BAC Information

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BAC

Clone NameB6Ng01-220K12
Chromosome11 (Build37)
Map Location 37,270,779 - 37,417,988
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K12.bB6Ng01-220K12.g
ACCGA036159GA036160
length1,122929
definitionB6Ng01-220K12.b B6Ng01-220K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,416,868 - 37,417,988)(37,270,779 - 37,271,692)
sequence
gaattctttctagcttctcacctcagtgcctccttgggatggaggtgagg
ttccaggaaagcctaggacacttccccagtgctgagttgcctgggatgga
ttcctgaaggagtaccttccttttcgtattttgtgtgtcgcccccacatc
tcagaaagggtttcttcaaatctgaatctttaacttcactccatctcagg
tactggaagaaatacccaactgtttcccctaggtccagaagtttgttctg
tcattctcagtatcaaggggattctttgttactttgccttaataaatggg
ccttacctggtagctgtgttagaattctctgtggcatgataacaagttta
aaatcagacaatgttctagtagaggccaggtgttcaaagtatagtaaaca
gctccctaaagattagaaaatgaatatttaactagatgactacatttgat
ttccttcattcattttttattatttcagtgaaaacctttttgatggaaat
cacattgacagagttttaatatcttatggtaaatgaaagctgtcactcca
gtggggttagtatttctttatagtgacatttggtaaactctggtggccag
taatatcttttttcatagttacaacttaggtaattctatgcagactgtac
atcaaggaagacaatttgtgctaagaggttgataattataatgaaactag
ttatattaattaggttctgttcataacgagcttcatgattgctttttaag
aaggaggagagaaacctaagctgtacaggctttgtgtgcatagctatatt
tcttaaattattagaggctaacggagccaccatatccatgaaatgagaat
ttcatgcagtgtattttaggacccttctcaaaagctagactcaaaatgca
aaactctgtggaggtgatagtcattaaaaactggtggttggtcaattaac
ctgagctctgagagactgagtcacaaaccaaagaacatacactggctgaa
cagaggtcccccagcactaactgaagctggagctgtcctattagctaata
gactgactggtggaatcagtcccagtagggctgccttatctgttgatagt
gggggagtatggagtcttaatg

gaattcatcttcctctaagagccaacatctgtgacttaccaataacattt
tatttgtcatgttggacctaaataaactctgtgatcaagtaagatgtgtt
gctctgtgatcctctgacaggcttttgtggtgtacttaagactcatgttc
caagcaccctgtttaattagattggggggggggattttctctaagtggtg
actagaggagactagctaagaggatctaaccctctttactgcttatatgc
ttttctaagatcatcttaccttatatgttaaaacacagtgtgttttttaa
ataaaactatactatattaaatattgtaaatctgttaacaatgggcattt
tagaatgaacatgatttattttcttatctcaaaacaactagctattcgcc
attggcaaaatatcatttctaatttaccaggagcctcattgccagtaagg
tgttataccacaacatccacaaagctcctacttattggtggcagaatctt
ttgtacacaggattaccctacactttccacttgatattctcagaagaagc
tgtcaattttcctcactacacagcttttgttatcactggtcatatgcagt
cttattttgctttgatttcttagtttttctgcttcatctcatccactcta
ttcattatcttgagtctttctccttctttcaaaaggtaaccacactaaga
tgcttatctttttgtttggttgtcagggtcaaaacagaaaaatacagact
ttagaaactaaattttacagctgaaacacactttgagcgacctccagtgt
gtcttaaatattgtgtgggatggttctactaaacacatagcatatatttt
ggtgcccaaaaaatttattcattcttttgaaatttaaatttgttatcaag
taggagtttgttcgcttaggctaaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37416868_37417988
seq2: B6Ng01-220K12.b_45_1166 (reverse)

seq1  CATT-AGACT-CATACTCCCCAACTATCACCAGATAAGGCAGCCCTACTG  48
      |||| ||||| |||||||||| ||||||| ||||||||||||||||||||
seq2  CATTAAGACTCCATACTCCCCCACTATCAACAGATAAGGCAGCCCTACTG  50

seq1  GGGAACTGATTCCA-CAGTCAGTCTA-TAGCTATAGGGACAGCTCCAGCT  96
      ||  |||||||||| ||||||||||| ||||||   ||||||||||||||
seq2  GG--ACTGATTCCACCAGTCAGTCTATTAGCTAATAGGACAGCTCCAGCT  98

