BAC Information

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BAC

Clone NameB6Ng01-222N12
Chromosome11 (Build37)
Map Location 38,851,311 - 38,985,251
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222N12.bB6Ng01-222N12.g
ACCGA037750GA037751
length1,1081,122
definitionB6Ng01-222N12.b B6Ng01-222N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,984,139 - 38,985,251)(38,851,311 - 38,852,435)
sequence
gaattctctactacctgtgaacaaaatgtatggcattttcaccaacacaa
tcttacgttcagattatgatgagctgccaagatgattatcagtaaactgc
attaatttgggatattaagagtctccttgatcagtaacttatagagagta
ttttctgtctgagacttgtattttatttaataatccatagctttagggag
aaacactgtccattaactgtttaactgttcaaacacccttttccatgtat
tttgaagtgtttgtcacctaaaagtaaataagttaaacaggaatcagcca
atatgtaatgaacaagaaatcacattaatggcttattcaccttcgaattc
atgcatctattctggctttcaaaagatgatgcaacaaaaccctaaagatg
tggcttagcaaaaaggtatttagaacctaaacaaacatgttaaacaacag
gatagaagaaaatgtaaattaataatgataaaactggagtgttctgatgg
aaaaagtaaacaggaggcagaaacagtttgttcatgtaggaagaaagata
caatgtctaataaaccattaaaatgaaatactggacaggatacactgtat
tacagtaagaaaaattaaagaatttaatttaattcagcattaacagagtt
gtggactaggaaataaatcagtgagcccaaacgaacaggaagagaaatga
caaaactgatgtgaaaggcaaaagacatgttcagaaattgagacacaaga
aagaagagacttgtgggatatttcgaaactctacaacatggaaaagaaag
aaactgttatcagtagaagaggaaagaaagagagagagatggagtattta
aaagaggatactcatggaattttccagaagagtggcaaatcccaaggggc
agaagcacaaacagatcaaataagaaatttgataaaacttgattatctta
ccatgactacactgaacccaagttgctaagagactacgatatacagaaac
ataaaagaacccagatggagaaatactatcttgtattggaaaaaaaacag
gaatgagggctcatttttctatctgtgacaggatggagagtgggttagac
tatgtaga

gaattctttcagatgaagaaaaaatacaatataaagctaaatgtatttat
ttaataaataataattattattgacacaattctaaaggccagttgcttta
tttacatgtttcataattataagttctttgcatctccagagaaacataag
agtgagaattatttgttatagggaagagagctaagagctaactacttgct
gtgtatgcatgagaatatcgatttgtattcccaattctcatgaaaaatac
taggcttgaccctgcatgatagtaacttcaaagcacagacttggaataga
agcagaataatacaggtcctgcctggcagtcatcctaaccagaaaatatc
gcctccaggttcagtaacaggtcttttatgaatgtaataagtttaaatgt
catagtagacaacgtttaaaatccttgctctggcctccaagttcagatgg
acacaccttctcataatatgtaggtaacacacacacacacacacacacac
acacacacacacacacagtaagaattaatgttatgtgccagggaactgat
gcacaaagagatgtgataggcccccacaatacatttgaactccagaaact
gctaacttagttcttaccaggcattaataatatccagattttacttttaa
ggctgctatggatcaagtacacttgtttatttctataaaactaacacata
ttttgaattcttttttctataaacatgcagtcagacctcatgtgagaaag
accatcagttcctttatttgttcatgactctaattttctataagtagact
taagtttacattttatagtcctacttcatgaaatgcacttgttaaaccca
gtatttctacttaactttttttttttttttttttggctaaaatacaatag
gttaggtattgctgagtcattttttcttattaattcattctattttctga
ggatcttaataacgggccaatggtttctcttggattagagtgttgctcct
taataaagctgggaatttactggactatcgtacatatgagagtctcttga
gataaaagcaaagcttgcctttgtctcaactgtgcctccacatggaattg
acaatacatgtacagaaccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38984139_38985251
seq2: B6Ng01-222N12.b_45_1152 (reverse)

seq1  TCTACATAGTCT-ACCCACTTCTCCATTCCCTGTCACAGATAAGGAAAAA  49
      |||||||||||| |||||| |||||||  |||||||||||||  ||||||
seq2  TCTACATAGTCTAACCCAC-TCTCCAT--CCTGTCACAGATA--GAAAAA  45

seq1  TGAGCCCTCATT-CTG-TTTTTTTCCAATACAAGATAAGTA-TTCTCCAT  96
      |||||||||||| ||| ||||||||||||||||||| |||| ||||||||
seq2  TGAGCCCTCATTCCTGTTTTTTTTCCAATACAAGAT-AGTATTTCTCCAT  94

seq1  CTGGGTTCTTTTATGGTTTTCTGTATATCGTAGTCTCTTAGCAACTTGGG  146
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CTGGGTTCTTTTATG--TTTCTGTATATCGTAGTCTCTTAGCAACTTGGG  142

