BAC Information

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BAC

Clone NameB6Ng01-221O10
Chromosome11 (Build37)
Map Location 9,376,993 - 9,502,452
singlet/doubletdoublet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221O10.bB6Ng01-221O10.g
ACCGA037066GA037067
length1,1911,181
definitionB6Ng01-221O10.b B6Ng01-221O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,376,993 - 9,378,132)(9,501,273 - 9,502,452)
sequence
gaattctgtgctaaaatcatctggccctcagatttttctttttgtcatgt
ctttgtagggttgggttctttggttgcagcatctacctttatattattgg
caagtgtggtttctgtgaggtccctggcagggagtgcctctctgggtctg
taggtgacataaagggatggagataggataggaggaaaggcagtgtaggg
ccatagcaaagtgtttggggactggggtccacaccaagatatagagtctg
caggaaatagttttaggtaaaaagaggggcttctgcagtccttcttgtaa
caggtcctgcaggctattacaggaataaagggtaagtttggagaggtcta
aaggtctggagagacaggcagggcagtttagtgtggtcaatggaaggtta
tcatagaaagtgtttatgtgagttagtggctgacacaaagaaattgagat
gggttaaaaggaaagcatcggagggtcagtgggaaaagctaaactgagct
tataccaacatgcagaagttccatggaacgccctctccttttcaaatgtt
acattaggtttgccactgtagtataacttataaaattgtttttatatcct
aaatatctctatttgtacttcgtattaacttttattttctccaatatttg
tgtttgtgatttacatatatgtgcttctatgtttctggaaattttcttaa
ttctctctccctttgacctcttttcttaaaaatgttttctttttttatta
atttacacatgctaaaatcttaagctatcagtttattgactacatagagc
attagatcccactaccttcaaaatacaaggctctttcattctaattatgt
tctttaaaggaacagtaaactttgccttgactcatatctctaaatttact
ttttgtcttttgtccagatgcgctttctctccttttacccaattctttaa
caatagctacaaagaaagttaatagagccaatttgcctcagtttgccttt
gggggatggtaccatgaaatctttttcaactgccttgaagggattttttc
tccttttctcaattcgacatgcctgtgaatgtccatatttataaggtcct
aaaatacaaattttgaacttattgtgactccggaagtatttcctttcttg
gacactctctcattcagacaacactgtggtttttttaaaaa

gaattccatctgagtccagcttggtgaaccgatcaatttgtcatctgacc
tgagccagaagggaagttacttgaaggatcatggggaactgaaaggcagt
gaaaagctccaccctatgcacgcatggcaactcatgaagctcctcaacag
agcagtcctagcccagtcagccttcatcgctcacacatcctagaggctcc
atatcacctgcagctgagaggcacgagaaaacaatagctctaatctcaag
tgaggtggtgatgactcccccactcttctacaaaggaatgataagcatct
caatatagttaccatagggcatcacagtaatgttcctttatgatgcctga
ggaaaacagccctagaacaacatagatagatgatctgtatagatactatg
aatcagctagtaccttcatctattgtaaaaataaaaagaatgtgcacgca
catgtgagcacagggatgcacacacactttcataagatttttatttgaaa
gtgaaagagacactagaggcactacaaagagtctgaaacttagaaaacta
catgacaagctaaattttccatgaaaaacttcagattgttttttggcagc
catgctacagaaagggttactttaattcatctaactgagaacttcagggg
tgaacagagaaagattcctgatagaacagtctctcacagaatctaccaag
tgctaatctcatacctcccatatttcaagatccatgtatcagtgtaggca
atggcaaaaaattgccaagtgctcattatgtttcaggcatagatgaccta
gtatactccaaatgttttggctgtgatatacttttgcatcagtctctgaa
gaaagtaatttatctcatttttaacatccaaatcacattgctagtgcata
caaacataagggagtcaaaactcattagaatcagtacataaagcaattga
gttttaaggtaaaataggactgctaagtcataggttgattagccaaagca
gccatgttcttaacagcattcaccaaagagaatgatccagctcagtcaca
ctggaactctttataattaccggtaacataaatgtaaaggaatacgagaa
atacgttgaaccctggagaaaaattagtggccacacgtccactgtgacta
agcacagcttgcaattctgtgtccacacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9376993_9378132
seq2: B6Ng01-221O10.b_48_1238

