BAC Information

Click to search

BAC

Clone NameB6Ng01-224A11
Chromosome11 (Build37)
Map Location 26,672,525 - 26,882,449
singlet/doubletdoublet
Overlap geneOTTMUSG00000005300, LOC666270, LOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224A11.bB6Ng01-224A11.g
ACCGA038609GA038610
length1,224331
definitionB6Ng01-224A11.b B6Ng01-224A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,881,236 - 26,882,449)(26,672,525 - 26,672,855)
sequence
gaattctctaatgaaaaagttactatagaaattcaataatttaaatagga
agctgagggaatattttcatatgagaatatttcatattaatgccttcaga
agaacagacaaatataaaacagtttgaaacccattctttaaaatcttgga
aagaatgtttaaaatgattaaaatagactcagttgacattttcccaaatt
ctaaaatttaaaaaactgaactacacatattttaaactattatgtaataa
aagctactcttcaatctacaaaatttatgagaatgaagattattttaaat
aaataggaataaattttatagattgaataaacattaaatattatacattt
ggaaatatttattgtaacctttgaaaatatgcatgggtgcacaaatgccc
aagtgtacattacatatatctagacaaaaatgcatacacatgctatgaat
tcaccttctagatgaattaaaaaacaagttaaagttatagaatcaatgta
aaaacacacacaaatatcaatgcctatttttctggcaaaaagaaacaaat
aattcaactagaataaatataacttacaatcaatagccttttaaaatatt
ctggcaggaatctgtgaaatgtgtgctgaggaactgggtccatcttttca
acaacacaacagaatgcaaagactatgtcttggaatccaaaactcaattt
gcaaaggggagaggatcacaaaattccagagacccttcagacatattttg
atgttttccttttgtgtactgtattgatgagtgtggcgtgtgctcattga
gaaaccagccctcggtaattgtcagggatcttcattcctagtgcagactc
tactggaaattaattgcttcggtgcatccgaaccacatcataaatgtcat
gtagaagttgcagggagtgaggaggcagtgacagctcaatccgcactgtt
tcatttaaaggtgggtaaaacaccagtgcgacagaagtgctcttcatcaa
taatttagtccacagtgtaaaggccagccgttgccaaagaatgccaggga
gccgctgcctcctggtttttaatgaccccagctagggaggtttggagggc
cagcttccaattcaacattcacctgcacatttcttggccaatgtcggcga
atgaagaattccaaggactctgaactgtgacacggacaatggcttgcaaa
gaaggtacctaggaaacactttgc
ttgggaattacaggtatggagtgtgtgcttgtgtgtgtgtgtgtgtggtg
tgtgtgtgtgcgtgtgagagagagagagagagagagagagagagagagag
agagagagagagagattgagagagaaagagattgagagagagagagagag
agagagagaattttctcgtcagttccttttaaagggaaatgtctaaatgt
cttccacagagacagacacaatagtaccaaggaagaactgacagacggta
gagcacctgatggatctgctgtaggtcatttttgagagatatttggaaac
tcaagtgagtgaaaaagaaaagcagaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26881236_26882449
seq2: B6Ng01-224A11.b_42_1265 (reverse)

seq1  GCAAAGGTTTTCCTAGGTTACACTTCTTTTTTCAACCCTTTGTCC-TGT-  48
      ||||||  ||||||||| ||| ||||  ||| ||| || |||||| ||| 
seq2  GCAAAGTGTTTCCTAGG-TAC-CTTC--TTTGCAAGCCATTGTCCGTGTC  46

seq1  -CAGCTC--AGTCCTT-GATATCTTCATCTGCCGACAT--GCCCAG--AT  90
       ||| ||  ||||||| ||  |||||||  ||||||||  ||| ||  ||
seq2  ACAGTTCAGAGTCCTTGGAATTCTTCATTCGCCGACATTGGCCAAGAAAT  96

seq1  GTGCA-GTGAATGTTGATTTG--AGCTGGCCCCTCAACCCCTCCCT-GCT  136
      ||||| ||||||||||| |||  |||||| ||||| |  ||||||| |||
seq2  GTGCAGGTGAATGTTGAATTGGAAGCTGG-CCCTCCAAACCTCCCTAGCT  145

seq1  GGTGTCATTAAAACCAGGGAGGCAGCGGCTCCCCTGGCA-TCTTTGGC-A  184
      || |||||||||| |  ||||||||||||| |||||||| |||||||| |
seq2  GGGGTCATTAAAAACCAGGAGGCAGCGGCT-CCCTGGCATTCTTTGGCAA  194

seq1  CGGCTTGGCTTTACACTGTGGACTAAATTATTGATGAAGAGCACTTCTGT  234
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGCCTTTACACTGTGGACTAAATTATTGATGAAGAGCACTTCTGT  244

seq1  CGCACT-GTGTTTTACCCACCTTTAAATGAAACAGTGCGGATTGAGCTGT  283
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTGGTGTTTTACCCACCTTTAAATGAAACAGTGCGGATTGAGCTGT  294

seq1  CACTGCCTCCTCACTCCCTGCAACTTCTACATGACATTTATGATGTGGTT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTCCTCACTCCCTGCAACTTCTACATGACATTTATGATGTGGTT  344

