BAC Information

Click to search

BAC

Clone NameB6Ng01-223M13
Chromosome11 (Build37)
Map Location 71,220,329 - 71,221,534
singlet/doubletsinglet
Overlap genenone
Upstream genePelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M13.bB6Ng01-223M13.g
ACCGA038429GA038430
length1,1851,191
definitionB6Ng01-223M13.b B6Ng01-223M13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatcctgcccttttcatccacttttctgcagcccgtcccatga
gaggtgaaagctgagctagtttctagttgtctgacgatgggtaagaatgt
catctgagtcagtgagacagaggcaatgtctcccaggcttccttgacgga
caaggctcataagcgatggttggtgtgaactgaagcctcctgccaagcga
cagtggagaggagcaacaaatgcagaaagcatcagggaagcacaagacac
agaccttgctgactttgagggtgcagctgtggcagagtaggggttcccgg
ccagtgatgacctcatatgacaagagagaggggaagctttgagccccaac
caaagtgtacaagattgggaatcaaaacccaaacctggcccattggagtg
aatctgagtgtacagtaccaggaagacatacaaaacaaaccatcagaggg
ctcagtgtacatagggcaggcacaagcagcggggatcaaaaaccagagaa
ggccagggtagaggcaacatcggcaaggatgggagagagtgttatggtca
gtcagcccaccccaggttcttcccaccacaggctcctactgccatccccc
cccccaccccagattagctccatgtaaagggcccagtgtagggcagacaa
ctgagggccctcatcacagagtaagctggcacctgaagtgacagtccaca
tgacaggccagtgggcagcctcactgggctcggatgccgaagagtgcaag
tctcatgctccctgctgctcctgcagggccatcagggtgtctctgactgt
aaggtctgtgtgagctgtcagcagcctgttggctgccaagaaagcaattg
cctcctctgactccattaataggagcttagtgtcgggatcaatgtgctga
gagtccccgctgcactcccgcccttgtcagcctgaatctagagctccaag
ctatgagcagcccacgtggcttgaatacttcccttggggtccccaactgg
ggctacgaagcctgtattgtttctgggttgtggcagttctacttgtgtcc
ttgttcgagcttgtctccatgagatgtctcaccaccagccggggttttgc
ctggtctaagtactgtgtacgaactatatcctttaggttacggaactatg
ggaggcttaaagatagaaatcttgagttccaggac
gaattccactaaaatcagggacaaggctgtctactctctccatagttatt
cagtatagaacttgaagtattagctagattgatacagctaaaggggacca
aatggatacaaatgggaaaggaagaaataaaaattgctatttgcagatga
tatggtagtttacataagtgaccataaaagttctaccagagaactcctac
agctgataaacatcttcagtaagtggctggatacaaaattaactgaaaaa
aattattagtagccctcctaaataaaaaacaaatgggctaagaaagaaat
tatggaacaacacacttcacaatagtcacagataatataaaataactttg
agtaattctaaccaagaaatgaaagacctgtatgacaagtgctttaaatt
tttgaagaaagaaattgcagaaggcatcagaagatgcaaagatctcccat
gctcctggattagtaagattgtaaaaatggccaaactaccaagaacaatc
tacagatcaatgcaattctcatcaatatactaacacagttcttcttagac
cttgaaataacaatactcaaattcatatggggaaacaaacaaacaaacaa
acaaacaaaaacatgcaggatagctaaaacaatcctgtacaaatttaaaa
aaacaaaaacaaaaacctttttgcagtatcactatccctgattgcaagtg
gtacttcagagcaatactaatgaatactacatggtactggcatgaaaaca
gacaggttgataattggaattaaatcaaggaaccagaagtaagtgcagac
tctatacatgcttgattttcgacaaagaagctgaaactacacattagaaa
agaaagaagaaagaaagaagaaagaagaagaaagaaagaagaagaaggct
cttcaacaaatgttgctgatctaactggatgtctccatgtaaaagaatgc
aagtagatttatatctatcaccctgcacatatctcagtccaaatggaccg
aaacctccaccataaaatcagataacacctaaatttgatagaagaaaaag
ccagagttagccttgaacacatcatacagagaataactcctgaatagaac
actggagaagcctcagccctcaaaatcagcaattaatatatgaccctcat
ggaactgaaagcctttcttgtttaaggttcaaggaaacacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71220329_71221534
seq2: B6Ng01-223M13.b_48_1232 (reverse)

seq1  GTCCTGGAACTCAATACATGGCCGAGGCTGGCCTTGAACTCATGATTTTC  50
                                   | ||| ||||||| || ||||
seq2  -----------------------------GTCCTGGAACTCAAGA-TTTC  20

seq1  TTACTTT-AGCCTCCC-TAGTTCTGTAA-CTATAGG-TATAGTTCTGTAA  96
      |  |||| |||||||| |||||| |||| ||| ||| |||||||| || |
seq2  TATCTTTAAGCCTCCCATAGTTCCGTAACCTAAAGGATATAGTTC-GT-A  68

seq1  CACAGTAACTAAGCCCA-GCAAAACCC--GCTGGTGGTGGGACATTCTCA  143
      |||||| ||| || ||| |||||||||  |||||||||| |||| |||||
seq2  CACAGT-ACTTAGACCAGGCAAAACCCCGGCTGGTGGTGAGACA-TCTCA  116