seq1  GAATTCTGTGCTAAAATCATCTGGCCCTCAGATTTTTCTTTTTGTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTAAAATCATCTGGCCCTCAGATTTTTCTTTTTGTCATGT  50

seq1  CTTTGTAGGGTTGGGTTCTTTGGTTGCAGCATCTACCTTTATATTATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGGGTTGGGTTCTTTGGTTGCAGCATCTACCTTTATATTATTGG  100

seq1  CAAGTGTGGTTTCTGTGAGGTCCCTGGCAGGGAGTGCCTCTCTGGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGTTTCTGTGAGGTCCCTGGCAGGGAGTGCCTCTCTGGGTCTG  150

seq1  TAGGTGACATAAAGGGATGGAGATAGGATAGGAGGAAAGGCAGTGTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGACATAAAGGGATGGAGATAGGATAGGAGGAAAGGCAGTGTAGGG  200

seq1  CCATAGCAAAGTGTTTGGGGACTGGGGTCCACACCAAGATATAGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCAAAGTGTTTGGGGACTGGGGTCCACACCAAGATATAGAGTCTG  250

seq1  CAGGAAATAGTTTTAGGTAAAAAGAGGGGCTTCTGCAGTCCTTCTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATAGTTTTAGGTAAAAAGAGGGGCTTCTGCAGTCCTTCTTGTAA  300

seq1  CAGGTCCTGCAGGCTATTACAGGAATAAAGGGTAAGTTTGGAGAGGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTGCAGGCTATTACAGGAATAAAGGGTAAGTTTGGAGAGGTCTA  350

seq1  AAGGTCTGGAGAGACAGGCAGGGCAGTTTAGTGTGGTCAATGGAAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGGAGAGACAGGCAGGGCAGTTTAGTGTGGTCAATGGAAGGTTA  400

seq1  TCATAGAAAGTGTTTATGTGAGTTAGTGGCTGACACAAAGAAATTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAAGTGTTTATGTGAGTTAGTGGCTGACACAAAGAAATTGAGAT  450

seq1  GGGTTAAAAGGAAAGCATCGGAGGGTCAGTGGGAAAAGCTAAACTGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAAAGGAAAGCATCGGAGGGTCAGTGGGAAAAGCTAAACTGAGCT  500

seq1  TATACCAACATGCAGAAGTTCCATGGAACGCCCTCTCCTTTTCAAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAACATGCAGAAGTTCCATGGAACGCCCTCTCCTTTTCAAATGTT  550

seq1  ACATTAGGTTTGCCACTGTAGTATAACTTATAAAATTGTTTTTATATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGTTTGCCACTGTAGTATAACTTATAAAATTGTTTTTATATCCT  600

seq1  AAATATCTCTATTTGTACTTCGTATTAACTTTTATTTTCTCCAATATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTCTATTTGTACTTCGTATTAACTTTTATTTTCTCCAATATTTG  650

seq1  TGTTTGTGATTTACATATATGTGCTTCTATGTTTCTGGAAA-TTTCTTAA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTTTGTGATTTACATATATGTGCTTCTATGTTTCTGGAAATTTTCTTAA  700

seq1  TTCTCTCTCCCTTTGACCTCTTTTCTTAAAAATGTTTTC-TTTTTTATTA  748
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTCTCTCCCTTTGACCTCTTTTCTTAAAAATGTTTTCTTTTTTTATTA  750

seq1  ATTTACACATGCTAAAATC-TAAGCTATCAGTTTATTGACTACATAGAGC  797
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTACACATGCTAAAATCTTAAGCTATCAGTTTATTGACTACATAGAGC  800

seq1  ATTAGAT-CCACTACCTTCAAAATACAAGGCTCTTTCATTCTAATTATGT  846
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATCCCACTACCTTCAAAATACAAGGCTCTTTCATTCTAATTATGT  850

