BAC Information

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BAC

Clone NameB6Ng01-221G04
Chromosome11 (Build37)
Map Location 8,901,959 - 8,993,434
singlet/doubletdoublet
Overlap geneHus1, Sunc1, OTTMUSG00000005148
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800
Downstream geneUpp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221G04.bB6Ng01-221G04.g
ACCGA036694GA036695
length1,112690
definitionB6Ng01-221G04.b B6Ng01-221G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,901,959 - 8,902,621)(8,992,745 - 8,993,434)
sequence
gaattccaaatagtttggaccagaaaagaaattcctcccgtcacatagta
atcaaaacaccaaatgtacaaaacaaagaaagaatactaaaagcagtaag
ggaaaaagatcaagtaacatgtaaaggcagacttatcagaattataccag
actccttgccagaaactataaaaatgatgatgagagtggggtgttaaagt
ctcccactattattatgtgtggtgcaacatatgctttgagcttaggtaaa
gtttctattatgaatgtgggtgcccttgcatttggagcatagatgttcag
aattgagagttgttcttggtagattttacctttaatgagtatgaagtgcc
cctccttatcttttttgataactttaggttggaagtcaattttattcagt
attagaaaggctactccaccctacttcttggaaccattcgcttggaaaat
tattttccagccttttactctgaggtagtgtctgtgtttgtggctgagct
gagtttcctgtatgcagcaaaatgatgggtcctgtttacataaccagtct
gttagtctatgtctttttattggggaattgagtccatttgatattaagag
atattaaggaaaagtcattgttgcttcctgttatttttgttgttagagtt
aggattctgttcatgtggctatcttcttttagttttgttgaaagattacg
ttcttgctttttctagggtgcagtttccctctatgtgttggagttttccc
tttattagcctttgaagggctagatttgtggaaagatactgtgtattttg
gttttgtcatggaataccttggtttttccatcaatggtaattgagagttt
tgctgggtataatagcctgggctgacatttgtgttcttttagggtctgta
tgaccattctgcccaggatcttctgggtttttatagcagcagtccagctg
tcaagagcattttaatcactctgatgaactttagaggtaacttacagtct
ggcaccagtacaattagtccgttggctcacttattggcactttgcaatga
tttagcagttgttgggaaatgtaagctcctttgtctttgttgttaggaaa
cttggtaaatcg

gaattcacctcttttatttacatgtatgaaacattcgagttaggttagca
cagatataggggaagatagtgtacgtggcctagacacaatggtctaaaag
ggccaaatagaaaaacaaaggaatgagttttatggcctcaacccaaggaa
cagaagtccacatgactattacaatacatagctctgaatgccaagtgctg
ctctctggatctccttttaatcccccctggactactatgtataagctctt
gctgggaaaggaactcatgatggacatgcagaggagtggaaggtgcttct
agtgctgctgcccagggagcacctggtgacactgcaaaggagagactgac
cttgctgccattttgtctcaggtaagcaggctgggtctgaggtcagatag
atctgtgactctccatgttggccagaatgtaactcctatagaaaccatct
tcggaaggctggagagatggcacagcagttaagagcactactgctttccc
agaggatctaggttcaatccccattaccctgatgggaactcataactaca
gtctcagggaatgacacaccttcttctggtgtccgaaggcactgcacaga
cagggtgcacagtcaggctaaagacccatatacacaaaataaaaacaaag
ggaaaaacatatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8901959_8902621
seq2: B6Ng01-221G04.b_484_1155

seq1  CTTGGAAAATTATTTTCCAGCCTTTTACTCTGAGGTAGTGTCTGTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAATTATTTTCCAGCCTTTTACTCTGAGGTAGTGTCTGTGTTTG  50

seq1  TGGCTGAGCTGAGTTTCCTGTATGCAGCAAAATGATGGGTCCTGTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGCTGAGTTTCCTGTATGCAGCAAAATGATGGGTCCTGTTTACA  100

seq1  TAACCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGTCCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGTCCATTTG  150

seq1  ATATTAAGAGATATTAAGGAAAAGTCATTGTTGCTTCCTGTTATTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAGATATTAAGGAAAAGTCATTGTTGCTTCCTGTTATTTTTGT  200

seq1  TGTTAGAGTTAGGATTCTGTTCATGTGGCTATCTTCTTTTAGTTTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGTTAGGATTCTGTTCATGTGGCTATCTTCTTTTAGTTTTGTTG  250

seq1  AAAGATTACGTTCTTGCTTTTTCTAGGGTGCAGTTTCCCTCTATGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTACGTTCTTGCTTTTTCTAGGGTGCAGTTTCCCTCTATGTGTTG  300

seq1  GAGTTTTCCCTTTATTAGCCTTTGAAGGGCTAGATTTGTGGAAAGATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCCCTTTATTAGCCTTTGAAGGGCTAGATTTGTGGAAAGATACT  350