seq1  TCAGTTAGTTGCTGGGGGACCTCTGTTCAGCCAGTGTATGTTCTTTGGTT  146
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAG-TGCTGGGGGACCTCTGTTCAGCCAGTGTATGTTCTTTGGTT  147

seq1  TGTGACTCAGTCTCTCAGAGCTCAGGTTAATTGACCAACCACCAGTTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCAGTCTCTCAGAGCTCAGGTTAATTGACCAACCACCAGTTTTT  197

seq1  AATGACTATCACCTCCACAGAGTTTTGCATTTTGAGTCTAGCTTTTGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTATCACCTCCACAGAGTTTTGCATTTTGAGTCTAGCTTTTGAGA  247

seq1  AGGGTCCTAAAATACACTGCATGAAATTCTCATTTCATGGATATGGTGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAAAATACACTGCATGAAATTCTCATTTCATGGATATGGTGGC  297

seq1  TCCGTTAGCCTCTAATAATTTAAGAAATATAGCTATGCACACAAAGCCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTAGCCTCTAATAATTTAAGAAATATAGCTATGCACACAAAGCCTG  347

seq1  TACAGCTTAGGTTTCTCTCCTCCTTCTTAAAAAGCAATCATGAAGCTCGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTAGGTTTCTCTCCTCCTTCTTAAAAAGCAATCATGAAGCTCGT  397

seq1  TATGAACAGAACCTAATTAATATAACTAGTTTCATTATAATTATCAACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACAGAACCTAATTAATATAACTAGTTTCATTATAATTATCAACCT  447

seq1  CTTAGCACAAATTGTCTTCCTTGATGTACAGTCTGCATAGAATTACCTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACAAATTGTCTTCCTTGATGTACAGTCTGCATAGAATTACCTAA  497

seq1  GTTGTAACTATGAAAAAAGATATTACTGGCCACCAGAGTTTACCAAATGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAACTATGAAAAAAGATATTACTGGCCACCAGAGTTTACCAAATGT  547

seq1  CACTATAAAGAAATACTAACCCCACTGGAGTGACAGCTTTCATTTACCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAAGAAATACTAACCCCACTGGAGTGACAGCTTTCATTTACCAT  597

seq1  AAGATATTAAAACTCTGTCAATGTGATTTCCATCAAAAAGGTTTTCACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAAAACTCTGTCAATGTGATTTCCATCAAAAAGGTTTTCACTG  647

seq1  AAATAATAAAAAATGAATGAAGGAAATCAAATGTAGTCATCTAGTTAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAAAAATGAATGAAGGAAATCAAATGTAGTCATCTAGTTAAAT  697

seq1  ATTCATTTTCTAATCTTTAGGGAGCTGTTTACTATACTTTGAACACCTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTCTAATCTTTAGGGAGCTGTTTACTATACTTTGAACACCTGG  747

seq1  CCTCTACTAGAACATTGTCTGATTTTAAACTTGTTATCATGCCACAGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTAGAACATTGTCTGATTTTAAACTTGTTATCATGCCACAGAGA  797

seq1  ATTCTAACACAGCTACCAGGTAAGGCCCATTTATTAAGGCAAAGTAACAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACACAGCTACCAGGTAAGGCCCATTTATTAAGGCAAAGTAACAA  847

seq1  AGAATCCCCTTGATACTGAGAATGACAGAACAAACTTCTGGACCTAGGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCCTTGATACTGAGAATGACAGAACAAACTTCTGGACCTAGGGG  897

seq1  AAACAGTTGGGTATTTCTTCCAGTACCTGAGATGGAGTGAAGTTAAAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTGGGTATTTCTTCCAGTACCTGAGATGGAGTGAAGTTAAAGAT  947

seq1  TCAGATTTGAAGAAACCCTTTCTGAGATGTGGGGGCGACACACAAAATAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTGAAGAAACCCTTTCTGAGATGTGGGGGCGACACACAAAATAC  997

seq1  GAAAAGGAAGGTACTCCTTCAGGAATCCATCCCAGGCAACTCAGCACTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAGGTACTCCTTCAGGAATCCATCCCAGGCAACTCAGCACTGG  1047

seq1  GGAAGTGTCCTAGGCTTTCCTGGAACCTCACCTCCATCCCAAGGAGGCAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTCCTAGGCTTTCCTGGAACCTCACCTCCATCCCAAGGAGGCAC  1097

seq1  TGAGGTGAGAAGCTAGAAAGAATTC  1121
      |||||||||||||||||||||||||
seq2  TGAGGTGAGAAGCTAGAAAGAATTC  1122


seq1: chr11_37270779_37271692
seq2: B6Ng01-220K12.g_65_993

seq1  GAATTCATCTTCCTCTAAGAGCCAACATCTGTGACTTACCAATAACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCCTCTAAGAGCCAACATCTGTGACTTACCAATAACATTT  50

