BAC Information

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BAC

Clone NameB6Ng01-224I22
Chromosome11 (Build37)
Map Location 20,355,683 - 20,533,251
singlet/doubletdoublet
Overlap geneSertad2, LOC665953
Upstream geneLOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492
Downstream geneAftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I22.bB6Ng01-224I22.g
ACCGA038983GA038984
length1,097884
definitionB6Ng01-224I22.b B6Ng01-224I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,532,157 - 20,533,251)(20,355,683 - 20,356,565)
sequence
gaattcaaaagcacgtttcaagaacaaagcttgaaaacaacgactgttcc
tgaaagccagctagggtttgactgattctacttaaataaaatctgccgtt
tctgagtctgtccctgctgactgccctccactcagtgcctgcaaaaccga
ctttctactcctgaaactacctagatgcgagcaaaaagttattctaaaac
agtctcactgctttgcgaaacttacaattcaattttcaactctactgatt
tgctaccattccggctaaagctaagacaatttatagttaagaaaaatatg
aacaattcagtactttctctcgacgcaatggtcctctgaagtgcccagtg
tcaatggtacaaagtctacgcgtcgggacagctggctcccctcagcaccg
ccccccctctgccccgtcataggcggttaacaccaagatgacttgtagat
ttctaatttaaaaaccaggaaggcattaagtttaataaacatttggatcc
aaaatcaattcacttgggcacggaagaaaagagggtgaagagaactgttt
taacgcaaaaccaccgggaaactctcgaaacacaatatagcaagttggat
gcaaacccagacacggaactcaaaagtgaagcagcctccctgccagcaac
cggaatctttaaaaaaaaaaaaaagtctcgcacgttctcagcaccagagc
caccacagcgagcgcgcgcgcgcgcgcacacacacacacacacacactca
cacacacacacacacaccagctgtgacggcaaaagctcccgggcccctgc
cgcccggaccccgccccaggtcgtgacagtcggggtctccaggcggccag
cgggttgctccccaaccttgcccggtccggcctccgctgccttgggctcc
cgcctggcccagcccagcacgcccctcgcccgccggagcccaaccccggg
gagcctccagctcggcccggaacttcaccacaagcagttccaccaggagc
ttacgcatcggaggggtttccgcccaccctcaagctattgcccgctcatg
ccgtggctgcccccgccgcgtgaccgacgtagcaggagctcggcgag
gaattccaacacagccagggctacacagagaacccctgtctcaggtgctc
aggcatggggactggaggttgggggtacgaccccaaacctaagtagccca
gggagatgtctcagtcactattccccagcaggaagctgcgacacttggag
cctttgggattggcagagttaaaatcatataacccaggatgccgtggact
ctttttttttttttccaaccccgacgacgatggaatttggaattgggtag
agggggctgggaaggcaagaagctgtgatcgggatgcatccttagggtgg
gggtctggagaagtcggtgttcggtcactgggtgaataataaaagatgca
gccctgcctgtgagcagtttgtgtgatgtgttccggaaagatctaagtgt
ggcagagggtgagagctgagagttagcaggctaacccgtgtgtaagagtg
ccttctgcgcgttcagcaatcccttaattacctagggagaccttccgaaa
caggaactcaatattggtccctaaaaggttgggtaatgggttttccttac
ttctgaaatccaaggggatcaatcactgattccccatggtttcccagact
cttctggatgtctttgtcttctaaaaatcctaggctcccacgagaaagca
cttagttaaggatgcagagatgctgtgtacccctcaacctattaatcatc
ctgaaacctttgctaggaatttcctgctccttgatccgacctcctcagca
gcgcggctaactcagacctggggaggaatgcttagaattgctctcgcctg
atccatcttctatttaccccgcccagtcttctgttcacaggcaaccctgg
gaagcagggaactccctggcttccctctccggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20532157_20533251
seq2: B6Ng01-224I22.b_47_1143 (reverse)

seq1  CTCGCCGAGCTCCCTGCTACCGTCGGCCCCGCGGCGGGGGC-GCC-CCGC  48
      ||||||||||| ||||||| |||||| | |||||||||||| ||| | ||
seq2  CTCGCCGAGCT-CCTGCTA-CGTCGGTCACGCGGCGGGGGCAGCCACGGC  48

seq1  ATGGAGCGGGC-ATAGCTTGAGGGGTGGGCGGAAACCCCTCCGATGCGTT  97
      || |||||||| ||||||||| ||||||||||||||||||||||||||| 
seq2  AT-GAGCGGGCAATAGCTTGA-GGGTGGGCGGAAACCCCTCCGATGCGTA  96