seq1  TC-TTAAAGGAACAGTAAAC-TTGCC-TGACTCATATCTCTAAA-TTAC-  891
      || ||||||||||||||||| ||||| ||||||||||||||||| |||| 
seq2  TCTTTAAAGGAACAGTAAACTTTGCCTTGACTCATATCTCTAAATTTACT  900

seq1  -TTTGTC-TTTGTCCAGATGCGC-TTCTCTCC-TTTACCCA--TC-TTAA  934
       |||||| ||||||||||||||| |||||||| ||||||||  || ||||
seq2  TTTTGTCTTTTGTCCAGATGCGCTTTCTCTCCTTTTACCCAATTCTTTAA  950

seq1  CAATAGCTAC-AAGAA--GTAATAGAG-CAATT--GCTCAG-TTGC--TT  975
      |||||||||| |||||   |||||||| |||||   ||||| ||||  ||
seq2  CAATAGCTACAAAGAAAGTTAATAGAGCCAATTTGCCTCAGTTTGCCTTT  1000

seq1  TGGGGAT-GTAACATG-AATC-TTTTCAACTG-CTTGTAGTGA-TTTTTC  1020
       |||||| ||| |||| |||| |||||||||| |||| || || ||||||
seq2  GGGGGATGGTACCATGAAATCTTTTTCAACTGCCTTGAAGGGATTTTTTC  1050

seq1  TCC-TTTCTCATTTTGTACATG-CTGTG-ATGTCCATA--TAATAGGTCC  1065
      ||| ||||||| || | ||||| ||||| |||||||||  ||  ||||||
seq2  TCCTTTTCTCAATTCG-ACATGCCTGTGAATGTCCATATTTATAAGGTCC  1099

seq1  TAA---ATAAATATTG-ATTTATTGAATCT---GAAGTATTTC--TTCTT  1106
      |||   | |||| ||| | ||||||   ||   ||||||||||  |||||
seq2  TAAAATACAAATTTTGAACTTATTGTGACTCCGGAAGTATTTCCTTTCTT  1149

seq1  G---ACTCTCTCATACAGAC-ACA-TGTG---TTTTTAAAAA  1140
      |   |||||||||| ||||| ||| ||||   ||||||||||
seq2  GGACACTCTCTCATTCAGACAACACTGTGGTTTTTTTAAAAA  1191


seq1: chr11_9501273_9502452
seq2: B6Ng01-221O10.g_67_1247 (reverse)

seq1  TCTGT---GACACAGAAATAGCAAGCTGTGCTTTAGTCACAGTTTGACGT  47
      |||||   ||||||| ||| ||||||||||| |||||||||| | |||||
seq2  TCTGTGTGGACACAG-AATTGCAAGCTGTGC-TTAGTCACAG-TGGACGT  47

seq1  TGGTGGCAACTAAATTTTTCT-CAGTG-TCAACTGTATTTCTCCGTATTC  95
        ||||| ||| ||||||||| ||| | ||||| |||||||| |||||||
seq2  --GTGGCCACT-AATTTTTCTCCAGGGTTCAAC-GTATTTCT-CGTATTC  92

seq1  CTTTTTAACATTTATGGTAACGGTAATATTAAAGAG-TCCAGTGTGACTG  144
      ||||   ||||||||| || |||||||  ||||||| |||||||||||||
seq2  CTTT---ACATTTATGTTACCGGTAATTATAAAGAGTTCCAGTGTGACTG  139

seq1  AGCT-GATCATTCTCTTTGGTG-ATGCTGTTAAGAACATGGCTGCTTT-G  191
      |||| ||||||||||||||||| ||||||||||||||||||||||||| |
seq2  AGCTGGATCATTCTCTTTGGTGAATGCTGTTAAGAACATGGCTGCTTTGG  189

seq1  CTAATC-ACCTATGACTTAGCAGTCCTATTTTACC-TAAAACTC-ATTGC  238
      |||||| |||||||||||||||||||||||||||| |||||||| |||||
seq2  CTAATCAACCTATGACTTAGCAGTCCTATTTTACCTTAAAACTCAATTGC  239

seq1  TTTATGTACTGATTCTAATGAGTTTTGACT-CCTTATGTTTGTATGCACT  287
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTATGTACTGATTCTAATGAGTTTTGACTCCCTTATGTTTGTATGCACT  289

