BAC Information

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BAC

Clone NameB6Ng01-221K20
Chromosome11 (Build37)
Map Location 87,410,128 - 87,411,062
singlet/doubletsinglet
Overlap geneMtmr4
Upstream geneTmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4
Downstream geneHsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221K20.bB6Ng01-221K20.g
ACCGA036904GA036905
length9551,122
definitionB6Ng01-221K20.b B6Ng01-221K20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccctcagatcagcaggcggggcaggttgcttggcaggtagtggg
ggcttgtccatatcgagagcccaatgggaagatcagctcagctccaaaac
acaggcttcctttttgaaggcattcacaaaggccctctagaggcatggga
ctgaatccccccaacctcctcctctttgtctccacccaccaggttgatgc
ttgagtggctggaggggcctgttttctttctctctagccagctacctcag
ctggctcctgtgcctcaggtgcctctcccaaccctaccagtcttattctg
gtaggaggctttcttaattccctcccttcctcacggtttttgcaattttg
gttcaaaggagaagtctgtttaagcggtacagattctctgttcctccttg
gcttagttcacgtttccctgagtaccactttattctactcctcctccagc
caagtcaggtctcctttaaaacaaaggaaggtgtctgtaggtttgttggt
agaggagcaaagtgaatgagccttaggagccaggtggggtggcaaactca
aggttatggcctccctgcagggtgaggagggcccccccagcctggagtac
atccaagccaaggatctgttcccccccaaggaactggtgaaggaggagga
gaatcttcaggtaaggagaacaggaggctcatggtgggaggggctttcct
gcccagtttgtgttccagactttttaaatcttttagaggatctaccagag
cccttggcttccctcctcctgggccttgtgaaggtgggtgggctccttgt
aatttgtcagtctgtgttattggagcctttgggcctcagggaaaggggag
agggcagtttttcctgcacagcataatgaccagtgtcttgaccttgaact
aatcctgcatcatccccctttccttcaggggctgctatagagcagggtct
gctga
gaattcactgtgtagcccaggatgactctgagcttctgatcacacataca
cacacacacacacacacacacacacacacacacacagacagacacccctc
acaaacactaggataaagaagattcatcacccatgcttttacacagtgcc
aggaattgagccaataactttgcacatggtaggcaggtgctcttatcaaa
tgaaccacactcctatccctctggatgtattctacatatttagaaacttt
catattaaaaagctgaagtatctgggggtagtgatatatgcctataatct
cagctcttagcagttcagagccaggtggatgagaagttaggactagcctg
gattacttagtgatatcatatctcaaaagtgagggtggctcatgaggggt
gggagagctgacccggcagttaagagagctggctgctcttgcagatgacc
caggtcctcccagcacccacatggtgactcacaactgtctctaattccac
ttctaggagatctggcatcctcacacagacagaacatcaatccacggaaa
aataaaactaaaacaatcattttgctaggcagtggtggtgcacaccttta
atcccagcactcaggaggcagaggcaggcagatctctgtgagtttgaggc
cagcctgctctacagagagagttctaggacagccagggcttcacagagaa
atccctgttcttgaaaaaaccaaaccaaccaaacaaacaaacaaaaaaac
aacaagaaaaaatgtgatgggctcatcagttaggagcactcgttttactt
cttgcaaaggacactagtttcagctcccagaaacccacatagggctccag
agagtctaatgttatcttctggacttctacaggcgcttcatgtacaagga
aggaccttaggtaccaccctcagtaagaacaaatatcaatacaacaaata
ccggagataatttaagccccattcctcctggtaagcgtaaccaagctctt
cagcaatctacccttctgggggaggttagctgtatggaataccaaagaac
tgtcttcagcacacccaagtagctgctcctcgtagcccttggtaaaggaa
aactaagcaggcttccatagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_87410128_87411062
seq2: B6Ng01-221K20.b_48_1002

seq1  GAATTCCCCTCAGATCAGCAGGCGGGGCAGGTTGCTTGGCAGGTAGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCAGATCAGCAGGCGGGGCAGGTTGCTTGGCAGGTAGTGGG  50

seq1  GGCTTGTCCATATCGAGAGCCCAATGGGAAGATCAGCTCAGCTCCAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCCATATCGAGAGCCCAATGGGAAGATCAGCTCAGCTCCAAAAC  100

