BAC Information

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BAC

Clone NameB6Ng01-220M07
Chromosome11 (Build37)
Map Location 25,003,096 - 25,104,534
singlet/doubletdoublet
Overlap genenone
Upstream geneBcl11a, LOC100042282
Downstream gene5730522E02Rik, LOC100042328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M07.bB6Ng01-220M07.g
ACCGA036244GA036245
length1,1731,124
definitionB6Ng01-220M07.b B6Ng01-220M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,103,354 - 25,104,534)(25,003,096 - 25,004,216)
sequence
gaattcacattaaattaaaaagaaaacattcaaagtgcattatatacaac
ctcacgagacaaaaaccaaccaatcaaacaaaacaccaaacaacaagaag
aaaaataacaaaaatctcaagaaaacaaaacaaacaaaaacacatgaaat
gaaagacaaggaaagacaaagcttcaaagcttcaaatctcttcatagaaa
actaaacagaataaagtaaattcataagactgctttaataaaagaattca
actagtttcttggaggcagttcttccccaaaattcatattattctttgat
tgcataaagttcacctagctataagatagaaaataaagcaaaattatatt
gacaatataatgggaaactttgaaatatttggatattatattaacaagaa
tataaatctctgttgatacaattttaacaataatagattgaaaataaaaa
taaattatagcaattctgcaatcataggaaaatataacaacttttaatta
tagttaaaatagcagaaacttcgccataacttaataatctaaattattac
ttggactttgaaaaccctgaaacatattataaaattagatgtaagaatat
gtacttagaatctatacatgctaagtaaacttttaaatagtttagtcaag
aatgaagtttgtcaaagagatattgagtttgtaaccattggaaacaatat
agctttgtattcctaaaggaacagaatacattcctgagaccagactttac
cgttcagtgacaaacccatgcacacatgggaacttgactattgtcattag
gcagacacatagaaaggtaggtcacagtagacatgtggtggcacattgaa
gatcagcacacaggctatgcagcagaagattctggaaagacattactgtc
ctatagaaagtgcagaactaaactatcaaatgattaaaacaatgatatgt
taagtaaaatggataaattaaaagatattttgagataatattaaatagaa
attacatcaagtgatgtggagagcacaattaaaagttctaaactagtgta
ccaaagctcaagtcttggatcttttgtagtagtccccatttagatgaaaa
aaaaaaaaccaaaaacaaaaacttgtattgggttctgatgttacaaggtt
taaaggtactatttaacatgtga

gaattccataagcttcctggcttctcttcaatgagtgcgttctgcagaat
gtaaaccaagtcaggggctggagaaatggctcagcgttacagaggaccca
ggttcaattcccagcacccacatggtggctcacagctatctctaactcct
ttcccaggaaatctgatgtctactgtggttccatgggcatagcacagtat
ggtgaattaatttccattcaggaaaacagtgatgcacactcatggtgaat
agatatccattcaggcaaatagtgatagacacaaaataaagataaatata
aatctcaaataaaaaagaaaggatttgcctggcatggtggtgcattcctt
taatcccagcactcaggaggcagaggcaggcagatttctgagtttgaggc
cagcctggtctacagagtgagttccaggacagccagggctatacagagaa
accctgtctcgaaaaaacaaacaaacaaacaacaaaaaacaaaaaagaaa
gaaatttataagtggttctaggagacctgaatttcttttccagaaattac
agaaagcagttactattatttaaattagtagtatcatcatgtagcagctg
aattcaaaatgctagaatatagactattaaccttaactataattatggac
caatacccaagtatacttgcactcatgaatctcaaagcatttttcaaaca
taaattaattaatattcaaaactagtttgcccgtattaatttttcattat
atagactagactttgcagtttcgttgatttttatgtgctaatgtgctaat
aagctgtgcttcacttttgaaaattttctgctttcctgtgcaagccaaaa
aaaagaagagaaaggatcagattaacaatgcttggggggagggaacttta
attctactttgggacttcgatgctggtggtatgttttcaagtgcagcctc
tgtgacattgagactggctgtgtacagcacaggagagctgacgaggatcg
ccatggtctcctcccttgcttgttttcctcccttctgcatgcagacttta
acatttttgtctgactagatttatattggaacaagtgatgcttaatgtct
tggaataaaacatgacagctctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25103354_25104534
seq2: B6Ng01-220M07.b_46_1218 (reverse)

seq1  TCACATGTTAAATAGTA-CTTTAAACATTTGTACATCAGAAACCAATACA  49
      ||||||||||||||||| |||||||| ||   ||||||||| ||||||||
seq2  TCACATGTTAAATAGTACCTTTAAACCTTGTAACATCAGAACCCAATACA  50

seq1  AGTTTTTTTGTTTTTTGTTTTTTTTTTTCATTCTTAAATGGGGACCTACT  99
      ||  ||||||||||| ||||||||||||   || |||||||||| |||||
seq2  AG--TTTTTGTTTTTGGTTTTTTTTTTTTCATC-TAAATGGGGA-CTACT  96

