BAC Information

Click to search

BAC

Clone NameB6Ng01-223B06
Chromosome11 (Build37)
Map Location 112,197,738 - 112,384,601
singlet/doubletdoublet
Overlap geneEG668396, EG667038
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
Downstream geneLOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik, Slc39a11
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223B06.bB6Ng01-223B06.g
ACCGA037921GA037922
length987931
definitionB6Ng01-223B06.b B6Ng01-223B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,197,738 - 112,198,720)(112,383,679 - 112,384,601)
sequence
gaattcatggagttttctagtctatggtaccatggaaagaaaagcagaaa
ctagagcccccagtcataggcttttcaatagagggcaactcatcccactt
tacaattccaagctccagttgattaatctgcatatctgcccagtgttttc
aactactggttaaactactctgtgtttcagagtggtgtgccaccatggtc
cctcacagttggagacaacataaacactgctttgcaaacaaacctaattc
aaagcttgatccaaaactaaaacttagatatgccattttaatgttctggg
ttctctcaaaataggaagtaggatttttgtcatgaatccatgaaaactca
atcatttgagatatttgcattcgaaatcctcctggttcgttccattccat
tccacagagttaatatcttcacgatcatcattacttaaaaaaaaccactt
agggaagtaaaacatatttatggtagtatttatggtggtaagggcaagcc
ctgtgtttacacagaggctgaaaagatcctgtgtgatcataaagcttaga
gactgcatttattctggcatcaagtagaatgtgcgactagaactgaagat
tatcatcttaagctaagcaagccagacacagaaaaagatgactttattgt
tattctttattcctttcttatgtgtagaacctaggagagacatgtatgaa
aacagaaagggaactatcaagaggaagaggaggggtgagaaggcaggaga
aaataacgaagaggagaaacggtgatcaaagtgcatgccatgctttgaac
aaaaatgtaattatgtaacccaagattttgtgcaacaaatacagtctaat
gaaatgcttgctggttgtttttttgtttgtttttccttctacaaacagaa
aagagagatgaagagaaaggactcgctatgtatacaactaattcctgaca
gggactgccgcttgtaacataaataaagcattcgtac

gaattcctgtcctatcactgatgctgtctgtcaggattttaatctggacg
tgaactgtaagatttctttcttgtgctgggtgggattttccatatggcat
tgcccaataaattaattatttaattatctttcccagttgtataggcttgc
cacttgtgacgtggactaccacgggcaccatgaggaggagttggatgtat
acacattttatttcaccaagttgaggataagagaggacttcttttttttt
ttttaacttggtcccatttttactccaggccttactctgtaaaagttaag
ttgtgcaacccatctctatatatagactaaaaaaacaaaaacaaaaacaa
gaaccaaaaacccacaagtgacagtttccacaaacctcccctgtgttgca
atcctgagtacggagggcctgctttccaacagagctcatctagcttacag
cactcggggcctgcagctatgggaagctgctttcagatatagggttccga
cacacgtggggatgcttttgagcttgccccccttgccaccattccccggg
gggtcacatcgtggcaaactactctgctagatctagttctagttcaggtg
actgtgtggaaaccagatggccaaggtcctcccacagtgtgacaagagcc
agcatttttagaacattagaggggcccacagcatatcatgttaaaaggga
aatcattttaaagagtcatttaaaactttcctttctgtcacctacatgta
actgccatgactaggtgacaatatggaaaaaaacaagagacatctacctc
tctttgacttggggactaatgtacaaattctctaagcaggaaaatctgtg
cactgattggtatttacaggtgcagtgtgggagagtagatggaccgggca
cttaatttcctacctccttccttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_112197738_112198720
seq2: B6Ng01-223B06.b_44_1030

seq1  GAATTCATGGAGTTTTCTAGTCTATGGTACCATGGAAAGAGAAGCAGAAA  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCATGGAGTTTTCTAGTCTATGGTACCATGGAAAGAAAAGCAGAAA  50

seq1  CTAGAGCCCCCAGTCATAGGCTTTTCAATAGAGGGCAACTCATCCCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCCCCCAGTCATAGGCTTTTCAATAGAGGGCAACTCATCCCACTT  100

