BAC Information

Click to search

BAC

Clone NameB6Ng01-219O06
Chromosome11 (Build37)
Map Location 3,800,692 - 4,005,918
singlet/doubletdoublet
Overlap geneDusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik
Downstream geneLOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219O06.bB6Ng01-219O06.g
ACCGA035594GA035595
length318975
definitionB6Ng01-219O06.b B6Ng01-219O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,800,692 - 3,801,009)(4,004,954 - 4,005,918)
sequence
cagcacaattactgtttgtcgtaaagattgccagctagaagtcacacttt
ttatttatagaaattttgtgttaaaataatagtgaatgtggccttactcc
taaacagtttctgggaattaaaaaaataagacttttttttaaaaaaaaat
aaataaaaatgtcccctgtaagcctgtgacctatgactttccttacctta
gctgtgaacctatccagtgcagaaactagaaactagccatgatcacatta
gactaagttccaaagccactggaaactctgtgtgtgtgtgtgtgtgtgtg
tgtgtatgtgtgtgtgtg
gaattcaaggccagccttggttactgagaccctgttacaaagagaggggc
ttaggcgccagagtgccagtgttggctgtggaggtatttcctagagatgg
gaaagcctctgccttaacccagctctcccgctcagccgggagaagataga
aagtcagagcaatcagtttttatggtttctggttttactgctgctaccac
ccaccaagtgctgaggtggtttggttccctggcagcagagctatgtagga
ggttcagtctgttctcctacccacacttaaaattctttcaaccaaatgtg
ccttaggcacattgggaagaaccgagatccccaacagaggagagataaaa
gttacttccgggtggtcactggagtttagcagtgtcaatgaaatcacccc
aaggccacagatacccgagggtgggcagacacaggacagtcagagttaca
gtcatctgtgcagaggacgtgaggctagtccccggcctggagctgctgac
tgatagtcagctgatagtctatataattagagtggtttgtggtattaagg
tattgtgccaggctagtctttcttaggaaaatagttctcagcattgctgc
tccattcaggagaggatttggttcgaaaaacaacaaaaaagcagccaatc
tgctcaaaacaagaacacaagtgacgtgggcagagtacagacaagtaagc
ccatttaagaggtcactctccagtgaggtactcactcagtaaatcatgac
tcagcccagtgaagtgtgggagaagaggggagatcagcatcactgggtga
gaacccgtggattcaagacttctggtccggtcgtgtgctccttctgcatg
gaaatacagttcccacctttgtccatttggctttttattttgaatgtttg
tatccttttttgggagagggtaataatactaattttacaaagccctctga
gattatcctcaattcattctgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3800692_3801009
seq2: B6Ng01-219O06.b_52_369

seq1  CAGCACAATTACTGTTTGTCGTAAAGATTGCCAGCTAGAAGTCACACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAATTACTGTTTGTCGTAAAGATTGCCAGCTAGAAGTCACACTTT  50

seq1  TTATTTATAGAAATTTTGTGTTAAAATAATAGTGAATGTGGCCTTACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAGAAATTTTGTGTTAAAATAATAGTGAATGTGGCCTTACTCC  100

seq1  TAAACAGTTTCTGGGAATTAAAAAAATAAGACTTTTTTTTAAAAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTTCTGGGAATTAAAAAAATAAGACTTTTTTTTAAAAAAAAAT  150

seq1  AAATAAAAATGTCCCCTGTAAGCCTGTGACCTATGACTTTCCTTACCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATGTCCCCTGTAAGCCTGTGACCTATGACTTTCCTTACCTTA  200

seq1  GCTGTGAACCTATCCAGTGCAGAAACTAGAAACTAGCCATGATCACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAACCTATCCAGTGCAGAAACTAGAAACTAGCCATGATCACATTA  250

seq1  GACTAAGTTCCAAAGCCACTGGAAACTCTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTTCCAAAGCCACTGGAAACTCTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTATGTGTGTGTGTG  318
      ||||||||||||||||||
seq2  TGTGTATGTGTGTGTGTG  318

seq1: chr11_4004954_4005918
seq2: B6Ng01-219O06.g_68_1041 (reverse)

seq1  CAGCAGAATGAATTGAGGAT-ATCTAAGAGGGCTTTGT-AAATTAGTA-T  47
      |||||||||||||||||||| |||| |||||||||||| ||||||||| |
seq2  CAGCAGAATGAATTGAGGATAATCTCAGAGGGCTTTGTAAAATTAGTATT  50