seq1  AGCTCCTGGTGGACCTGCTTGTGGTG-AGTTCCGGGCCGAGCTGGAGGCT  146
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  AGCTCCTGGTGGAACTGCTTGTGGTGAAGTTCCGGGCCGAGCTGGAGGCT  146

seq1  CCCCGGGGTTGGGCTCCGGCGGGCGAGGGGCGGTGCTGGGCTGGGCCAGG  196
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCCGGGGTTGGGCTCCGGCGGGCGAGGGGC-GTGCTGGGCTGGGCCAGG  195

seq1  CGGGAGCCCAAGGCAGCGGAGGCCGGACCGGGC-AGGTTGGGGAGC-ACC  244
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  CGGGAGCCCAAGGCAGCGGAGGCCGGACCGGGCAAGGTTGGGGAGCAACC  245

seq1  CGCTGGCCGCCTGGAGACCCCGACTGTCACGACCTGGGGCGGGGTCCGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGCCGCCTGGAGACCCCGACTGTCACGACCTGGGGCGGGGTCCGGG  295

seq1  CGGCAGGGGCCC-GGAGCTTTTGCCGTCACAGCTGGTGTGTGTGTGTGTG  343
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGGGCCCGGGAGCTTTTGCCGTCACAGCTGGTGTGTGTGTGTGTG  345

seq1  TGTGAGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCTCGCTGTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCTCGCTGTGG  395

seq1  TGGCTCTGGTGCTGAGAACGTGCGAGACTTTTTTTTTTTTTTAAAGATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGGTGCTGAGAACGTGCGAGACTTTTTTTTTTTTTTAAAGATTC  445

seq1  CGGTTGCTGGCAGGGAGGCTGCTTCACTTTTGAGTTCCGTGTCTGGGTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCTGGCAGGGAGGCTGCTTCACTTTTGAGTTCCGTGTCTGGGTTT  495

seq1  GCATCCAACTTGCTATATTGTGTTTCGAGAGTTTCCCGGTGGTTTTGCGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAACTTGCTATATTGTGTTTCGAGAGTTTCCCGGTGGTTTTGCGT  545

seq1  TAAAACAGTTCTCTTCACCCTCTTTTCTTCCGTGCCCAAGTGAATTGATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTTCTCTTCACCCTCTTTTCTTCCGTGCCCAAGTGAATTGATT  595

seq1  TTGGATCCAAATGTTTATTAAACTTAATGCCTTCCTGGTTTTTAAATTAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCAAATGTTTATTAAACTTAATGCCTTCCTGGTTTTTAAATTAG  645

seq1  AAATCTACAAGTCATCTTGGTGTTAACCGCCTATGACGGGGCAGAGGGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACAAGTCATCTTGGTGTTAACCGCCTATGACGGGGCAGAGGGGG  695

seq1  GGCGGTGCTGAGGGGAGCCAGCTGTCCCGACGCGTAGACTTTGTACCATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGCTGAGGGGAGCCAGCTGTCCCGACGCGTAGACTTTGTACCATT  745

seq1  GACACTGGGCACTTCAGAGGACCATTGCGTCGAGAGAAAGTACTGAATTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGGCACTTCAGAGGACCATTGCGTCGAGAGAAAGTACTGAATTG  795

seq1  TTCATATTTTTCTTAACTATAAATTGTCTTAGCTTTAGCCGGAATGGTAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTTTCTTAACTATAAATTGTCTTAGCTTTAGCCGGAATGGTAG  845

seq1  CAAATCAGTAGAGTTGAAAATTGAATTGTAAGTTTCGCAAAGCAGTGAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGTAGAGTTGAAAATTGAATTGTAAGTTTCGCAAAGCAGTGAGA  895

seq1  CTGTTTTAGAATAACTTTTTGCTCGCATCTAGGTAGTTTCAGGAGTAGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGAATAACTTTTTGCTCGCATCTAGGTAGTTTCAGGAGTAGAA  945

seq1  AGTCGGTTTTGCAGGCACTGAGTGGAGGGCAGTCAGCAGGGACAGACTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTTTTGCAGGCACTGAGTGGAGGGCAGTCAGCAGGGACAGACTCA  995

seq1  GAAACGGCAGATTTTATTTAAGTAGAATCAGTCAAACCCTAGCTGGCTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGCAGATTTTATTTAAGTAGAATCAGTCAAACCCTAGCTGGCTTT  1045

