BAC Information

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BAC

Clone NameB6Ng01-221I16
Chromosome11 (Build37)
Map Location 24,631,436 - 24,632,553
singlet/doubletsinglet
Overlap genenone
Upstream gene4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221I16.bB6Ng01-221I16.g
ACCGA036805GA036806
length3201,120
definitionB6Ng01-221I16.b B6Ng01-221I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctccccatgactcctaacttgaaggagtattgtattttgataaag
gctttttcagcatctaataagatgacacagggcactcaatggaggagcta
gagaaagtacccaaggagctaaaggggtctgcaaccctataggtggagca
acaatatgaactaaccagtaccccccagagcttgtgtctctagcggcata
tgtagcagaagatggcctagtcagccatcattgggaagagaggccctttg
gtcttgcaaactttatatgcctcagtacaggggaacaccagggccaagaa
gtgggagtgggtgggtaggg

gaattccacctacctctgcctcccaactactaggactaaatgcatgcaac
cttaccgctccccccacaagaatgatatttcaaccggggtcttccagaac
tgcctttaaccccaaatgaaagatagtgatatggtgtgaagccattgaag
aaactgtcgaggagacgtggtatcctccagatcacaccagaaagccagct
gcctcttcactcccctacagtgcaggcctacttgaaagattccaactctc
tttatacttgctctctcaaaggaagttgtcactttcagctacacaaacct
aaacttccaaaatcaggtgcttgggggaaaaaattggaagtacttttaat
aatttaaatggctcttctctgcacatgcccagaacccaaatcccttttct
aactgaagtgcttatataaaaatttgacagctcttataattttaaattgc
tctacactgagtatgcctagaaccttgatcacttccaaattcaagggctt
ataaaaatttgaagcactccaataattttaaattgcaatgcacagtgtag
agtgatttaaaattattggactgcttcaattttttttaaaaggtcttcaa
tttggaagtgagtcaagcagcattctaatacagtagcttaagacatagta
tgctaatcaaaaatgtaacacctaaaaataatggaaattaaaccacacgc
aattttattctctttttctttttctctctccttccccctttcccattttt
ctctcattcttcccttcttcttagacagggaaactcagaatgcacctaaa
cttttttatgtaaaagcccaagccacaggaaaagaaaagttaggagggaa
agtcagcagggaattgcagagcagaaaggcagcctcagcacagtggtgct
ggagcctcagctgcagagcaaaggaaggcagggaagggctggacctaggc
agacactagactgcattctggagcacgtgatcagtgcctgggattcctgt
agaacaacactttccccaaaaaggcaattctttcatttgtcatagaattc
atttatttgaatggggctggcagagaaatttctaacttctttgccttcaa
gtctctgtgattaggcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24631436_24632553
seq2: B6Ng01-221I16.g_64_1183 (reverse)

seq1  GGCTGGCTAATCACAGAGACCTTGAA-GCAAAGAAGGTAGGAATTTTCTC  49
      ||||| ||||||||||||| |||||| ||||||||| || ||| ||||||
seq2  GGCTGCCTAATCACAGAGA-CTTGAAGGCAAAGAAGTTA-GAAATTTCTC  48

seq1  TGCAAGCCCCA-TCAAATAAATGAAATCTATGACAAATGAAAGAATTTGC  98
      ||| ||||||| ||||||||||||| |||||||||||||||||||||  |
seq2  TGCCAGCCCCATTCAAATAAATGAATTCTATGACAAATGAAAGAATTGCC  98

seq1  CTTTTGGGGAAAGTTGTTG-TCTACAGGAATCCCAGGCACTGATCACGTG  147
       |||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TTTTTGGGGAAAG-TGTTGTTCTACAGGAATCCCAGGCACTGATCACGTG  147

seq1  CTCCAGATTGCAGTCTAGTGTCTGCCTAGGTCCAGCCCTTCCCTGCC-TC  196
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCAGAATGCAGTCTAGTGTCTGCCTAGGTCCAGCCCTTCCCTGCCTTC  197

seq1  CCTTGCTCTGCAGCTGAGGCTCCAGCACCACTGTGCTGAGGCTGCC-TTC  245
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTGCTCTGCAGCTGAGGCTCCAGCACCACTGTGCTGAGGCTGCCTTTC  247