seq1  CGGATTGCACCGAAGCAATTAATTTCCAGTAGAGTCTGCACTAGGAATGA  383
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGA-TGCACCGAAGCAATTAATTTCCAGTAGAGTCTGCACTAGGAATGA  393

seq1  AGATCCCTGACAATTACCGAGGGCTGGTTTCTCAATGAGCACACGCCACA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTGACAATTACCGAGGGCTGGTTTCTCAATGAGCACACGCCACA  443

seq1  CTCATCAATACAGTACACAAAAGGAAAACATCAAAATATGTCTGAAGGGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAATACAGTACACAAAAGGAAAACATCAAAATATGTCTGAAGGGT  493

seq1  CTCTGGAATTTTGTGATCCTCTCCCCTTTGCAAATTGAGTTTTGGATTCC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATTTTGTGATCCTCTCCCCTTTGCAAATTGAGTTTTGGATTCC  543

seq1  AAGACATAGTCTTTGCATTCTGTTGTGTTGTTGAAAAGATGGACCCAGTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAGTCTTTGCATTCTGTTGTGTTGTTGAAAAGATGGACCCAGTT  593

seq1  CCTCAGCACACATTTCACAGATTCCTGCCAGAATATTTTAAAAGGCTATT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCACACATTTCACAGATTCCTGCCAGAATATTTTAAAAGGCTATT  643

seq1  GATTGTAAGTTATATTTATTCTAGTTGAATTATTTGTTTCTTTTTGCCAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAAGTTATATTTATTCTAGTTGAATTATTTGTTTCTTTTTGCCAG  693

seq1  AAAAATAGGCATTGATATTTGTGTGTGTTTTTACATTGATTCTATAACTT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGGCATTGATATTTGTGTGTGTTTTTACATTGATTCTATAACTT  743

seq1  TAACTTGTTTTTTAATTCATCTAGAAGGTGAATTCATAGCATGTGTATGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTTTTTAATTCATCTAGAAGGTGAATTCATAGCATGTGTATGC  793

seq1  ATTTTTGTCTAGATATATGTAATGTACACTTGGGCATTTGTGCACCCATG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTCTAGATATATGTAATGTACACTTGGGCATTTGTGCACCCATG  843

seq1  CATATTTTCAAAGGTTACAATAAATATTTCCAAATGTATAATATTTAATG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCAAAGGTTACAATAAATATTTCCAAATGTATAATATTTAATG  893

seq1  TTTATTCAATCTATAAAATTTATTCCTATTTATTTAAAATAATCTTCATT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAATCTATAAAATTTATTCCTATTTATTTAAAATAATCTTCATT  943

seq1  CTCATAAATTTTGTAGATTGAAGAGTAGCTTTTATTACATAATAGTTTAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAATTTTGTAGATTGAAGAGTAGCTTTTATTACATAATAGTTTAA  993

seq1  AATATGTGTAGTTCAGTTTTTTAAATTTTAGAATTTGGGAAAATGTCAAC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGTAGTTCAGTTTTTTAAATTTTAGAATTTGGGAAAATGTCAAC  1043

seq1  TGAGTCTATTTTAATCATTTTAAACATTCTTTCCAAGATTTTAAAGAATG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTATTTTAATCATTTTAAACATTCTTTCCAAGATTTTAAAGAATG  1093

seq1  GGTTTCAAACTGTTTTATATTTGTCTGTTCTTCTGAAGGCATTAATATGA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAACTGTTTTATATTTGTCTGTTCTTCTGAAGGCATTAATATGA  1143

seq1  AATATTCTCATATGAAAATATTCCCTCAGCTTCCTATTTAAATTATTGAA  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTCATATGAAAATATTCCCTCAGCTTCCTATTTAAATTATTGAA  1193

seq1  TTTCTATAGTAACTTTTTCATTAGAGAATTC  1214
      |||||||||||||||||||||||||||||||
seq2  TTTCTATAGTAACTTTTTCATTAGAGAATTC  1224

seq1: chr11_26672525_26672855
seq2: B6Ng01-224A11.g_78_408

seq1  TTGGGAATTACAGGTATGGAGTGTGTGCTTGTGTGTGTGTGTGTGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATTACAGGTATGGAGTGTGTGCTTGTGTGTGTGTGTGTGTGGTG  50

seq1  TGTGTGTGTGCGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGATTGAGAGAGAAAGAGATTGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGATTGAGAGAGAAAGAGATTGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAATTTTCTCGTCAGTTCCTTTTAAAGGGAAATGTCTAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAATTTTCTCGTCAGTTCCTTTTAAAGGGAAATGTCTAAATGT  200

seq1  CTTCCACAGAGACAGACACAATAGTACCAAGGAAGAACTGACAGACGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGAGACAGACACAATAGTACCAAGGAAGAACTGACAGACGGTA  250

seq1  GAGCACCTGATGGATCTGCTGTAGGTCATTTTTGAGAGATATTTGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTGATGGATCTGCTGTAGGTCATTTTTGAGAGATATTTGGAAAC  300

seq1  TCAAGTGAGTGAAAAAGAAAAGCAGAAAGAA  331
      |||||||||||||||||||||||||||||||
seq2  TCAAGTGAGTGAAAAAGAAAAGCAGAAAGAA  331