BAC Information

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BAC

Clone NameB6Ng01-222M16
Chromosome11 (Build37)
Map Location 105,506,551 - 105,643,257
singlet/doubletdoublet
Overlap geneTanc2, LOC667737
Upstream geneItgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807
Downstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222M16.bB6Ng01-222M16.g
ACCGA037712GA037713
length1,122940
definitionB6Ng01-222M16.b B6Ng01-222M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,506,551 - 105,507,686)(105,642,316 - 105,643,257)
sequence
gaattccagcacaattaacagcatttgctgtgaaggttgctggtttgaaa
agaaaattcatttataaagagatctcttcaagtagcaactagtcaggtgt
aagggttgtgttataccacccgagagacctcattcctttcccaagttatt
tcccgggaagctcaaacaagactgttaactctgtttacagtgaggatact
ttaacttccctgatatctagacttttactttgtcaattgtagtcttggtg
ggtgtccctcaggaaacacctagtgatctcatttagttagatgtcttagg
aacactttgaagatagtaacttcaaacctcaccaaaatcctgtgtgactg
ctgttaaaaataaatgagctatgtctcttggagaagcccttgttcgtatg
gcttgtctttccttctgagtggttttctcatccttatactcaaactctgt
attaaaaataccattttaaaaaactaactctgcttcatagatagatgagt
ttttgaaactctattctatataaaagccacaagtccttgcttggtctaag
gcagggtctttagaaatctaggggaattcctcaggcagctccacctcctg
cctctgtttcccaaaacatggatgcaatgagcacctactatatgaagtat
tgaagtactgagtattcattcagactggaaagaaatgtagcagtttttgg
aggaggtggtgattattattgtgtcctcggagtaagctagccagttccac
aagtgggggacgaagtttgaggcataggtaatgcataaatgcatggaatc
gtaagaaagtttgacacatttagtgaaggccccttgataatctggttggc
tgacatttcttatgtttttttttttaattatttagtccaaatagtggaac
ataactaccaacatctaatagtttaggaatcaaaagggagatttgggcca
aattcatagacccattgtaacatgacggttgatgaattaactctggtcta
acttagatctggtatatccctagatcaggctagtatactttgctagaatt
aagtttgtgatatctcttttggataagtgccatcttaatgaatcagctgt
cgagaaaggctataattgtaga
gaattctcttgatcaaacgcaggtcattcttgtaagcacttactgactaa
gccatctcttcagtcctatttgacttactgaaatttttatttccaatatt
cttgtctgttgttttttttttttccactctcacttcgaaatctttttgct
aatatttccacttagtgagtctgttgccctagtcttcagttgacttcatt
cattactttgtttcttttaatcttctttgaggttactgattatttttaaa
atgagacttctcaattctttggcattttgattatttaagtatctttagat
tacatttttaaagagttacaaacgtcaggagtgaggttaccttttcagat
ttctcttgtttctgttgcactgatttgtatgaatattcttttgatactgt
atggggtcttcttagtgagcatcttttgcttgaggaacccaaaccaccca
gagggcaaaacaggctgctgcaatggcagcaccatccaaacaaatcacaa
ataggaaggaaatttaaaaaataaattaaagacaactactacaccatgaa
tgaccacagtaaagtggaagaaataatgtagcataaattatgaattaaaa
atgcaataaaaaataataaaataaaagaggaggcaagaagggggggaagg
agcttaaagaaagtaggattaatgcaaaaaatgaaggagctagctctcta
ggaggaacaacaatatgaactaaccagtaaccccagagctccctgagact
aaaccataaaccaaagaaaacacatggtgggactcatggctccagctgca
tatgtagcagaggatggcctagtcggtcatcaatgggaggagaggccctt
ggtcctgtgaaggttctatgtcccagtataggggaatgccagggccagga
agcagagtgggtgggttggtgagcagggaagtgggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105506551_105507686
seq2: B6Ng01-222M16.b_45_1166

seq1  GAATTCCAGCACAATTAACAGCATTTGCTGTGAAGGTTGCTGGTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACAATTAACAGCATTTGCTGTGAAGGTTGCTGGTTTGAAA  50

seq1  AGAAAATTCATTTATAAAGAGATCTCTTCAAGTAGCAACTAGTCAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCATTTATAAAGAGATCTCTTCAAGTAGCAACTAGTCAGGTGT  100

seq1  AAGGGTTGTGTTATACCACCCGAGAGACCTCATTCCTTTCCCAAGTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGTGTTATACCACCCGAGAGACCTCATTCCTTTCCCAAGTTATT  150