seq1  ACAGGCTTCCTTTTTGAAGGCATTCACAAAGGCCCTCTAGAGGCATGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTCCTTTTTGAAGGCATTCACAAAGGCCCTCTAGAGGCATGGGA  150

seq1  CTGAATCCCCCCAACCTCCTCCTCTTTGTCTCCACCCACCAGGTTGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCCCCCAACCTCCTCCTCTTTGTCTCCACCCACCAGGTTGATGC  200

seq1  TTGAGTGGCTGGAGGGGCCTGTTTTCTTTCTCTCTAGCCAGCTACCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGGCTGGAGGGGCCTGTTTTCTTTCTCTCTAGCCAGCTACCTCAG  250

seq1  CTGGCTCCTGTGCCTCAGGTGCCTCTCCCAACCCTACCAGTCTTATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCTGTGCCTCAGGTGCCTCTCCCAACCCTACCAGTCTTATTCTG  300

seq1  GTAGGAGGCTTTCTTAATTCCCTCCCTTCCTCACGGTTTTTGCAATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGGCTTTCTTAATTCCCTCCCTTCCTCACGGTTTTTGCAATTTTG  350

seq1  GTTCAAAGGAGAAGTCTGTTTAAGCGGTACAGATTCTCTGTTCCTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGGAGAAGTCTGTTTAAGCGGTACAGATTCTCTGTTCCTCCTTG  400

seq1  GCTTAGTTCACGTTTCCCTGAGTACCACTTTATTCTACTCCTCCTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTCACGTTTCCCTGAGTACCACTTTATTCTACTCCTCCTCCAGC  450

seq1  CAAGTCAGGTCTCCTTTAAAACAAAGGAAGGTGTCTGTAGGTTTGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGGTCTCCTTTAAAACAAAGGAAGGTGTCTGTAGGTTTGTTGGT  500

seq1  AGAGGAGCAAAGTGAATGAGCCTTAGGAGCCAGGTGGGGTGGCAAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCAAAGTGAATGAGCCTTAGGAGCCAGGTGGGGTGGCAAACTCA  550

seq1  AGGTTATGGCCTCCCTGCAGGGTGAGGAGGGCCCCCCCAGCCTGGAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGGCCTCCCTGCAGGGTGAGGAGGGCCCCCCCAGCCTGGAGTAC  600

seq1  ATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTGGTGAAGGAGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTGGTGAAGGAGGAGGA  650

seq1  GAATCTTCAGGTAAGGAGAACAGGAGGCTCATGGTGGGAGGGGC-TTCCT  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATCTTCAGGTAAGGAGAACAGGAGGCTCATGGTGGGAGGGGCTTTCCT  700

seq1  GCCCAGTTTGTGTTCCAGAC-TTTTAAATC-TTTAGAGGATCTACCAGAG  747
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  GCCCAGTTTGTGTTCCAGACTTTTTAAATCTTTTAGAGGATCTACCAGAG  750

seq1  CCC-TGGCTT-CCTCCTCCTGGGCC-TGTGAAGG-GGGTGGGCTCC-TGT  792
      ||| |||||| |||||||||||||| |||||||| ||||||||||| |||
seq2  CCCTTGGCTTCCCTCCTCCTGGGCCTTGTGAAGGTGGGTGGGCTCCTTGT  800

seq1  -ATTTGTCAGTCTGTGTTATTGGAGCCTTT-GGCCTCAGGG-AAGGGGAG  839
       ||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AATTTGTCAGTCTGTGTTATTGGAGCCTTTGGGCCTCAGGGAAAGGGGAG  850

seq1  A-GGCAG-TTTTCCTGCACAGCA-GATGACCAGTGTCCTGA-CTTG-ACT  884
      | ||||| |||||||||||||||  |||||||||||| ||| |||| |||
seq2  AGGGCAGTTTTTCCTGCACAGCATAATGACCAGTGTCTTGACCTTGAACT  900

seq1  -ATCCTGCATCATCTCCCTTTCC-TCA-GGGCTGCTATAGAGCAGGG-CT  930
       ||||||||||||| |||||||| ||| ||||||||||||||||||| ||
seq2  AATCCTGCATCATCCCCCTTTCCTTCAGGGGCTGCTATAGAGCAGGGTCT  950

seq1  GCTGA  935
      |||||
seq2  GCTGA  955