seq1  TGCTCTGCAATTCCCTGCTGACTTTCCCTCCTAACTTTTCTTTTCCTGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCAATTCCCTGCTGACTTTCCCTCCTAACTTTTCTTTTCCTGTG  297

seq1  GCTTGGGCTTTTACAT-AAAAAGTTTAGGTGCATTCTGAGTTTCCCTGTT  344
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  GCTTGGGCTTTTACATAAAAAAGTTTAGGTGCATTCTGAGTTTCCCTG-T  346

seq1  CTAAGAAGAAGGGAAGAATGAGAGAAAAATGGGAAAGGGGGAAGGAGAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGAAGGGAAGAATGAGAGAAAAATGGGAAAGGGGGAAGGAGAGA  396

seq1  GAAAAAGAAAAAGAGAATAAAATTGCGTGTGGTTTAATTTCCATTATTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAAAGAGAATAAAATTGCGTGTGGTTTAATTTCCATTATTTT  446

seq1  TAGGTGTTACATTTTTGATTAGCATACTATGTCTTAAGCTACTGTATTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTACATTTTTGATTAGCATACTATGTCTTAAGCTACTGTATTAG  496

seq1  AATGCTGCTTGACTCACTTCCAAATTGAAGACCTTTTAAAAAAAATTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGCTTGACTCACTTCCAAATTGAAGACCTTTTAAAAAAAATTGAA  546

seq1  GCAGTCCAATAATTTTAAATCACTCTACACTGTGCATTGCAATTTAAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCAATAATTTTAAATCACTCTACACTGTGCATTGCAATTTAAAAT  596

seq1  TATTGGAGTGCTTCAAATTTTTATAAGCCCTTGAATTTGGAAGTGATCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGTGCTTCAAATTTTTATAAGCCCTTGAATTTGGAAGTGATCAA  646

seq1  GGTTCTAGGCATACTCAGTGTAGAGCAATTTAAAATTATAAGAGCTGTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGGCATACTCAGTGTAGAGCAATTTAAAATTATAAGAGCTGTCA  696

seq1  AATTTTTATATAAGCACTTCAGTTAGAAAAGGGATTTGGGTTCTGGGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATATAAGCACTTCAGTTAGAAAAGGGATTTGGGTTCTGGGCAT  746

seq1  GTGCAGAGAAGAGCCATTTAAATTATTAAAAGTACTTCCAATTTTTTCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGAAGAGCCATTTAAATTATTAAAAGTACTTCCAATTTTTTCCC  796

seq1  CCAAGCACCTGATTTTGGAAGTTTAGGTTTGTGTAGCTGAAAGTGACAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACCTGATTTTGGAAGTTTAGGTTTGTGTAGCTGAAAGTGACAAC  846

seq1  TTCCTTTGAGAGAGCAAGTATAAAGAGAGTTGGAATCTTTCAAGTAGGCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGAGAGAGCAAGTATAAAGAGAGTTGGAATCTTTCAAGTAGGCC  896

seq1  TGCACTGTAGGGGAGTGAAGAGGCAGCTGGCTTTCTGGTGTGATCTGGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTAGGGGAGTGAAGAGGCAGCTGGCTTTCTGGTGTGATCTGGAG  946

seq1  GATACCACGTCTCCTCGACAGTTTCTTCAATGGCTTCACACCATATCACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACGTCTCCTCGACAGTTTCTTCAATGGCTTCACACCATATCACT  996

seq1  ATCTTTCATTTGGGGTTAAAGGCAGTTCTGGAAGACCCCGGTTGAAATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCATTTGGGGTTAAAGGCAGTTCTGGAAGACCCCGGTTGAAATAT  1046

seq1  CATTCTTGTGGGGGGAGCGGTAAGGTTGCATGCATTTAGTCCTAGTAGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGTGGGGGGAGCGGTAAGGTTGCATGCATTTAGTCCTAGTAGTT  1096

seq1  GGGAGGCAGAGGTAGGTGGAATTC  1118
      ||||||||||||||||||||||||
seq2  GGGAGGCAGAGGTAGGTGGAATTC  1120


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