seq1  TCCCGGGAAGCTCAAACAAGACTGTTAACTCTGTTTACAGTGAGGATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGGAAGCTCAAACAAGACTGTTAACTCTGTTTACAGTGAGGATACT  200

seq1  TTAACTTCCCTGATATCTAGACTTTTACTTTGTCAATTGTAGTCTTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCCCTGATATCTAGACTTTTACTTTGTCAATTGTAGTCTTGGTG  250

seq1  GGTGTCCCTCAGGAAACACCTAGTGATCTCATTTAGTTAGATGTCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCTCAGGAAACACCTAGTGATCTCATTTAGTTAGATGTCTTAGG  300

seq1  AACACTTTGAAGATAGTAACTTCAAACCTCACCAAAATCCTGTGTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTGAAGATAGTAACTTCAAACCTCACCAAAATCCTGTGTGACTG  350

seq1  CTGTTAAAAATAAATGAGCTATGTCTCTTGGAGAAGCCCTTGTTCGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAAATAAATGAGCTATGTCTCTTGGAGAAGCCCTTGTTCGTATG  400

seq1  GCTTGTCTTTCCTTCTGAGTGGTTTTCTCATCCTTATACTCAAACTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTTCCTTCTGAGTGGTTTTCTCATCCTTATACTCAAACTCTGT  450

seq1  ATTAAAAATACCATTTTAAAAAACTAACTCTGCTTCATAGATAGATGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATACCATTTTAAAAAACTAACTCTGCTTCATAGATAGATGAGT  500

seq1  TTTTGAAACTCTATTCTATATAAAAGCCACAAGTCCTTGCTTGGTCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACTCTATTCTATATAAAAGCCACAAGTCCTTGCTTGGTCTAAG  550

seq1  GCAGGGTCTTTAGAAATCTAGGGGAATTCCTCAGGCAGCTCCACCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCTTTAGAAATCTAGGGGAATTCCTCAGGCAGCTCCACCTCCTG  600

seq1  CCTCTGTTTCCCAAAACATGGATGCAATGAGCACCTACTATATGAAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTCCCAAAACATGGATGCAATGAGCACCTACTATATGAAGTAT  650

seq1  TGAAGTACTGAGTATTCATTCAGACTGGAAAGAAATGTAGCAGTTTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTACTGAGTATTCATTCAGACTGGAAAGAAATGTAGCAGTTTTTGG  700

seq1  AGGAGGTGGTGATTATTATTGTGTCCTCGGAGTAAGCTAGCCAGTTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGTGATTATTATTGTGTCCTCGGAGTAAGCTAGCCAGTTCCAC  750

seq1  AAGTGGGGGACGAAGTTTGAGGCATAGGTAATGCATAAATGCATGGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGGACGAAGTTTGAGGCATAGGTAATGCATAAATGCATGGAATC  800

seq1  GTAAGAAAGTTTGACACATTTAGTGAAGGCCCCTTGATAATCTGGTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAGTTTGACACATTTAGTGAAGGCCCCTTGATAATCTGGTTGGC  850

seq1  TGACATTTCTTATG-TTTTTTTTTTAATTATTTAGTCCAAATAGTGGAAC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGACATTTCTTATGTTTTTTTTTTTAATTATTTAGTCCAAATAGTGGAAC  900

seq1  ATAACTACCAACATCTAATAGTTTAGGAATCAAAAGGGAGATTTGGGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACCAACATCTAATAGTTTAGGAATCAAAAGGGAGATTTGGGCCA  950

seq1  AATTCATAAGACCCATTGTAACATGACGGTTGATGAATTAACTCTGGTCT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAT-AGACCCATTGTAACATGACGGTTGATGAATTAACTCTGGTCT  999

seq1  AACTTAGATCTGGTATTAATCCTTAGATCAAGCTAGTTATACTTTTGCTA  1049
      ||||||||||||||||  |||| ||||||| ||||| ||||| |||||||
seq2  AACTTAGATCTGGTAT--ATCCCTAGATCAGGCTAG-TATAC-TTTGCTA  1045

seq1  GGAATTAAGTTTGTGATTATCCTCTTTTGGATAAGGTGCCAATTCTAATG  1099
       ||||||||||||||| ||| ||||||||||||| ||||| ||  |||||
seq2  -GAATTAAGTTTGTGA-TAT-CTCTTTTGGATAA-GTGCC-ATCTTAATG  1090

