BAC Information

Click to search

BAC

Clone NameB6Ng01-221B18
Chromosome8 (Build37)11 (Build37)
Map Location 40,250,266 - 40,251,403109,354,507 - 109,354,838
singlet/doubletsingletsinglet
Overlap geneLOC100038974
Upstream geneTusc3
Downstream geneLOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221B18.bB6Ng01-221B18.g
ACCGA036491GA036492
length1,159777
definitionB6Ng01-221B18.b B6Ng01-221B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,250,266 - 40,251,403)(109,354,507 - 109,354,838)
sequence
gaattcttgaggttcattctttgttgattgtgatatactagcttattctt
gtataatttttttaaactgtggattttcctaaaacatttaatttatagaa
atggatgtgtaacattccataatccgcaatggactatcaaagtgttttta
aatattctcaatgtatgccacaggagtgaaataaatgacattgtaactat
gaattcatgttttagaattgtgtgtgctcccatgtaaggaaaccacttgt
tagtaaagaaatccatggattatatgtaaaagaattgctagtactgtaca
aggatagagcatatgcatgaaatatgtcgtgtggacaataattcttactt
cagtttcacttataaaggatgaacactgttacaaaagtgttttgttattc
ttcttcacaactagatcataaatacataggacaaagaggtggataagtgt
taatgccagttcagatccttaacctaaagaacgaagctagaaggaacctt
agacttcaccatacctccaatggagtcaggcaatagaaccatgtgtcatt
attcaatgtttttgtgaagctctttacaaattctgactcatgaaatccaa
tctactacggtcactttccttttgtttaatggaccgggcagggacctgga
tccctatgaattgttagttttcccagaatgactcagatgaagcttcttga
taaccaaatacagaaggaatgtaactatttgttattgttttgttgttaac
gaacgtaactgtgtatagcatacccatgtacatcccagtattcctcacat
cttttcaatagacaggcaatgcaagaacttttctgtgagttatagagata
gtagaaaccagctgaaaaccaaaattataagttgtactttataattcagc
ctttttaaacatttttttgtaaactctgtactgcaactgaaagaatattt
tcctttatttggttcagtaagtttttaaccattttttaaaagcttatatc
tgaatagtaaaacctgttgggagtgatttattccagtggccatccccagc
ttgtatagtcacaaattagagttatacctattcttctgattttgcataat
tactttagacctactttaaacttttatcatactctgatatctctatctaa
agcatagtt

gaattcctcttttcatcgggatccactatggggagccatggagaaggcct
tcgcctatagggccaccatctactcttggtagaaggtctcattgtgctcc
tagccacagcgccactaagccaagcctgccaccactgtcaaaccaaggat
tctcccggagggaccagctggcttcccccctttttaccccagccctaggc
tagatccagcctatatgcccccaccccattctcaactcttatgtggcacc
cagcagtgcctgggtgtacaaaagcccgagaaccagatggcccctggcct
ccttgcaggactggggaccccgtacctcagactgtacttccctgttccca
gagtgatgtcccaggactgcactacagccccacacctgccctacatgggg
taaacacagtcaaacttcctgcatcctgcctccccatgtggcagacccct
gtcatggagcagacactggaccctaaaaccttacataagccaaataaacc
ccttcatcctcaaaaaaaaaaaaaacaaagaaacaaaaaaacaaaacaaa
aacaaaaaaacaaaaacactattaagtcagacaaaacttagtcttctaaa
gaggtcctgcagcctctgtgcacatattttgctcagctcttccttccagt
tgtcttgttctttcatcatctctaactctggtaaatcagagattcaggaa
gctgaaagtacagttcatcatcatctccctctctctctctctctctctct
ctctctctctctctctctctgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40250266_40251403
seq2: B6Ng01-221B18.b_47_1205

seq1  GAATTCTTGAGGTTCATTCTTTGTTGATTGTGATATACTAGCTTATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGTTCATTCTTTGTTGATTGTGATATACTAGCTTATTCTT  50

seq1  GTATAATTTTTTTAAACTGTGGATTTTCCTAAAACATTTAATTTATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTTTTTTAAACTGTGGATTTTCCTAAAACATTTAATTTATAGAA  100

seq1  ATGGATGTGTAACATTCCATAATCCGCAATGGACTATCAAAGTGTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGTAACATTCCATAATCCGCAATGGACTATCAAAGTGTTTTTA  150

seq1  AATATTCTCAATGTATGCCACAGGAGTGAAATAAATGACATTGTAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTCAATGTATGCCACAGGAGTGAAATAAATGACATTGTAACTAT  200

seq1  GAATTCATGTTTTAGAATTGTGTGTGCTCCCATGTAAGGAAACCACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTTAGAATTGTGTGTGCTCCCATGTAAGGAAACCACTTGT  250

seq1  TAGTAAAGAAATCCATGGATTATATGTAAAAGAATTGCTAGTACTGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGAAATCCATGGATTATATGTAAAAGAATTGCTAGTACTGTACA  300

seq1  AGGATAGAGCATATGCATGAAATATGTCGTGTGGACAATAATTCTTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAGCATATGCATGAAATATGTCGTGTGGACAATAATTCTTACTT  350

seq1  CAGTTTCACTTATAAAGGATGAACACTGTTACAAAAGTGTTTTGTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCACTTATAAAGGATGAACACTGTTACAAAAGTGTTTTGTTATTC  400

seq1  TTCTTCACAACTAGATCATAAATACATAGGACAAAGAGGTGGATAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACAACTAGATCATAAATACATAGGACAAAGAGGTGGATAAGTGT  450