seq1  AC-AAAGATCCAAGACCTGAGCTTTTGGTACACTAAGTTTTAGAACTTTT  148
      || ||||||||||||| ||||| ||||||||||||   ||||||||||||
seq2  ACAAAAGATCCAAGACTTGAGC-TTTGGTACACTA--GTTTAGAACTTTT  143

seq1  AATTGTGCTCCTCCACATCACTTGATGTAATTTCTATTTAATATTATTCT  198
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  AATTGTGCT-CTCCACATCACTTGATGTAATTTCTATTTAATATTA-TCT  191

seq1  CAAAATATTCTTTTAATTTATCCATTTTACTTAACATATCATTGTTTTAA  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATA-TCTTTTAATTTATCCATTTTACTTAACATATCATTGTTTTAA  240

seq1  TCATTTGATAGTTTAGTTCTGCACTTTCTATAGGACAGTAATGTCTTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATAGTTTAGTTCTGCACTTTCTATAGGACAGTAATGTCTTTCC  290

seq1  AGAATCTTCTGCTGCATAGCCTGTGTGCTGATCTTCAATGTGCCACCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCTGCTGCATAGCCTGTGTGCTGATCTTCAATGTGCCACCACA  340

seq1  TGTCTACTGTGACCTACCTTTCTATGTGTCTGCCTAATGACAATAGTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTGTGACCTACCTTTCTATGTGTCTGCCTAATGACAATAGTCAA  390

seq1  GTTCCCATGTGTGCATGGGTTTGTCACTGAACGGTAAAGTCTGGTCTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATGTGTGCATGGGTTTGTCACTGAACGGTAAAGTCTGGTCTCAG  440

seq1  GAATGTATTCTGTTCCTTTAGGAATACAAAGCTATATTGTTTCCAATGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTCTGTTCCTTTAGGAATACAAAGCTATATTGTTTCCAATGGT  490

seq1  TACAAACTCAATATCTCTTTGACAAACTTCATTCTTGACTAAACTATTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTCAATATCTCTTTGACAAACTTCATTCTTGACTAAACTATTTA  540

seq1  AAAGTTTACTTAGCATGTATAGATTCTAAGTACATATTCTTACATCTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTACTTAGCATGTATAGATTCTAAGTACATATTCTTACATCTAAT  590

seq1  TTTATAATATGTTTCAGGGTTTTCAAAGTCCAAGTAATAATTTAGATTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATGTTTCAGGGTTTTCAAAGTCCAAGTAATAATTTAGATTAT  640

seq1  TAAGTTATGGCGAAGTTTCTGCTATTTTAACTATAATTAAAAGTTGTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATGGCGAAGTTTCTGCTATTTTAACTATAATTAAAAGTTGTTAT  690

seq1  ATTTTCCTATGATTGCAGAATTGCTATAATTTATTTTTATTTTCAATCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATGATTGCAGAATTGCTATAATTTATTTTTATTTTCAATCTA  740

seq1  TTATTGTTAAAATTGTATCAACAGAGATTTATATTCTTGTTAATATAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTAAAATTGTATCAACAGAGATTTATATTCTTGTTAATATAATA  790

seq1  TCCAAATATTTCAAAGTTTCCCATTATATTGTCAATATAATTTTGCTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATTTCAAAGTTTCCCATTATATTGTCAATATAATTTTGCTTTA  840

seq1  TTTTCTATCTTATAGCTAGGTGAACTTTATGCAATCAAAGAATAATATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCTTATAGCTAGGTGAACTTTATGCAATCAAAGAATAATATGA  890

seq1  ATTTTGGGGAAGAACTGCCTCCAAGAAACTAGTTGAATTCTTTTATTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGAAGAACTGCCTCCAAGAAACTAGTTGAATTCTTTTATTAAA  940

seq1  GCAGTCTTATGAATTTACTTTATTCTGTTTAGTTTTCTATGAAGAGATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTATGAATTTACTTTATTCTGTTTAGTTTTCTATGAAGAGATTT  990

seq1  GAAGCTTTGAAGCTTTGTCTTTCCTTGTCTTTCATTTCATGTGTTTTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTGAAGCTTTGTCTTTCCTTGTCTTTCATTTCATGTGTTTTTGT  1040

seq1  TTGTTTTGTTTTCTTGAGATTTTTGTTATTTTTCTTCTTGTTGTTTGGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTCTTGAGATTTTTGTTATTTTTCTTCTTGTTGTTTGGTG  1090

seq1  TTTTGTTTGATTGGTTGGTTTTTGTCTCGTGAGGTTGTATATAATGCACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGATTGGTTGGTTTTTGTCTCGTGAGGTTGTATATAATGCACT  1140

seq1  TTGAATGTTTTCTTTTTAATTTAATGTGAATTC  1181
      |||||||||||||||||||||||||||||||||
seq2  TTGAATGTTTTCTTTTTAATTTAATGTGAATTC  1173