seq1  CAGGAACAGTCGTTGTTTTCAAGCTTTGTTCTTGAAACGTGCTTTTGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAGTCGTTGTTTTCAAGCTTTGTTCTTGAAACGTGCTTTTGAAT  1095

seq1  TC  1095
      ||
seq2  TC  1097

seq1: chr11_20355683_20356565
seq2: B6Ng01-224I22.g_69_952

seq1  GAATTCCAACACAGCCAGGGCTACACAGAGAACCCCTGTCTCAGGTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACAGCCAGGGCTACACAGAGAACCCCTGTCTCAGGTGCTC  50

seq1  AGGCATGGGGACTGGAGGTTGGGGGTACGACCCCAAACCTAAGTAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGGGACTGGAGGTTGGGGGTACGACCCCAAACCTAAGTAGCCCA  100

seq1  GGGAGATGTCTCAGTCACTATTCCCCAGCAGGAAGCTGCGACACTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGTCTCAGTCACTATTCCCCAGCAGGAAGCTGCGACACTTGGAG  150

seq1  CCTTTGGGATTGGCAGAGTTAAAATCATATAACCCAGGATGCCGTGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGATTGGCAGAGTTAAAATCATATAACCCAGGATGCCGTGGACT  200

seq1  CTTTTTTTTTTTTTCCAACCCCGACGACGATGGAATTTGGAATTGGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTCCAACCCCGACGACGATGGAATTTGGAATTGGGTAG  250

seq1  AGGGGGCTGGGAAGGCAAGAAGCTGTGATCGGGATGCATCCTTAGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTGGGAAGGCAAGAAGCTGTGATCGGGATGCATCCTTAGGGTGG  300

seq1  GGGTCTGGAGAAGTCGGTGTTCGGTCACTGGGTGAATAATAAAAGATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGAGAAGTCGGTGTTCGGTCACTGGGTGAATAATAAAAGATGCA  350

seq1  GCCCTGCCTGTGAGCAGTTTGTGTGATGTGTTCCGGAAAGATCTAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCTGTGAGCAGTTTGTGTGATGTGTTCCGGAAAGATCTAAGTGT  400

seq1  GGCAGAGGGTGAGAGCTGAGAGTTAGCAGGCTAACCCGTGTGTAAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGTGAGAGCTGAGAGTTAGCAGGCTAACCCGTGTGTAAGAGTG  450

seq1  CCTTCTGCGCGTTCAGCAATCCCTTAATTACCTAGGGAGACCTTCCGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCGCGTTCAGCAATCCCTTAATTACCTAGGGAGACCTTCCGAAA  500

seq1  CAGGAACTCAATATTGGTCCCTAAAAGGTTGGGTAATGGGTTTTCCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTCAATATTGGTCCCTAAAAGGTTGGGTAATGGGTTTTCCTTAC  550

seq1  TTCTGAAATCCAAGGGGATCAATCACTGATTCCCCATGG-TTCCCAGACT  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTGAAATCCAAGGGGATCAATCACTGATTCCCCATGGTTTCCCAGACT  600

seq1  CTTCTGGATGTCTTTGTCTTCTAAAAATCCTAGGCTCCCACGAGAAAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGATGTCTTTGTCTTCTAAAAATCCTAGGCTCCCACGAGAAAGCA  650

seq1  CTTAGTTAAGGATGCAGAGATGCTGTGTACCCCTCAACCTATTAATCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAAGGATGCAGAGATGCTGTGTACCCCTCAACCTATTAATCATC  700

seq1  CTGAAACCTTTGCTAGGAATTTCCTGCTCCTTGATCCGACCTCCTCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTTTGCTAGGAATTTCCTGCTCCTTGATCCGACCTCCTCAGCA  750

seq1  GCGCGGCTAACTCAGACCTGGGGAGGAATGCTTAGAATTGCTCTCGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGCTAACTCAGACCTGGGGAGGAATGCTTAGAATTGCTCTCGCCTG  800

seq1  -TCCATCTTCTATTTACCCCGCCCAGTCTTCTGTTCACAGCCAACCCCTG  848
       ||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  ATCCATCTTCTATTTACCCCGCCCAGTCTTCTGTTCACAGGCAA-CCCTG  849

seq1  GGAAGCAGGGAACTCTCTGGCTTCCCTCTCCGGTC  883
      ||||||||||||||| |||||||||||||||||||
seq2  GGAAGCAGGGAACTCCCTGGCTTCCCTCTCCGGTC  884