seq1  TTGGAGACAAGCTCG-ACA--GACAC-AGTAGAACTGCCACACCCAAGAA  189
       |||||||||||||| |||  ||||| ||||||||||||||| || ||||
seq2  -TGGAGACAAGCTCGAACAAGGACACAAGTAGAACTGCCACAACCCAGAA  165

seq1  AC-ATACAGGCTTCGTAGCCCAGTTTGGGGACCCCAAGGGAAGTATTCAA  238
      || ||||||||||||||||||   ||||||||||||||||||||||||||
seq2  ACAATACAGGCTTCGTAGCCCCAGTTGGGGACCCCAAGGGAAGTATTCAA  215

seq1  GCCACGTGGGCTGCTCATAGCTTGGAGCTCTAGATTCAGGCTGACAAGTG  288
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCACGTGGGCTGCTCATAGCTTGGAGCTCTAGATTCAGGCTGACAAGGG  265

seq1  C-GGAGTGCAGCGGGGACTCTCAGCACATTGATCCCGACACTAAGCTCCT  337
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGTGCAGCGGGGACTCTCAGCACATTGATCCCGACACTAAGCTCCT  315

seq1  ATTAATGGAGTCAGAGGAGGCAATTGCTTTCTTGGCAGCC-ACAGGCTGC  386
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTAATGGAGTCAGAGGAGGCAATTGCTTTCTTGGCAGCCAACAGGCTGC  365

seq1  TGACAGCTCACACAGACCTTACAGTCAGAGACACCCTGATGGCCCTGCAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTCACACAGACCTTACAGTCAGAGACACCCTGATGGCCCTGCAG  415

seq1  GAGCAGCAGGGAGCATGAGACTTGCACTCTTCGGCATCCGAGCCCAGTGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGGGAGCATGAGACTTGCACTCTTCGGCATCCGAGCCCAGTGA  465

seq1  GGCTGCCCACTGGCCTGTCATGTGGACTGTCACTTCAGGTGCCAGCTTAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCACTGGCCTGTCATGTGGACTGTCACTTCAGGTGCCAGCTTAC  515

seq1  TCTGTGATGAGGGCCCTCAGTTGTCTGCCCTACACTGGGCCCTTTACATG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGAGGGCCCTCAGTTGTCTGCCCTACACTGGGCCCTTTACATG  565

seq1  GAGCTAATCTGGGGTGGGGGGGGGGATGGCAGTAGGAGCCTGTGGTGGGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATCTGGGGTGGGGGGGGGGATGGCAGTAGGAGCCTGTGGTGGGA  615

seq1  AGAACCTGGGGTGGGCTGACTGACCATAACACTCTCTCCCATCCTTGCCG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGGGGTGGGCTGACTGACCATAACACTCTCTCCCATCCTTGCCG  665

seq1  ATGTTGCCTCTACCCTGGCCTTCTCTGGTTTTTGATCCCCGCTGCTTGTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCTCTACCCTGGCCTTCTCTGGTTTTTGATCCCCGCTGCTTGTG  715

seq1  CCTGCCCTATGTACACTGAGCCCTCTGATGGTTTGTTTTGTATGTCTTCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTATGTACACTGAGCCCTCTGATGGTTTGTTTTGTATGTCTTCC  765

seq1  TGGTACTGTACACTCAGATTCACTCCAATGGGCCAGGTTTGGGTTTTGAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGTACACTCAGATTCACTCCAATGGGCCAGGTTTGGGTTTTGAT  815

seq1  TCCCAATCTTGTACACTTTGGTTGGGGCTCAAAGCTTCCCCTCTCTCTTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCTTGTACACTTTGGTTGGGGCTCAAAGCTTCCCCTCTCTCTTG  865

seq1  TCATATGAGGTCATCACTGGCCGGGAACCCCTACTCTGCCACAGCTGCAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAGGTCATCACTGGCCGGGAACCCCTACTCTGCCACAGCTGCAC  915

seq1  CCTCAAAGTCAGCAAGGTCTGTGTCTTGTGCTTCCCTGATGCTTTCTGCA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGTCAGCAAGGTCTGTGTCTTGTGCTTCCCTGATGCTTTCTGCA  965

seq1  TTTGTTGCTCCTCTCCACTGTCGCTTGGCAGGAGGCTTCAGTTCACACCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTCCTCTCCACTGTCGCTTGGCAGGAGGCTTCAGTTCACACCA  1015

seq1  ACCATCGCTTATGAGCCTTGTCCGTCAAGGAAGCCTGGGAGACATTGCCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCGCTTATGAGCCTTGTCCGTCAAGGAAGCCTGGGAGACATTGCCT  1065

seq1  CTGTCTCACTGACTCAGATGACATTCTTACCCATCGTCAGACAACTAGAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCACTGACTCAGATGACATTCTTACCCATCGTCAGACAACTAGAA  1115

seq1  ACTAGCTCAGCTTTCACCTCTCATGGGACGGGCTGCAGAAAAGTGGATGA  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCAGCTTTCACCTCTCATGGGACGGGCTGCAGAAAAGTGGATGA  1165

seq1  AAAGGGCAGGATCTGAATTC  1206
      ||||||||||||||||||||
seq2  AAAGGGCAGGATCTGAATTC  1185