seq1  TATTTGTCATGTTGGACCTAAATAAACTCTGTGATCAAGTAAGATGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCATGTTGGACCTAAATAAACTCTGTGATCAAGTAAGATGTGTT  100

seq1  GCTCTGTGATCCTCTGACAGGCTTTTGTGGTGTACTTAAGACTCATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGATCCTCTGACAGGCTTTTGTGGTGTACTTAAGACTCATGTTC  150

seq1  CAAGCACCCTGTTTAATTAGATTGGGGGGGGGGATTTTCTCTAAGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCCTGTTTAATTAGATTGGGGGGGGGGATTTTCTCTAAGTGGTG  200

seq1  ACTAGAGGAGACTAGCTAAGAGGATCTAACCCTCTTTACTGCTTATATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGGAGACTAGCTAAGAGGATCTAACCCTCTTTACTGCTTATATGC  250

seq1  TTTTCTAAGATCATCTTACCTTATATGTTAAAACACAGTGTGTTTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGATCATCTTACCTTATATGTTAAAACACAGTGTGTTTTTTAA  300

seq1  ATAAAACTATACTATATTAAATATTGTAAATCTGTTAACAATGGGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATACTATATTAAATATTGTAAATCTGTTAACAATGGGCATTT  350

seq1  TAGAATGAACATGATTTATTTTCTTATCTCAAAACAACTAGCTATTCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAACATGATTTATTTTCTTATCTCAAAACAACTAGCTATTCGCC  400

seq1  ATTGGCAAAATATCATTTCTAATTTACCAGGAGCCTCATTGCCAGTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAAATATCATTTCTAATTTACCAGGAGCCTCATTGCCAGTAAGG  450

seq1  TGTTATACCACAACATCCACAAAGCTCCTACTTATTGGTGGCAGAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATACCACAACATCCACAAAGCTCCTACTTATTGGTGGCAGAATCTT  500

seq1  TTGTACACAGGATTACCCTACACTTTCCACTTGATATTCTCAGAAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACACAGGATTACCCTACACTTTCCACTTGATATTCTCAGAAGAAGC  550

seq1  TGTCAATTTTCCTCACTACACAGCTTTTGTTATCACTGGTCATATGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTTCCTCACTACACAGCTTTTGTTATCACTGGTCATATGCAGT  600

seq1  CTTATTTTGCTTTGATTTCTTAGTTTTTCTGCTTCATCTCATCCACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGCTTTGATTTCTTAGTTTTTCTGCTTCATCTCATCCACTCTA  650

seq1  TTCATTATCTTGAGTCTTTCTCCTTCTTTCAAAAGGTAACCACACTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATCTTGAGTCTTTCTCCTTCTTTCAAAAGGTAACCACACTAAGA  700

seq1  TGCTTATC-TTTTGTTTGG-TGTCA-GGTCAAAACAG-AAAATACAGAC-  745
      |||||||| |||||||||| ||||| ||||||||||| ||||||||||| 
seq2  TGCTTATCTTTTTGTTTGGTTGTCAGGGTCAAAACAGAAAAATACAGACT  750

seq1  TTAG-AACTAAA-TTTACAGCTGAAACACAC-TTGAGCGA-CTCCAGTGT  791
      |||| ||||||| |||||||||||||||||| |||||||| |||||||||
seq2  TTAGAAACTAAATTTTACAGCTGAAACACACTTTGAGCGACCTCCAGTGT  800

seq1  GTCTTAAATATTGTGTGGAAT-GTTCTACTAAACACATAGCATATATTT-  839
      |||||||||||||||||| || ||||||||||||||||||||||||||| 
seq2  GTCTTAAATATTGTGTGGGATGGTTCTACTAAACACATAGCATATATTTT  850

seq1  -GTGCC--AAAAAATTATTCATTC-TTTGAAATTTAAATTTGTTATCAAG  885
       |||||  ||||| |||||||||| |||||||||||||||||||||||||
seq2  GGTGCCCAAAAAATTTATTCATTCTTTTGAAATTTAAATTTGTTATCAAG  900

seq1  TAGGAGTTTTGTTCGCTGAGGCT-AGGAAT  914
      |||||| |||||||||| ||||| ||||||
seq2  TAGGAG-TTTGTTCGCTTAGGCTAAGGAAT  929


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