcctaagtacagag
tagtaggcacaggcttagatattagaccattgcctctttctgaaagaaaa
agaaaacagcgcaagcaactttgggaaatggtcccatttactatgccctc
attacaaagaacagatttgcatcttagaagtagatctggaaggaacagat
acaggggaccagaagatcttcatcactaagctgagagatagcagtgaagc
ctaggaaccaggataaacaaagaccatgtaatggcagcatctgaccttta
ttgaatagtatgtttaacccagcattgttgattatctgtatagtgtgtat
gagatggagtcctgtcattaccttattttgagaaaagttcaagtgtatta
aaaattgttacacaaagtcatatacttcatgtttctaccttccgaatttg
gacttgcagccagaagccctcttaatt
gaattcatcccaaaacaaacaaatttttgagcaatactaaatgtaatgta
tataataatgataacaattaaagaagaagagctaatgaacttgggaggag
gttggaggcacagaaggatttgaaggagggggaagggatgaaaattatgt
aaatgcagtactcatataaaattttcaaaatgtaaattaaaataaaatta
aaacttatgttgtatttgtggaagggaattatttataggtccttgaagca
aattatgcagtgatgcccatatcttactatttgaactgttaaaatctctt
aatatatttttccatatcaataaagatgacaatgaaaaagaaagaaagaa
accaatgtttaaataggatctgctctatgctgccttactgtctaaactgt
actttttagcatttggttgtactaggtttgaactgccttcccagtgattc
tcaggaagtttttcagtttcttgagaagggtttacatttaaatgacagat
gtcaaatgtctgaaaatgcaggcaactcatgttatacacacacacacaca
cacacacacacacacacacacacacacacacacacactggacagtatggg
ctaggtaaaggattcttaatataataatgacagcctcttaaaatagcttt
aaaacatcttcagttcctacatcataaaacacatgaaactggtccttctg
ccctgtcctttctgttgggacagactgctagctagtctactctcctgaag
atacccatatcttgggccaccctagaagatctgctgcactcagagaactc
tggtaagaattctcctgagccccactgctgccactgggagcccagtggac
tcagtacccatcactctccaaaacccccgcctccaaattcccactcccat
tccacctggtccttcctgctgggggcagactgctagttaatctgctcccc
tgaagacaccatatcctgagccatcacaagagatatgctgcactcagagc
attttggggcaactaataccacagactgaaaggcatcacaggagatcctg
ctacacacagttaatcatcctgtctgctcctctgaagacaccacaacttg
aaaggactccctaaggaggtcctctgtacacagggctactgggcaacaga
aaccacagtctggaaacttccgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_30452605_30453783
seq2: B6Ng01-219E21.b_45_1221 (reverse)

seq1  AATTAAGAGGGGCTTCTGCTTGCAGGTTCCATATCTGAAAGTTAG-AACA  49
      |||||||| |||||||||  |||| | |||| ||  | ||| ||| ||||
seq2  AATTAAGA-GGGCTTCTGGCTGCAAG-TCCAAATTCGGAAGGTAGAAACA  48

seq1  TG-AGTATATGACCTTGTGT-ACA--TTTTTATACACCTTGAACCTTTTT  95
      || |||||||||| |||||| |||  |||| ||||| |||||||  ||||
seq2  TGAAGTATATGACTTTGTGTAACAATTTTTAATACA-CTTGAAC--TTTT  95

seq1  CTTCAAAATAAGGGTAATGACA-GACTCCATCTCATACACAACTATACAG  144
      | ||||||||| |||||||||| ||||||||||||||||| |||||||||
seq2  C-TCAAAATAA-GGTAATGACAGGACTCCATCTCATACAC-ACTATACAG  142

seq1  ATAATCAACAATGCTGGGTTAAACATACTATTCAATAAAGGTCAGATGCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAACAATGCTGGGTTAAACATACTATTCAATAAAGGTCAGATGCT  192

seq1  GCCATTACATGGTCTTTGTTTATCCTGGTTCCTAGGCTTCACTGCTATCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTACATGGTCTTTGTTTATCCTGGTTCCTAGGCTTCACTGCTATCT  242

seq1  CTCAGCTTAGTGATGAAGATCTTCTGGTCCCCTGTATCTGTTCCTTCCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTAGTGATGAAGATCTTCTGGTCCCCTGTATCTGTTCCTTCCAG  292

seq1  ATCTACTTCTAAGATGCAAATCTGTTCTTTGTAATGAGGGCATAGTAAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCTAAGATGCAAATCTGTTCTTTGTAATGAGGGCATAGTAAAT  342