seq1  TTCAGTGTAGTCATGGTAAGATAATCAAGTTTTATCAAATTTCTTATTTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTAGTCATGGTAAGATAATCAAGTTTTATCAAATTTCTTATTTG  192

seq1  ATCTGTTTTGTGCTTCTGCCCCTTGGGATTTGCCACTCTTCTGGAAAATT  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTG-TTTGTGCTTCTGCCCCTTGGGATTTGCCACTCTTCTGGAAAATT  241

seq1  CCATGAGTATCCTCTTTTAAATACTCCATCTCTCTCTCTTTCTTTCCTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTATCCTCTTTTAAATACTCCATCTCTCTCTCTTTCTTTCCTCT  291

seq1  TCTACTGATAACAGTTTCTTTCTTTTCCATGTTGTAGAGTTTCGAAATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGATAACAGTTTCTTTCTTTTCCATGTTGTAGAGTTTCGAAATAT  341

seq1  CCCACAAGTCTCTTCTTTCTTGTGTCTCAATTTCTGAACATGTCTTTTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGTCTCTTCTTTCTTGTGTCTCAATTTCTGAACATGTCTTTTGC  391

seq1  CTTTCACATCAGTTTTGTCATTTCTCTTCCTGTTCGTTTGGGCTCACTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACATCAGTTTTGTCATTTCTCTTCCTGTTCGTTTGGGCTCACTGA  441

seq1  TTTATTTCCTAGTCCACAACTCTGTTAATGCTGAATTAAATTAAATTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCTAGTCCACAACTCTGTTAATGCTGAATTAAATTAAATTCTT  491

seq1  TAATTTTTCTTACTGTAATACAGTGTATCCTGTCCAGTATTTCATTTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTTACTGTAATACAGTGTATCCTGTCCAGTATTTCATTTTAA  541

seq1  TGGTTTATTAGACATTGTATCTTTCTTCCTACATGAACAAACTGTTTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATTAGACATTGTATCTTTCTTCCTACATGAACAAACTGTTTCTG  591

seq1  CCTCCTGTTTACTTTTTCCATCAGAACACTCCAGTTTTATCATTATTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTTTACTTTTTCCATCAGAACACTCCAGTTTTATCATTATTAAT  641

seq1  TTACATTTTCTTCTATCCTGTTGTTTAACATGTTTGTTTAGGTTCTAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTCTTCTATCCTGTTGTTTAACATGTTTGTTTAGGTTCTAAAT  691

seq1  ACCTTTTTGCTAAGCCACATCTTTAGGGTTTTGTTGCATCATCTTTTGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTGCTAAGCCACATCTTTAGGGTTTTGTTGCATCATCTTTTGAA  741

seq1  AGCCAGAATAGATGCATGAATTCGAAGGTGAATAAGCCATTAATGTGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATAGATGCATGAATTCGAAGGTGAATAAGCCATTAATGTGATT  791

seq1  TCTTGTTCATTACATATTGGCTGATTCCTGTTTAACTTATTTACTTTTAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCATTACATATTGGCTGATTCCTGTTTAACTTATTTACTTTTAG  841

seq1  GTGACAAACACTTCAAAATACATGGAAAAGGGTGTTTGAACAGTTAAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAACACTTCAAAATACATGGAAAAGGGTGTTTGAACAGTTAAACA  891

seq1  GTTAATGGACAGTGTTTCTCCCTAAAGCTATGGATTATTAAATAAAATAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGACAGTGTTTCTCCCTAAAGCTATGGATTATTAAATAAAATAC  941

seq1  AAGTCTCAGACAGAAAATACTCTCTATAAGTTACTGATCAAGGAGACTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAGACAGAAAATACTCTCTATAAGTTACTGATCAAGGAGACTCT  991

seq1  TAATATCCCAAATTAATGCAGTTTACTGATAATCATCTTGGCAGCTCATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCCAAATTAATGCAGTTTACTGATAATCATCTTGGCAGCTCATC  1041

seq1  ATAATCTGAACGTAAGATTGTGTTGGTGAAAATGCCATACATTTTGTTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGAACGTAAGATTGTGTTGGTGAAAATGCCATACATTTTGTTCA  1091

seq1  CAGGTAGTAGAGAATTC  1113
      |||||||||||||||||
seq2  CAGGTAGTAGAGAATTC  1108


seq1: chr11_38851311_38852435
seq2: B6Ng01-222N12.g_70_1191

seq1  GAATTCTTTCAGATGAAGAAAAAATACAATATAAAGCTAAATGTATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGATGAAGAAAAAATACAATATAAAGCTAAATGTATTTAT  50

seq1  TTAATAAATAATAATTATTATTGACACAATTCTAAAGGCCAGTTGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATAATAATTATTATTGACACAATTCTAAAGGCCAGTTGCTTTA  100

