BAC Information

Click to search

BAC

Clone NameB6Ng01-220F03
Chromosome11 (Build37)
Map Location 115,224,811 - 115,225,911
singlet/doubletsinglet
Overlap geneC630004H02Rik
Upstream gene4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3
Downstream geneCdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220F03.bB6Ng01-220F03.g
ACCGA035907GA035908
length9121,082
definitionB6Ng01-220F03.b B6Ng01-220F03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcagggggtattaaaccccttctggcctctgtggacatctgtattcacgt
gcactcgtacacacacacacacacacacacactattaaaatgaaaggtag
tgtcttcaggagagttttgggggctagctttgagaaagacttgctctgaa
gcctaggtttgcctggaatagtgtcccaccctggcctcctgagtgctggg
ttatatataggcttgccctaaaacaccaatataaaagtctgctttcaccg
ctaggcatggctacatccctgtctcaaagacaaaacaagcggggtagaga
gatggctcagtgtctaagaatacttcctgctctccttgaggacacaagtt
ctgttcccaggacccacaccaggcagctctgaaccactggtaactccagc
tccagggaatctaaaaacctggcctccgtaggaccccatggtgaacacgc
agcattcacacacagatatatggtgtacacacagcactcacacacagata
ggcctcatatatgaatagaaacaaacagacaaaccccacaaggactggag
agacggctcggcacatcctgctcttctgcctgtaactacagcttcatagg
atatgacgtccctctttggccttcatcagcacctgtgtccacatgaacct
acccacccctcctcctacgccacatacacacatacattaaataaaaattt
tagaaatcctaaagataaacaaaacaaaaatataaattttagagtttggg
aaatggctcaattgttaaaagtactcggctaagtttgatcctagcaccaa
tataaataagccagacataattatgtgggtctgtaacatcttcactgtgg
gggtagagacaggaatgtatatgtgtatgtgtgtgtgtgtgtgtgcgagt
acgcacaatcat
gaattctccgctgggatggatagtttgatgtcaatttgatgcaggctggg
gtcatttgcgaagagggaacctcaattaagaaaatgcctccagctgggcg
gtggtggcgctcgcctttaatcccggctcttgggaggcagaggcaggtgg
agctccgagtttgaggctagcctgcactacatagtcacttccaagatagc
cagggctacacagagaaaccctgtctcaatcaatcaatcaatcaatcaat
gtgcctccataagatccagctgtgaggcattttcttaattagtaattgac
ggggagggcccagcctagtgtggatggagtcatccctgagctggtggtcc
tgagttctataagaaagcaggctgagcaagccatggggagcaggtcagta
agcagccccctccatggcctctacaccagctgctgcctccaggttcctgc
cctgttggagttcctgccctgaccccaagttgctttggtcagggtgtacc
attacaccacacaggcatgctctcctttgggaacctccagccccaacttc
tacaccccacattcctgactcaggtctagatccactcacctcacagccca
gcagcccagcattggccctgctctcaaagctgaggcagatgaagctgagg
tcctgacaaggctgagtgccagggggctgcccaaacccaaggctggggct
gcaggcttcaccaaagtgcccaccctccaccccattctggggagccccag
gataacttgtggctgcaccctcagtcccagaactggtagagcaagtcagc
caaaggtaaacaaaggctaaaggagaggccctggagctggggtttgctgg
acctcagcctcaccagtcctggtggcctggagccagaacgcagtggaaag
gacatttcagaggaaaggcctgtgagatcctcctcatcagagcactctga
aagcctctatactcagctcactctcaggagtcagcatcccttaagggcga
gccccgctgaatacaaatgagctgacactgactagtcattagaacaccat
cacctcggactgaattcacgaggacataagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115224811_115225911
seq2: B6Ng01-220F03.g_66_1147

seq1  GAATTCTCCGCTGGGATGGATAGTTTGATGTCAATTTGATGCAGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCTGGGATGGATAGTTTGATGTCAATTTGATGCAGGCTGGG  50

seq1  GTCATTTGCGAAGAGGGAACCTCAATTAAGAAAATGCCTCCAGCTGGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGCGAAGAGGGAACCTCAATTAAGAAAATGCCTCCAGCTGGGCG  100

seq1  GTGGTGGCGCTCGCCTTTAATCCCGGCTCTTGGGAGGCAGAGGCAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCGCTCGCCTTTAATCCCGGCTCTTGGGAGGCAGAGGCAGGTGG  150

seq1  AGCTCCGAGTTTGAGGCTAGCCTGCACTACATAGTCACTTCCAAGATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGAGTTTGAGGCTAGCCTGCACTACATAGTCACTTCCAAGATAGC  200