seq1  GGGACCATTTCCCAAAGTTGCTTGCGCTGTTTTCTTTTTCTTTCAGAAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCATTTCCCAAAGTTGCTTGCGCTGTTTTCTTTTTCTTTCAGAAAG  392

seq1  AGGCAATGGTCTAATATCTAAGCCTGTGCCTACTACTCTGTACTTAGGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGGTCTAATATCTAAGCCTGTGCCTACTACTCTGTACTTAGGAG  442

seq1  GTGCTGCTTGTATAGGCACCATGTCATCTTGGCTTAACTTGAAGGACAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTGTATAGGCACCATGTCATCTTGGCTTAACTTGAAGGACAGC  492

seq1  TAGGGATTCATTTTCAGAGTGCATGATTTGAAAGTTATGTAAAATCAAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTCATTTTCAGAGTGCATGATTTGAAAGTTATGTAAAATCAAAG  542

seq1  AAAAAAATTGGGTTGTAGCTTTGAGTACTGGCCTGGTTCATTCCTACATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGGGTTGTAGCTTTGAGTACTGGCCTGGTTCATTCCTACATG  592

seq1  GTCATTTTTGAATCTCAATCCAGAAATTTCAAATTCAAATTAATGACTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTGAATCTCAATCCAGAAATTTCAAATTCAAATTAATGACTAA  642

seq1  CATTAATAGACATTAGCATGTCATAGAGAATACTTACCAAATATGAATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAGACATTAGCATGTCATAGAGAATACTTACCAAATATGAATGG  692

seq1  ATACATTTTAAAGGTGTGAATATGTATGAAGTTAAAATGCTAACAATAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTAAAGGTGTGAATATGTATGAAGTTAAAATGCTAACAATAGT  742

seq1  CATTTTCACGATTCTGTTCTATGTAATGTCTCTTACTCATACAGAGAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCACGATTCTGTTCTATGTAATGTCTCTTACTCATACAGAGAACA  792

seq1  ATACTGTGGTTTGATAAAGCCTTAGATATACCATTTCCTTCTGATATTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGGTTTGATAAAGCCTTAGATATACCATTTCCTTCTGATATTTT  842

seq1  AAGGTTTTATCACAAAATATTATATATGACTTAATTGAGAGCAAGGAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTATCACAAAATATTATATATGACTTAATTGAGAGCAAGGAGGC  892

seq1  CAGAATTAATGTATATGTTGTGATAGTGGAATAAAACAGATGAGAGACAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAATGTATATGTTGTGATAGTGGAATAAAACAGATGAGAGACAA  942

seq1  AATAAGTGATGTCTCTGCCAATTTCTATGGAAGATCTGGACAAGATCCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGATGTCTCTGCCAATTTCTATGGAAGATCTGGACAAGATCCAA  992

seq1  GCTCTCAACACCTTCTGCTCAGCTAAGCCCTTAGGGAAAACAAGAACTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAACACCTTCTGCTCAGCTAAGCCCTTAGGGAAAACAAGAACTTG  1042

seq1  TTCATTATTGGAAAAAAGATACTCTAAATGCACAGGATTTGAAGTCACAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTGGAAAAAAGATACTCTAAATGCACAGGATTTGAAGTCACAT  1092

seq1  ATACCGCAACACTAATTCAACTTAAAGCCATGAAGCAAGTCCCTAATTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGCAACACTAATTCAACTTAAAGCCATGAAGCAAGTCCCTAATTTT  1142

seq1  TAAATTGAAGTTAACATTTGATATTTGCAGAATTC  1179
      |||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAGTTAACATTTGATATTTGCAGAATTC  1177

seq1: chr11_30315003_30316170
seq2: B6Ng01-219E21.g_65_1240

seq1  GAATTCATCCCAAAACAAACAAATTTTTGAGCAATACTAAATGTAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCAAAACAAACAAATTTTTGAGCAATACTAAATGTAATGTA  50

seq1  TATAATAATGATAACAATTAAAGAAGAAGAGCTAATGAACTTGGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATGATAACAATTAAAGAAGAAGAGCTAATGAACTTGGGAGGAG  100

seq1  GTTGGAGGCACAGAAGGATTTGAAGGAGGGGGAAGGGATGAAAATTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGCACAGAAGGATTTGAAGGAGGGGGAAGGGATGAAAATTATGT  150

seq1  AAATGCAGTACTCATATAAAATTTTCAAAATGTAAATTAAAATAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTACTCATATAAAATTTTCAAAATGTAAATTAAAATAAAATTA  200