seq1  AAAATCAGCTGTCGAAGAGAGGCTATAAATTTGTAGA  1136
        |||||||||||| ||| |||||||||  |||||||
seq2  --AATCAGCTGTCG-AGAAAGGCTATAA--TTGTAGA  1122

seq1: chr11_105642316_105643257
seq2: B6Ng01-222M16.g_69_1008 (reverse)

seq1  TCTCCCCCACTTCCCCTGCTCACCAACCCACCCACTCCTGCTTCCTGGCC  50
      | |||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TTTCCCCCACTT-CCCTGCTCACCAACCCACCCACT-CTGCTTCCTGGCC  48

seq1  CTGGCATTCCCCTATACTGGGACATAGAACCTTCACAGGACCAAGGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTCCCCTATACTGGGACATAGAACCTTCACAGGACCAAGGGCCT  98

seq1  CTCCTCCCATTGATGACCGACTAGGCCATCCTCTGCTACATATGCAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCATTGATGACCGACTAGGCCATCCTCTGCTACATATGCAGCTG  148

seq1  GAGCCATGAGTCCCACCATGTGTTTTCTTTGGTTTATGGTTTAGTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGAGTCCCACCATGTGTTTTCTTTGGTTTATGGTTTAGTCTCAG  198

seq1  GGAGCTCTGGGGTTACTGGTTAGTTCATATTGTTGTTCCTCCTAGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTGGGGTTACTGGTTAGTTCATATTGTTGTTCCTCCTAGAGAGC  248

seq1  TAGCTCCTTCATTTTTTGCATTAATCCTACTTTCTTTAAGCTCCTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTCATTTTTTGCATTAATCCTACTTTCTTTAAGCTCCTTCCCC  298

seq1  CCCTTCTTGCCTCCTCTTTTATTTTATTATTTTTTATTGCATTTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTGCCTCCTCTTTTATTTTATTATTTTTTATTGCATTTTTAATT  348

seq1  CATAATTTATGCTACATTATTTCTTCCACTTTACTGTGGTCATTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTATGCTACATTATTTCTTCCACTTTACTGTGGTCATTCATGGT  398

seq1  GTAGTAGTTGTCTTTAATTTATTTTTTAAATTTCCTTCCTATTTGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTTGTCTTTAATTTATTTTTTAAATTTCCTTCCTATTTGTGATT  448

seq1  TGTTTGGATGGTGCTGCCATTGCAGCAGCCTGTTTTGCCCTCTGGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGATGGTGCTGCCATTGCAGCAGCCTGTTTTGCCCTCTGGGTGGT  498

seq1  TTGGGTTCCTCAAGCAAAAGATGCTCACTAAGAAGACCCCATACAGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCCTCAAGCAAAAGATGCTCACTAAGAAGACCCCATACAGTATC  548

seq1  AAAAGAATATTCATACAAATCAGTGCAACAGAAACAAGAGAAATCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATTCATACAAATCAGTGCAACAGAAACAAGAGAAATCTGAAA  598

seq1  AGGTAACCTCACTCCTGACGTTTGTAACTCTTTAAAAATGTAATCTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACCTCACTCCTGACGTTTGTAACTCTTTAAAAATGTAATCTAAAG  648

seq1  ATACTTAAATAATCAAAATGCCAAAGAATTGAGAAGTCTCATTTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAATAATCAAAATGCCAAAGAATTGAGAAGTCTCATTTTAAAAA  698

seq1  TAATCAGTAACCTCAAAGAAGATTAAAAGAAACAAAGTAATGAATGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTAACCTCAAAGAAGATTAAAAGAAACAAAGTAATGAATGAAGT  748

seq1  CAACTGAAGACTAGGGCAACAGACTCACTAAGTGGAAATATTAGCAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAGACTAGGGCAACAGACTCACTAAGTGGAAATATTAGCAAAAA  798

seq1  GATTTCGAAGTGAGAGTGGAAAAAAAAAAAACAACAGACAAGAATATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCGAAGTGAGAGTGGAAAAAAAAAAAACAACAGACAAGAATATTGG  848

seq1  AAATAAAAATTTCAGTAAGTCAAATAGGACTGAAGAGATGGCTTAGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATTTCAGTAAGTCAAATAGGACTGAAGAGATGGCTTAGTCAG  898

seq1  TAAGTGCTTACAAGAATGACCTGCGTTTGATCAAGAGAATTC  942
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTTACAAGAATGACCTGCGTTTGATCAAGAGAATTC  940