seq1  CAGGGCTACACAGAGAAACCCTGTCTCAATCAATCAATCAATCAATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACACAGAGAAACCCTGTCTCAATCAATCAATCAATCAATCAAT  250

seq1  GTGCCTCCATAAGATCCAGCTGTGAGGCATTTTCTTAATTAGTAATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCATAAGATCCAGCTGTGAGGCATTTTCTTAATTAGTAATTGAC  300

seq1  GGGGAGGGCCCAGCCTAGTGTGGATGGAGTCATCCCTGAGCTGGTGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGCCCAGCCTAGTGTGGATGGAGTCATCCCTGAGCTGGTGGTCC  350

seq1  TGAGTTCTATAAGAAAGCAGGCTGAGCAAGCCATGGGGAGCAGGTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTATAAGAAAGCAGGCTGAGCAAGCCATGGGGAGCAGGTCAGTA  400

seq1  AGCAGCCCCCTCCATGGCCTCTACACCAGCTGCTGCCTCCAGGTTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCCCTCCATGGCCTCTACACCAGCTGCTGCCTCCAGGTTCCTGC  450

seq1  CCTGTTGGAGTTCCTGCCCTGACCCCAAGTTGCTTTGGTCAGGGTGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGAGTTCCTGCCCTGACCCCAAGTTGCTTTGGTCAGGGTGTACC  500

seq1  ATTACACCACACAGGCATGCTCTCCTTTGGGAACCTCCAGCCCCAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACCACACAGGCATGCTCTCCTTTGGGAACCTCCAGCCCCAACTTC  550

seq1  TACACCCCACATTCCTGACTCAGGTCTAGATCCACTCACCTCACAGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCCACATTCCTGACTCAGGTCTAGATCCACTCACCTCACAGCCCA  600

seq1  GCAGCCCAGCATTGGCCCTGCTCTCAAAGCTGAGGCAGATGAAGCTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCAGCATTGGCCCTGCTCTCAAAGCTGAGGCAGATGAAGCTGAGG  650

seq1  TCCTGACAAGGCTGAGTGCCAGGGGGCTGCCCAAACCCAAGGCTGGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAAGGCTGAGTGCCAGGGGGCTGCCCAAACCCAAGGCTGGGGCT  700

seq1  GCAGGCTTCACCAAAGTGCCCACCCTCCACCCCATTCTGGGGAGCCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTCACCAAAGTGCCCACCCTCCACCCCATTCTGGGGAGCCCCAG  750

seq1  GATAACTTGTGGCTGCACCCTCAGTCCCAGAACTGGTAGAGCAAGTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTGTGGCTGCACCCTCAGTCCCAGAACTGGTAGAGCAAGTCAGC  800

seq1  CAAAGGTAAACAAAGGCTAAAGGAGAGGCCCTGGAGCTGGGGTTTGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAACAAAGGCTAAAGGAGAGGCCCTGGAGCTGGGGTTTGCTGG  850

seq1  ACCTCAGCCTCACCAGTCCTGGTGGCCTGGAGCCAGAACGCAGTGGGAAA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCTCAGCCTCACCAGTCCTGGTGGCCTGGAGCCAGAACGCAGT-GGAAA  899

seq1  GGACATTTCAGAGGAAAGGCCTGTGGAGATCCTCCTCATCAGGAGCACCT  950
      |||||||||||||||||||||||| |||||||||||||||| ||||| ||
seq2  GGACATTTCAGAGGAAAGGCCTGT-GAGATCCTCCTCATCA-GAGCA-CT  946

seq1  CTGAAAGCCTCTAATACTCAGCTCACCTCTCAGGGAGTCAGCATCCCTTA  1000
      |||||||||||| |||||||||||| |||||| |||||||||||||||||
seq2  CTGAAAGCCTCT-ATACTCAGCTCA-CTCTCA-GGAGTCAGCATCCCTTA  993

seq1  AAGGGGCCGAAGCCCCCGCTGAATACAAATGGAGCTGACCACTGACCTAG  1050
      |   || |||   ||||||||||||||||| ||||||| |||||| ||||
seq2  A---GGGCGA--GCCCCGCTGAATACAAAT-GAGCTGA-CACTGA-CTAG  1035

seq1  TTCATTAGACAACCATCACCTCGGAACTGAAATCCAAACGA-GACATAAG  1099
       ||||||||  ||||||||||||| |||||| ||   |||| ||||||||
seq2  -TCATTAGAACACCATCACCTCGG-ACTGAATTC---ACGAGGACATAAG  1080

seq1  AG  1101
      ||
seq2  AG  1082