seq1  GTGTATTTTGGTTTTGTCATGGAATACCTTGGTTTTTCCATCAATGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTGGTTTTGTCATGGAATACCTTGGTTTTTCCATCAATGGTAA  400

seq1  TTGAGAGTTTTGCTGGGTATAATAGCCTGGGCTGACATTTGTGTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTTTTGCTGGGTATAATAGCCTGGGCTGACATTTGTGTTCTTTT  450

seq1  AGGGTCTGTATGAC--ATCTGCCCAGGATCTTCT-GGTTTTTATAGCAGC  497
      ||||||||||||||   ||||||||||||||||| |||||||||||||||
seq2  AGGGTCTGTATGACCATTCTGCCCAGGATCTTCTGGGTTTTTATAGCAGC  500

seq1  AGTCCAGCTGTCAGGAGCATTTT-ATCACTCTGATGAA-TTTAGAGGTAA  545
      ||||||||||||| ||||||||| |||||||||||||| |||||||||||
seq2  AGTCCAGCTGTCAAGAGCATTTTAATCACTCTGATGAACTTTAGAGGTAA  550

seq1  CTTACAGT-AGGCACCAGTACAATTAGTCAGT--GGTCAACTAATGGCAC  592
      ||||||||  ||||||||||||||||||| ||  | |||  || ||||||
seq2  CTTACAGTCTGGCACCAGTACAATTAGTCCGTTGGCTCACTTATTGGCAC  600

seq1  TTTGCAGTGATTAAGCCAGTTGTTGGGAAATGTAAGCTC--TTGTC-TTG  639
      |||||| ||||| || |||||||||||||||||||||||  ||||| |||
seq2  TTTGCAATGATTTAG-CAGTTGTTGGGAAATGTAAGCTCCTTTGTCTTTG  649

seq1  TTGTTTAGGAAACTGGGTACATCG  663
      ||| |||||||||| |||| ||||
seq2  TTG-TTAGGAAACTTGGTAAATCG  672


seq1: chr11_8992745_8993434
seq2: B6Ng01-221G04.g_65_754 (reverse)

seq1  ACACACACACACACACACACACACACACATATGTTTTTCCCTTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATATGTTTTTCCCTTTGTTTTT  50

seq1  ATTTTGTGTATATGGGTCTTTAGCCTGACTGTGCACCCTGTCTGTGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTATATGGGTCTTTAGCCTGACTGTGCACCCTGTCTGTGCAGT  100

seq1  GCCTTCGGACACCAGAAGAAGGTGTGTCATTCCCTGAGACTGTAGTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGGACACCAGAAGAAGGTGTGTCATTCCCTGAGACTGTAGTTATG  150

seq1  AGTTCCCATCAGGGTAATGGGGATTGAACCTAGATCCTCTGGGAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCATCAGGGTAATGGGGATTGAACCTAGATCCTCTGGGAAAGCAG  200

seq1  TAGTGCTCTTAACTGCTGTGCCATCTCTCCAGCCTTCCGAAGATGGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTCTTAACTGCTGTGCCATCTCTCCAGCCTTCCGAAGATGGTTTC  250

seq1  TATAGGAGTTACATTCTGGCCAACATGGAGAGTCACAGATCTATCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGTTACATTCTGGCCAACATGGAGAGTCACAGATCTATCTGACC  300

seq1  TCAGACCCAGCCTGCTTACCTGAGACAAAATGGCAGCAAGGTCAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCAGCCTGCTTACCTGAGACAAAATGGCAGCAAGGTCAGTCTCT  350

seq1  CCTTTGCAGTGTCACCAGGTGCTCCCTGGGCAGCAGCACTAGAAGCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGTGTCACCAGGTGCTCCCTGGGCAGCAGCACTAGAAGCACCT  400

seq1  TCCACTCCTCTGCATGTCCATCATGAGTTCCTTTCCCAGCAAGAGCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCTCTGCATGTCCATCATGAGTTCCTTTCCCAGCAAGAGCTTAT  450

seq1  ACATAGTAGTCCAGGGGGGATTAAAAGGAGATCCAGAGAGCAGCACTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGTCCAGGGGGGATTAAAAGGAGATCCAGAGAGCAGCACTTGG  500

seq1  CATTCAGAGCTATGTATTGTAATAGTCATGTGGACTTCTGTTCCTTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAGCTATGTATTGTAATAGTCATGTGGACTTCTGTTCCTTGGGT  550

seq1  TGAGGCCATAAAACTCATTCCTTTGTTTTTCTATTTGGCCCTTTTAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCATAAAACTCATTCCTTTGTTTTTCTATTTGGCCCTTTTAGACC  600

seq1  ATTGTGTCTAGGCCACGTACACTATCTTCCCCTATATCTGTGCTAACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCTAGGCCACGTACACTATCTTCCCCTATATCTGTGCTAACCTA  650

seq1  ACTCGAATGTTTCATACATGTAAATAAAAGAGGTGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAATGTTTCATACATGTAAATAAAAGAGGTGAATTC  690


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