seq1  ATTA-CCTCTCCCAAAAAAGGATACAAACA-TCAAAAT-AAAAGCCAAAT  94
      |||| ||||||||||||||||||||||||| ||||||| |||||||||||
seq2  ATTACCCTCTCCCAAAAAAGGATACAAACATTCAAAATAAAAAGCCAAAT  100

seq1  GGACAAAGGTGGGAACTGTA-TTCCATGCAG-AGGAGCACACGGCCGGAC  142
      |||||||||||||||||||| |||||||||| ||||||||||| ||||||
seq2  GGACAAAGGTGGGAACTGTATTTCCATGCAGAAGGAGCACACGACCGGAC  150

seq1  CAGAAGTCTTGAATCCACGGGTTCTCACCCAGTGATGCTGATCTCCCCTC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTTGAATCCACGGGTTCTCACCCAGTGATGCTGATCTCCCCTC  200

seq1  TTCTCCCACACTTCACTGGGCTGAGTCATGATTTACTGAGTGAGTACCTC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCACACTTCACTGGGCTGAGTCATGATTTACTGAGTGAGTACCTC  250

seq1  ACTGGAGAGTGACCTCTTAAATGGGCTTACTTGTCTGTACTCTGCCCACG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGTGACCTCTTAAATGGGCTTACTTGTCTGTACTCTGCCCACG  300

seq1  TCACTTGTGTTCTTGTTTTGAGCAGATTGGCTGC-TTTTTGTTGTTTTTC  341
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCACTTGTGTTCTTGTTTTGAGCAGATTGGCTGCTTTTTTGTTGTTTTTC  350

seq1  GAACCAAATCCTCTCCTGAATGGAGCAGCAATGCTGAGAACTATTTTCCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAATCCTCTCCTGAATGGAGCAGCAATGCTGAGAACTATTTTCCT  400

seq1  AAGAAAGACTAGCCTGGCACAATACCTTAATACCACAAACCACTCTAATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGACTAGCCTGGCACAATACCTTAATACCACAAACCACTCTAATT  450

seq1  ATATAGACTATCAGCTGACTATCAGTCAGCAGCTCCAGGCCGGGGACTAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACTATCAGCTGACTATCAGTCAGCAGCTCCAGGCCGGGGACTAG  500

seq1  CCTCACGTCCTCTGCACAGATGACTGTAACTCTGACTGTCCTGTGTCTGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACGTCCTCTGCACAGATGACTGTAACTCTGACTGTCCTGTGTCTGC  550

seq1  CCACCCTCGGGTATCTGTGGCCTTGGGGTGATTTCATTGACACTGCTAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCGGGTATCTGTGGCCTTGGGGTGATTTCATTGACACTGCTAAA  600

seq1  CTCCAGTGACCACCCGGAAGTAACTTTTATCTCTCCTCTGTTGGGGATCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGACCACCCGGAAGTAACTTTTATCTCTCCTCTGTTGGGGATCT  650

seq1  CGGTTCTTCCCAATGTGCCTAAGGCACATTTGGTTGAAAGAATTTTAAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCTTCCCAATGTGCCTAAGGCACATTTGGTTGAAAGAATTTTAAGT  700

seq1  GTGGGTAGGAGAACAGACTGAACCTCCTACATAGCTCTGCTGCCAGGGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGGAGAACAGACTGAACCTCCTACATAGCTCTGCTGCCAGGGAA  750

seq1  CCAAACCACCTCAGCACTTGGTGGGTGGTAGCAGCAGTAAAACCAGAAAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCACCTCAGCACTTGGTGGGTGGTAGCAGCAGTAAAACCAGAAAC  800

seq1  CATAAAAACTGATTGCTCTGACTTTCTATCTTCTCCCGGCTGAGCGGGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAACTGATTGCTCTGACTTTCTATCTTCTCCCGGCTGAGCGGGAG  850

seq1  AGCTGGGTTAAGGCAGAGGCTTTCCCATCTCTAGGAAATACCTCCACAGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTTAAGGCAGAGGCTTTCCCATCTCTAGGAAATACCTCCACAGC  900

seq1  CAACACTGGCACTCTGGCGCCTAAGCCCCTCTCTTTGTAACAGGGTCTCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGCACTCTGGCGCCTAAGCCCCTCTCTTTGTAACAGGGTCTCA  950

seq1  GTAACCAAGGCTGGCCTTGAATTC  965
      ||||||||||||||||||||||||
seq2  GTAACCAAGGCTGGCCTTGAATTC  974