seq1  TTTACATGTTTCATAATTATAAGTTCTTTGCATCTCCAGAGAAACATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTTCATAATTATAAGTTCTTTGCATCTCCAGAGAAACATAAG  150

seq1  AGTGAGAATTATTTGTTATAGGGAAGAGAGCTAAGAGCTAACTACTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAATTATTTGTTATAGGGAAGAGAGCTAAGAGCTAACTACTTGCT  200

seq1  GTGTATGCATGAGAATATCGATTTGTATTCCCAATTCTCATGAAAAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCATGAGAATATCGATTTGTATTCCCAATTCTCATGAAAAATAC  250

seq1  TAGGCTTGACCCTGCATGATAGTAACTTCAAAGCACAGACTTGGAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGACCCTGCATGATAGTAACTTCAAAGCACAGACTTGGAATAGA  300

seq1  AGCAGAATAATACAGGTCCTGCCTGGCAGTCATCCTAACCAGAAAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATAATACAGGTCCTGCCTGGCAGTCATCCTAACCAGAAAATATC  350

seq1  GCCTCCAGGTTCAGTAACAGGTCTTTTATGAATGTAATAAGTTTAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGGTTCAGTAACAGGTCTTTTATGAATGTAATAAGTTTAAATGT  400

seq1  CATAGTAGACAACGTTTAAAATCCTTGCTCTGGCCTCCAAGTTCAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAGACAACGTTTAAAATCCTTGCTCTGGCCTCCAAGTTCAGATGG  450

seq1  ACACACCTTCTCATAATATGTAGGTAACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTTCTCATAATATGTAGGTAACACACACACACACACACACACAC  500

seq1  ACACACACACACACACAGTAAGAATTAATGTTATGTGCCAGGGAACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAGTAAGAATTAATGTTATGTGCCAGGGAACTGAT  550

seq1  GCACAAAGAGATGTGATAGGCCCCCACAATACATTTGAACTCCAGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGAGATGTGATAGGCCCCCACAATACATTTGAACTCCAGAAACT  600

seq1  GCTAACTTAGTTCTTACCAGGCATTAATAATATCCAGATTTTACTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTAGTTCTTACCAGGCATTAATAATATCCAGATTTTACTTTTAA  650

seq1  GGCTGCTATGGATCAAGTACACTTGTTTATTTCTATAAAACTAACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTATGGATCAAGTACACTTGTTTATTTCTATAAAACTAACACATA  700

seq1  TTTTGAATTCTTTTTTCTATAAACATGCAGTCAGACCTCATGTGAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTCTTTTTTCTATAAACATGCAGTCAGACCTCATGTGAGAAAG  750

seq1  ACCATCAGTTCCTTTATTTGTTCATGACTCTAATTTTCTATAAGTAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGTTCCTTTATTTGTTCATGACTCTAATTTTCTATAAGTAGACT  800

seq1  TAAGTTTACATTTTATAGTCCTACTTCATGAAATGCACTTGTTAAACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTACATTTTATAGTCCTACTTCATGAAATGCACTTGTTAAACCCA  850

seq1  GTATTTCTACTTAAC--TTTTTTTTTTTTTTTTTGGCT-AAATACAATAG  897
      |||||||||||||||  ||||||||||||||||||||| |||||||||||
seq2  GTATTTCTACTTAACTTTTTTTTTTTTTTTTTTTGGCTAAAATACAATAG  900

seq1  GTTAGGTATTGCTGAGTCATTTTTTCTTATTAATTCATTCTA-TTTCTGA  946
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTAGGTATTGCTGAGTCATTTTTTCTTATTAATTCATTCTATTTTCTGA  950

seq1  GGATCTTAATAAC-GGCCAATGGTTTCTCTTGGA-TAGAGTGTTGCTCCT  994
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GGATCTTAATAACGGGCCAATGGTTTCTCTTGGATTAGAGTGTTGCTCCT  1000

seq1  TAATTAAAGCTGGGAATTTACTGGCCTAATCGTACATATGAAGAGTCCTC  1044
      ||| |||||||||||||||||||| || |||||||||||| ||||||   
seq2  TAA-TAAAGCTGGGAATTTACTGGACT-ATCGTACATATG-AGAGTC--T  1045

seq1  CTTGAGATAAAAGCAAAGCCTTGCTTTGTCTCAACTTGTTGCCTCACAAC  1094
      ||||||||||||||||||| |  |||||||||||||   |||||  | ||
seq2  CTTGAGATAAAAGCAAAGCTTGCCTTTGTCTCAACT--GTGCCT--CCAC  1091

seq1  ATGGAAATGACAATACATTGTACAG-ACCACC  1125
      |||||| |||||||||| ||||||| ||||||
seq2  ATGGAATTGACAATACA-TGTACAGAACCACC  1122


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