seq1  TAATGCCAGTTCAGATCCTTAACCTAAAGAACGAAGCTAGAAGGAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGTTCAGATCCTTAACCTAAAGAACGAAGCTAGAAGGAACCTT  500

seq1  AGACTTCACCATACCTCCAATGGAGTCAGGCAATAGAACCATGTGTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCACCATACCTCCAATGGAGTCAGGCAATAGAACCATGTGTCATT  550

seq1  ATTCAATGTTTTTGTGAAGCTCTTTACAAATTCTGACTCATGAAATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGTTTTTGTGAAGCTCTTTACAAATTCTGACTCATGAAATCCAA  600

seq1  TCTACTACGGTCACTTTCCTTTTGTTTAATGGACCGGGCAGGGACCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACGGTCACTTTCCTTTTGTTTAATGGACCGGGCAGGGACCTGGA  650

seq1  TCCCTATGAATTGTTAGTTTTCCCAGAATGACTCAGATGAAGCTTCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGAATTGTTAGTTTTCCCAGAATGACTCAGATGAAGCTTCTTGA  700

seq1  TAACCAAATACAGAAGGAATGTAACTA-TTGTTATTG-TTTGTTGTTAAC  748
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TAACCAAATACAGAAGGAATGTAACTATTTGTTATTGTTTTGTTGTTAAC  750

seq1  GAACGTAACTGTGTATAGCATACCCATGTACATCCCAGTATTCCTCACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTAACTGTGTATAGCATACCCATGTACATCCCAGTATTCCTCACAT  800

seq1  CTTTTCAATAGACAGGCAATGCAAGAACTTTTCTGTGAGTTATAGAGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATAGACAGGCAATGCAAGAACTTTTCTGTGAGTTATAGAGATA  850

seq1  GTAGAAACCAGCTGAAAACCAAAA-TATAAGTTGTAC-TTATAA-TCAGC  895
      |||||||||||||||||||||||| |||||||||||| |||||| |||||
seq2  GTAGAAACCAGCTGAAAACCAAAATTATAAGTTGTACTTTATAATTCAGC  900

seq1  C-TTTTAAACATTTTTTGTAAAACTCTGTACTGCAACTGAAAGAA-ATAT  943
      | |||||||||||||||   ||||||||||||||||||||||||| || |
seq2  CTTTTTAAACATTTTTTTGTAAACTCTGTACTGCAACTGAAAGAATATTT  950

seq1  TTCCTTAATTGGTTCAGTAAG-TTTTAAC--ATTTTTAAAAGCTTATATC  990
      | | ||| ||||||||||||| |||||||   ||||||||||||||||||
seq2  TCCTTTATTTGGTTCAGTAAGTTTTTAACCATTTTTTAAAAGCTTATATC  1000

seq1  TGAATAGTAAAA-CTGT--GGAGTGATTTA-TCCAGTGGCAAT-CCCAGC  1035
      |||||||||||| ||||  ||||||||||| ||||||||| || ||||||
seq2  TGAATAGTAAAACCTGTTGGGAGTGATTTATTCCAGTGGCCATCCCCAGC  1050

seq1  -TGTATAGTCACAAATAGGAGTAATA-CTATTC-TCTGAATTTGCATAA-  1081
       |||||||||||||||  |||| ||| |||||| ||||| ||||||||| 
seq2  TTGTATAGTCACAAATTAGAGTTATACCTATTCTTCTGATTTTGCATAAT  1100

seq1  TAATTTAGAACTACATTAA--CTTTATCATACTCTGATATCTCTTACTAA  1129
      || |||||| |||| ||||   ||||||||||||||||||||||  ||||
seq2  TACTTTAGACCTACTTTAAACTTTTATCATACTCTGATATCTCTATCTAA  1150

seq1  AGCATAGTT  1138
      |||||||||
seq2  AGCATAGTT  1159


seq1: chr11_109354507_109354838
seq2: B6Ng01-221B18.g_610_841 (reverse)

seq1  CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  --CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  48

seq1  GGCCCTTCCTAGCTCTGGGCTTCAGAGAT-AAAAGTAACT-TGCCTTCCC  98
      ||                      ||||| |  |  |||| | | |||  
seq2  GG----------------------GAGATGATGATGAACTGTACTTTCAG  76

seq1  ACTCCTGGCACAAGCACAAGGCTTCCTGTGTAACAAGCAATTACTATTCG  148
        |||||          ||   |  |||  | || || | |||      |
seq2  CTTCCTG----------AA---TCTCTGATTTACCAG-AGTTA----GAG  108

seq1  CTCATCAATAGATGGGCCTTAGAGCCAGGCATCGTGGTGCTCACCTGTAC  198
       | || ||            ||| | || ||                 ||
seq2  ATGATGAA------------AGAACAAGACA-----------------AC  129

seq1  TCTCCGCTTGCTAGAAGCTGAGTCAGGAAGACTGC----AAGCTTAAGGC  244
      |    |   |  || ||||||| ||  |    |||    | |||  ||| 
seq2  T----GGAAGGAAG-AGCTGAG-CAAAATATGTGCACAGAGGCTGCAGGA  173

seq1  CATCTTATCTAAAAAACTATAGGGTGTGTGGGAGCTGGCTGCAATAGTTT  294
      | ||||   || || ||  || | | |||     ||| ||  |||||| |
seq2  CCTCTT---TAGAAGAC--TAAGTTTTGT-----CTGACT-TAATAGTGT  212

seq1  TTAAAATGTCATTTTTTTTTTTTTGTTACTGTTTTTGT  332
      ||      |  ||||||| |||||||            
seq2  TT------TTGTTTTTTTGTTTTTGT------------  232


| Home | SequenceCutter | Blast | Download |