seq1  AGCAATGTGATTTGGATGTTAAAAATGAGATAAAATTACTTTCTTCAGAG  337
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCAATGTGATTTGGATGTTAAAAATGAGAT-AAATTACTTTCTTCAGAG  338

seq1  ACTGATGCAAAAGTATATCACAGCCAAAACATTTGGAGTATACTAGGTCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCAAAAGTATATCACAGCCAAAACATTTGGAGTATACTAGGTCA  388

seq1  TCTATGCCTGAAACATAATGAGCACTTGGCAATTTTTTGCCATTGCCTAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCTGAAACATAATGAGCACTTGGCAATTTTTTGCCATTGCCTAC  438

seq1  ACTGATACATGGATCTTGAAATATGGGAGGTATGAGATTAGCACTTGGTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACATGGATCTTGAAATATGGGAGGTATGAGATTAGCACTTGGTA  488

seq1  GATTCTGTGAGAGACTGTTCTATCAGGAATCTTTCTCTGTTCACCCCTGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGAGAGACTGTTCTATCAGGAATCTTTCTCTGTTCACCCCTGA  538

seq1  AGTTCTCAGTTAGATGAATTAAAGTAACCCTTTCTGTAGCATGGCTGCCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGTTAGATGAATTAAAGTAACCCTTTCTGTAGCATGGCTGCCA  588

seq1  AAAAACAATCTGAAGTTTTTCATGGAAAATTTAGCTTGTCATGTAGTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATCTGAAGTTTTTCATGGAAAATTTAGCTTGTCATGTAGTTTT  638

seq1  CTAAGTTTCAGACTCTTTGTAGTGCCTCTAGTGTCTCTTTCACTTTCAAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTCAGACTCTTTGTAGTGCCTCTAGTGTCTCTTTCACTTTCAAA  688

seq1  TAAAAATCTTATGAAAGTGTGTGTGCATCCCTGTGCTCACATGTGCGTGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTTATGAAAGTGTGTGTGCATCCCTGTGCTCACATGTGCGTGC  738

seq1  ACATTCTTTTTATTTTTACAATAGATGAAGGTACTAGCTGATTCATAGTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTTTATTTTTACAATAGATGAAGGTACTAGCTGATTCATAGTA  788

seq1  TCTATACAGATCATCTATCTATGTTGTTCTAGGGCTGTTTTCCTCAGGCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGATCATCTATCTATGTTGTTCTAGGGCTGTTTTCCTCAGGCA  838

seq1  TCATAAAGGAACATTACTGTGATGCCCTATGGTAACTATATTGAGATGCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGAACATTACTGTGATGCCCTATGGTAACTATATTGAGATGCT  888

seq1  TATCATTCCTTTGTAGAAGAGTGGGGGAGTCATCACCACCTCACTTGAGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCCTTTGTAGAAGAGTGGGGGAGTCATCACCACCTCACTTGAGA  938

seq1  TTAGAGCTATTGTTTTCTCGTGCCTCTCAGCTGCAGGTGATATGGAGCCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTATTGTTTTCTCGTGCCTCTCAGCTGCAGGTGATATGGAGCCT  988

seq1  CTAGGATGTGTGAGCGATGAAGGCTGACTGGGCTAGGACTGCTCTGTTGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGTGTGAGCGATGAAGGCTGACTGGGCTAGGACTGCTCTGTTGA  1038

seq1  GGAGCTTCATGAGTTGCCATGCGTGCATAGGGTGGAGCTTTTCACTGCCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCATGAGTTGCCATGCGTGCATAGGGTGGAGCTTTTCACTGCCT  1088

seq1  TTCAGTTCCCCATGATCCTTCAAGTAACTTCCCTTCTGGCTCAGGTCAGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCCCATGATCCTTCAAGTAACTTCCCTTCTGGCTCAGGTCAGA  1138

seq1  TGACAAATTGATCGGTTCACCAAGCTGGACTCAGATGGAATTC  1180
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATTGATCGGTTCACCAAGCTGGACTCAGATGGAATTC  1181


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