seq1  AAACTTATGTTGTATTTGTGGAAGGGAATTATTTATAGGTCCTTGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATGTTGTATTTGTGGAAGGGAATTATTTATAGGTCCTTGAAGCA  250

seq1  AATTATGCAGTGATGCCCATATCTTACTATTTGAACTGTTAAAATCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCAGTGATGCCCATATCTTACTATTTGAACTGTTAAAATCTCTT  300

seq1  AATATATTTTTCCATATCAATAAAGATGACAATGAAAAAGAAAGAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTTCCATATCAATAAAGATGACAATGAAAAAGAAAGAAAGAA  350

seq1  ACCAATGTTTAAATAGGATCTGCTCTATGCTGCCTTACTGTCTAAACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTTTAAATAGGATCTGCTCTATGCTGCCTTACTGTCTAAACTGT  400

seq1  ACTTTTTAGCATTTGGTTGTACTAGGTTTGAACTGCCTTCCCAGTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAGCATTTGGTTGTACTAGGTTTGAACTGCCTTCCCAGTGATTC  450

seq1  TCAGGAAGTTTTTCAGTTTCTTGAGAAGGGTTTACATTTAAATGACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGTTTTTCAGTTTCTTGAGAAGGGTTTACATTTAAATGACAGAT  500

seq1  GTCAAATGTCTGAAAATGCAGGCAACTCATGTTATACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGTCTGAAAATGCAGGCAACTCATGTTATACACACACACACACA  550

seq1  CACACACACACACACACACACACACACACACACACACTGGACAGTATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACTGGACAGTATGGG  600

seq1  CTAGGTAAAGGATTCTTAATATAATAATGACAGCCTCTTAAAATAGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAAAGGATTCTTAATATAATAATGACAGCCTCTTAAAATAGCTTT  650

seq1  AAAACATCTTCAGTTCCTACATCATAAAACACATG-AACTGGTCCTTCTG  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAACATCTTCAGTTCCTACATCATAAAACACATGAAACTGGTCCTTCTG  700

seq1  CCCTGTCCTTTCTGTTGGGACAGACTGCTAGCTAGTCTACTCTCCTGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTTTCTGTTGGGACAGACTGCTAGCTAGTCTACTCTCCTGAAG  750

seq1  ATA-CCATATCTTGGGCCACCCTAGAAGATCTGCTGCACTCAGAGAACTC  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATATCTTGGGCCACCCTAGAAGATCTGCTGCACTCAGAGAACTC  800

seq1  TGGTAAGAATTCTCCTGAAGCCCCACTGCTGCCACTGGGAGCCCAGTGGA  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGTAAGAATTCTCCTG-AGCCCCACTGCTGCCACTGGGAGCCCAGTGGA  849

seq1  CTCAGTACCCATCACTCTCCAAAACCCCCGCCTCCCAAATCCCACTCCCA  898
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  CTCAGTACCCATCACTCTCCAAAACCCCCGCCTCCAAATTCCCACTCCCA  899

seq1  TTCCACCTGGTCCTTCCTGCT-GGGGCAGACTGCTAGTTATTCTGCTCCC  947
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  TTCCACCTGGTCCTTCCTGCTGGGGGCAGACTGCTAGTTAATCTGCTCCC  949

seq1  CTGAAGACACCATATCCTGAGCCATCACAGAAGATATGCTGCACTCAGAG  997
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CTGAAGACACCATATCCTGAGCCATCACAAGAGATATGCTGCACTCAGAG  999

seq1  CATTT--GGGCAACTAATACCACAGACTG-AAGGCATCACAGGAGAT-CT  1043
      |||||  |||||||||||||||||||||| ||||||||||||||||| ||
seq2  CATTTTGGGGCAACTAATACCACAGACTGAAAGGCATCACAGGAGATCCT  1049

seq1  GCTACACACAGGTTAATCATCTTGTCTGCTCCTCTGAAGACACCACAACT  1093
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  GCTACACACA-GTTAATCATCCTGTCTGCTCCTCTGAAGACACCACAACT  1098

seq1  TG-AAGGACT--CTTAGGAGGTCCTCTGTACACAGGGCTACTGGGCAACA  1140
      || |||||||  || |||||||||||||||||||||||||||||||||||
seq2  TGAAAGGACTCCCTAAGGAGGTCCTCTGTACACAGGGCTACTGGGCAACA  1148

seq1  GACACCACAGTCTGAAGACTTCCCTGGG  1168
      || ||||||||||| | |||||| ||||
seq2  GAAACCACAGTCTGGAAACTTCCGTGGG  1176