seq1  TACAATTCCAAGCTCCAGTTGATTAATCTGCATATCTGCCCAGTGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCCAAGCTCCAGTTGATTAATCTGCATATCTGCCCAGTGTTTTC  150

seq1  AACTACTGGTTAAACTACTCTGTGTTTCAGAGTGGTGTGCCACCATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGGTTAAACTACTCTGTGTTTCAGAGTGGTGTGCCACCATGGTC  200

seq1  CCTCACAGTTGGAGACAACATAAACACTGCTTTGCAAACAAACCTAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGTTGGAGACAACATAAACACTGCTTTGCAAACAAACCTAATTC  250

seq1  AAAGCTTGATCCAAAACTAAAACTTAGATATGCCATTTTAATGTTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGATCCAAAACTAAAACTTAGATATGCCATTTTAATGTTCTGGG  300

seq1  TTCTCTCAAAATAGGAAGTAGGATTTTTGTCATGAATCCATGAAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAAAATAGGAAGTAGGATTTTTGTCATGAATCCATGAAAACTCA  350

seq1  ATCATTTGAGATATTTGCATTCGAAATCCTCCTGGTTCGTTCCATTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGAGATATTTGCATTCGAAATCCTCCTGGTTCGTTCCATTCCAT  400

seq1  TCCACAGAGTTAATATCTTCACGATCATCATTACTTAAAAAAAACCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAGTTAATATCTTCACGATCATCATTACTTAAAAAAAACCACTT  450

seq1  AGGGAAGTAAAACATATTTATGGTAGTATTTATGGTGGTAAGGGCAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTAAAACATATTTATGGTAGTATTTATGGTGGTAAGGGCAAGCC  500

seq1  CTGTGTTTACACAGAGGCTGAAAAGATCCTGTGTGATCATAAAGCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTACACAGAGGCTGAAAAGATCCTGTGTGATCATAAAGCTTAGA  550

seq1  GACTGCATTTATTCTGGCATCAAGTAGAATGTGCGACTAGAACTGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATTTATTCTGGCATCAAGTAGAATGTGCGACTAGAACTGAAGAT  600

seq1  TATCATCTTAAGCTAAGCAAGCCAGACACAGAAAAAGATGACTTTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTAAGCTAAGCAAGCCAGACACAGAAAAAGATGACTTTATTGT  650

seq1  TATTCTTTATTCCTTTCTTATGTGTAGAACCTAGGAGAGACATGTATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTATTCCTTTCTTATGTGTAGAACCTAGGAGAGACATGTATGAA  700

seq1  AACAGAAAGGGAACTATCAAGAGGAAGAGGAGGGGTGAGAAGGCAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGGGAACTATCAAGAGGAAGAGGAGGGGTGAGAAGGCAGGAGA  750

seq1  AAATAACGAAGAGGAGAAACGGTGATCAAAGTGCATGCCATGC-TTGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATAACGAAGAGGAGAAACGGTGATCAAAGTGCATGCCATGCTTTGAAC  800

seq1  AAAAATGTAATTATGTAACCCAAGATTTTGTGCAACAAATACAGTCTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAATTATGTAACCCAAGATTTTGTGCAACAAATACAGTCTAAT  850

seq1  GAAATGCTTGCTGGTTGTTTTTTTGTTTGTTTTTCCTTCTACAAACAG-A  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAATGCTTGCTGGTTGTTTTTTTGTTTGTTTTTCCTTCTACAAACAGAA  900

seq1  AAGAGAGATGAAGAGAAAAGACTCGCTATGTATACAACT-ATTCCTGACA  947
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  AAGAGAGATGAAGAGAAAGGACTCGCTATGTATACAACTAATTCCTGACA  950

seq1  -GGACTGCCGCTTGTAACATAAATAAAGCATTCGTAC  983
       ||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCCGCTTGTAACATAAATAAAGCATTCGTAC  987


seq1: chr11_112383679_112384601
seq2: B6Ng01-223B06.g_68_998 (reverse)

seq1  AAGGAAGGAAGGAAGG--------AATTAAGTGCCCCGTCCATCTACTCT  42
      ||||||||||||||||        |||||||||||| |||||||||||||
seq2  AAGGAAGGAAGGAAGGAGGTAGGAAATTAAGTGCCCGGTCCATCTACTCT  50