seq1: chr11_25003096_25004216
seq2: B6Ng01-220M07.g_66_1189

seq1  GAATTCCATAAGCTTCCTGGCTTCTCTTCAATGAGTGCGTTCTGCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGCTTCCTGGCTTCTCTTCAATGAGTGCGTTCTGCAGAAT  50

seq1  GTAAACCAAGTCAGGGGCTGGAGAAATGGCTCAGCGTTACAGAGGACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAAGTCAGGGGCTGGAGAAATGGCTCAGCGTTACAGAGGACCCA  100

seq1  GGTTCAATTCCCAGCACCCACATGGTGGCTCACAGCTATCTCTAACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTCCCAGCACCCACATGGTGGCTCACAGCTATCTCTAACTCCT  150

seq1  TTCCCAGGAAATCTGATGTCTACTGTGGTTCCATGGGCATAGCACAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGAAATCTGATGTCTACTGTGGTTCCATGGGCATAGCACAGTAT  200

seq1  GGTGAATTAATTTCCATTCAGGAAAACAGTGATGCACACTCATGGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTAATTTCCATTCAGGAAAACAGTGATGCACACTCATGGTGAAT  250

seq1  AGATATCCATTCAGGCAAATAGTGATAGACACAAAATAAAGATAAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCCATTCAGGCAAATAGTGATAGACACAAAATAAAGATAAATATA  300

seq1  AATCTCAAATAAAAAAGAAAGGATTTGCCTGGCATGGTGGTGCATTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAATAAAAAAGAAAGGATTTGCCTGGCATGGTGGTGCATTCCTT  350

seq1  TAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC  400

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAA  450

seq1  ACCCTGTCTCGAAAAAACAAACAAACAAACAACAAAAAACAAAAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGAAAAAACAAACAAACAAACAACAAAAAACAAAAAAGAAA  500

seq1  GAAATTTATAAGTGGTTCTAGGAGACCTGAATTTCTTTTCCAGAAATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATAAGTGGTTCTAGGAGACCTGAATTTCTTTTCCAGAAATTAC  550

seq1  AGAAAGCAGTTACTATTATTTAAATTAGTAGTATCATCATGTAGCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGTTACTATTATTTAAATTAGTAGTATCATCATGTAGCAGCTG  600

seq1  AATTCAAAATGCTAGAATATAGACTATTAACCTTAACTATAATTATGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATGCTAGAATATAGACTATTAACCTTAACTATAATTATGGAC  650

seq1  CAATACCCAAGTATACTTGCACTCATGAATCTCAAAGCATTTTTCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCCAAGTATACTTGCACTCATGAATCTCAAAGCATTTTTCAAACA  700

seq1  TAAATTAATTAATATTCAAAACTAGTTTGCCCGTATTAATTTTTCATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATTAATATTCAAAACTAGTTTGCCCGTATTAATTTTTCATTAT  750

seq1  ATAGACTAGACTTTGCAGTTTCGTTGATTTTTATGTGCTAATGTGCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTAGACTTTGCAGTTTCGTTGATTTTTATGTGCTAATGTGCTAAT  800

seq1  AAGCTGTGCTTCACTTTTGAAAATTTTCTGCTTTCCTGTGCAAGCC-AAA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCTGTGCTTCACTTTTGAAAATTTTCTGCTTTCCTGTGCAAGCCAAAA  850

seq1  AAAAGAAGAG-AAGGATCAGATTAACAATGCTT-GGGGGAGGGAACTTTA  897
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  AAAAGAAGAGAAAGGATCAGATTAACAATGCTTGGGGGGAGGGAACTTTA  900

seq1  ATTCTACTTT-GGACTTCGATGCTGGTGGTATGTTTTCAAGTGCAGCCTC  946
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTTTGGGACTTCGATGCTGGTGGTATGTTTTCAAGTGCAGCCTC  950

seq1  TGTGACATTGAGACTGGCTGTGTACAGCACAGGAGAGCTGACGAGGATCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTGAGACTGGCTGTGTACAGCACAGGAGAGCTGACGAGGATCG  1000

seq1  CCATGGTCTCCTCCCTTGCTTGTTTTCCTCCCTTCCTGCATGCCAGGACT  1046
      |||||||||||||||||||||||||||||||||| ||||||||   ||||
seq2  CCATGGTCTCCTCCCTTGCTTGTTTTCCTCCCTT-CTGCATGC--AGACT  1047

seq1  TTAACA-TTTTGTCTTGACCTAGATTTATA-TGGAAACAGTGATGC-TAA  1093
      |||||| ||||||| ||| ||||||||||| |||||  |||||||| |||
seq2  TTAACATTTTTGTC-TGA-CTAGATTTATATTGGAACAAGTGATGCTTAA  1095

seq1  TGTCT--GGATAAAACATGACAGTTTCTGT  1121
      |||||  | ||||||||||||||  |||||
seq2  TGTCTTGGAATAAAACATGACAG-CTCTGT  1124


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