seq1  CCCACACTGCACCTGTAAATACCAATCAGTGCACAGATTTTCCTGCTTAG  92
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGCACCTGTAAATACCAATCAGTGCACAGATTTTCCTGCTTAG  100

seq1  AGAATTTGTACATTAGTCCCCAAGTCAAAGAGAGGTAGATGTCTCTTGTT  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTACATTAGTCCCCAAGTCAAAGAGAGGTAGATGTCTCTTGTT  150

seq1  TTTTTCCATATTGTCACCTAGTCATGGCAGTTACATGTAGGTGACAGAAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATATTGTCACCTAGTCATGGCAGTTACATGTAGGTGACAGAAA  200

seq1  GGAAAGTTTTAAATGACTCTTTAAAATGATTTCCCTTTTAACATGATATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTTTAAATGACTCTTTAAAATGATTTCCCTTTTAACATGATATG  250

seq1  CTGTGGGCCCCTCTAATGTTCTAAAAATGCTGGCTCTTGTCACACTGTGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCCCCTCTAATGTTCTAAAAATGCTGGCTCTTGTCACACTGTGG  300

seq1  GAGGACCTTGGCCATCTGGTTTCCACACAGTCACCTGAACTAGAACTAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTTGGCCATCTGGTTTCCACACAGTCACCTGAACTAGAACTAGA  350

seq1  TCTAGCAGAGTAGTTTGCCACGATGTGACCCCCCGGGGAATGGTGGCAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGAGTAGTTTGCCACGATGTGACCCCCCGGGGAATGGTGGCAAG  400

seq1  GGGGGCAAGCTCAAAAGCATCCCCACGTGTGTCGGAACCCTATATCTGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAAGCTCAAAAGCATCCCCACGTGTGTCGGAACCCTATATCTGAA  450

seq1  AGCAGCTTCCCATAGCTGCAGGCCCCGAGTGCTGTAAGCTAGATGAGCTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTCCCATAGCTGCAGGCCCCGAGTGCTGTAAGCTAGATGAGCTC  500

seq1  TGTTGGAAAGCAGGCCCTCCGTACTCAGGATTGCAACACAGGGGAGGTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAAGCAGGCCCTCCGTACTCAGGATTGCAACACAGGGGAGGTTT  550

seq1  GTGGAAACTGTCACTTGTGGGTTTTTGGTTCTTGTTTTTGTTTTTGTTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACTGTCACTTGTGGGTTTTTGGTTCTTGTTTTTGTTTTTGTTTT  600

seq1  TTTAGTCTATATATAGAGATGGGTTGCACAACTTAACTTTTACAGAGTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTATATATAGAGATGGGTTGCACAACTTAACTTTTACAGAGTAA  650

seq1  GGCCTGGAGTAAAAATGGGACCAAGTTAAAAAAAAAAAAAGAAGTCCTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAGTAAAAATGGGACCAAGTTAAAAAAAAAAAAAGAAGTCCTCT  700

seq1  CTTATCCTCAACTTGGTGAAATAAAATGTGTATACATCCAACTCCTCCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTCAACTTGGTGAAATAAAATGTGTATACATCCAACTCCTCCTC  750

seq1  ATGGTGCCCGTGGTAGTCCACGTCACAAGTGGCAAGCCTATACAACTGGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCCGTGGTAGTCCACGTCACAAGTGGCAAGCCTATACAACTGGG  800

seq1  AAAGATAATTAAATAATTAATTTATTGGGCAATGCCATATGGAAAATCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAATTAAATAATTAATTTATTGGGCAATGCCATATGGAAAATCCC  850

seq1  ACCCAGCACAAGAAAGAAATCTTACAGTTCACGTCCAGATTAAAATCCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCACAAGAAAGAAATCTTACAGTTCACGTCCAGATTAAAATCCTG  900

seq1  ACAGACAGCATCAGTGATAGGACAGGAATTC  923
      |||||||||||||||||||||||||||||||
seq2  ACAGACAGCATCAGTGATAGGACAGGAATTC  931


| Home | SequenceCutter | Blast | Download |