BAC Information

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BAC

Clone NameB6Ng01-225B11
Chromosome11 (Build37)
Map Location 41,964,277 - 41,965,437
singlet/doubletsinglet
Overlap geneGabra1
Upstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2
Downstream geneGabra6, Gabrb2, Atp10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225B11.bB6Ng01-225B11.g
ACCGA039373GA039374
length1,1521,214
definitionB6Ng01-225B11.b B6Ng01-225B11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctttttctttactaactgttcctcatcttcttgaaaacagata
caagtgctatagatgacgttttctgatgaggaacttcatctaaagacatt
cccttttaaagatacaacactaagccactaagtgtacattagtaatagtg
acctctacatatcttatatgaaaatgcatggttcccccttttttttttag
ctgaccacacttaattaaaaaaaaatcaaaaatacccaaacaaacctgta
cgaccaaatacgaacatatttgaagcctaattaaagttgggcgtaaaata
cttatatctagggacataattatctaggaacatcattttaatgatattgt
gatactggtaatgaattaatattggctcaggaaaaatatggtgggtcatc
ttctcctatctaaggttactttgtgggctgggggaactaataaggcctga
tatatttgatgtactatttggcatccaagttacaaataatgacatcatgg
ttagaaatgtaactgccactcaggagaaaacccaagagcccacgatgtaa
ggaatgcatcaaaataagaaaagggtggggaagggtagtcctctctaaag
tcctgtttaggtgacaggtttgagtgctattaatcccgcgtcttcgggat
agaatgtgatctataaatagagaacaatgactccccatgactgagctgct
aggcacatggaggcactttgctattttctttgcttgctcccatcctacac
gatcactatttttcctctatgaatcatattttaccaaaatagttgctcag
tctgcttgtctagtgggaacagtaagccggttaggtaaactggatttgac
tcagtccttgtctgaaaccccctctgcaggaagccagaaatacattatct
tcaccttatgtatgcatgatagtcagaatagaaggggaaagaaaagctga
gagaggccagctctacagctcaaagttcctttgtctacacaaagggtcct
ccttgatgctattaaacagtacacatccagaagtacacattggagtatgt
ctatgatacatcaatggggagccaagccataaataattcatgaatgcatg
gcacagtctacctgacctgcaaatcctcagatgatatgacaattaattat
tt

gaattcactcaagacccttccaaaagtcttgggctacatatccagcttca
ccctctgcaacacacacagcttgtcttgtaagattagccatactgcactc
cattgctgctgctggttttggtagtcatcccctgatacaggtatctgcaa
aatgttgggtcttttgttgaaactgaactgcacttttaccaataacctct
catggtgcagcctcaactttgcatgaccgcttcaatcttggacctacaac
tgacactaaggctgcacattgactatgagtggtctctcccagtccctcaa
agttccaagcctcagctattctccatgaccctttcatgctttcaaaatca
gcaagatctaggtgactgagttcagctaccagtaagaggtacaatcttgg
ttgcctctggaatatagcatctgtgttcttttcctctctctgtgcaacat
gtgaagcagtagtggggctaagaggttctatgggtcttagtcaagctgga
aaagcccgaagtgttatagctcttaagagaagtgaggggatttgggcagc
ctgcagagaagatcctgctactgtggctgcaccagggacaagggtggtag
tgaagtgggtctggcctgccaggcaagtccaaagttaagtgatgaatgct
ttaggagaaagaactcgttctcaagtagatgcttcctgttggcttatttt
gagatgttagtgatgctctctttgcatgggggagtacttcagctgttttc
cctatgtgactgtcatgaccctctcagtggggtatcctgcttaaatgttc
cagagaaaggcagagttaggcaggaaatggctccactcttaccattctca
tttctgagattcacggggtctgaggtcactcaatcttatcagttctcatg
tatggagagatagtccacttaccctacatgttctgactctcaggaaacag
ttcaaagaagaagtttcaccacacaatgctgtctcttcttaacaccatag
gatcactcagctccagcccatcatgaagtaaggtatcacagcaagcagga
ctccactttagtagttctggttatcttggttattggtggctaattttcat
ccccagcctagtccaataccaggaaatattaatccaataacctagatcta
ggtccactcgacttcttgataggacctctcatggaagacaggggccaggg
tctctctcatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41964277_41965437
seq2: B6Ng01-225B11.b_44_1195

seq1  GAATTCTCTTTTTCTTTACTAACTGTTCCTCATCTTCTTGAAAACAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTTCTTTACTAACTGTTCCTCATCTTCTTGAAAACAGATA  50

seq1  CAAGTGCTATAGATGACGTTTTCTGATGAGGAACTTCATCTAAAGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTATAGATGACGTTTTCTGATGAGGAACTTCATCTAAAGACATT  100

seq1  CCCTTTTAAAGATACAACACTAAGCCACTAAGTGTACATTAGTAATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAAAGATACAACACTAAGCCACTAAGTGTACATTAGTAATAGTG  150

seq1  ACCTCTACATATCTTATATGAAAATGCATGGTTCCCCCTTTTTTTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACATATCTTATATGAAAATGCATGGTTCCCCCTTTTTTTTTTAG  200

seq1  CTGACCACACTTAATTAAAAAAAAATCAAAAATACCCAAACAAACCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACACTTAATTAAAAAAAAATCAAAAATACCCAAACAAACCTGTA  250

seq1  CGACCAAATACGAACATATTTGAAGCCTAATTAAAGTTGGGCGTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCAAATACGAACATATTTGAAGCCTAATTAAAGTTGGGCGTAAAATA  300

seq1  CTTATATCTAGGGACATAATTATCTAGGAACATCATTTTAATGATATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCTAGGGACATAATTATCTAGGAACATCATTTTAATGATATTGT  350

seq1  GATACTGGTAATGAATTAATATTGGCTCAGGAAAAATATGGTGGGTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGTAATGAATTAATATTGGCTCAGGAAAAATATGGTGGGTCATC  400

seq1  TTCTCCTATCTAAGGTTACTTTGTGGGCTGGGGGAACTAATAAGGCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTATCTAAGGTTACTTTGTGGGCTGGGGGAACTAATAAGGCCTGA  450

seq1  TATATTTGATGTACTATTTGGCATCCAAGTTACAAATAATGACATCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGATGTACTATTTGGCATCCAAGTTACAAATAATGACATCATGG  500

seq1  TTAGAAATGTAACTGCCACTCAGGAGAAAACCCAAGAGCCCACGATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATGTAACTGCCACTCAGGAGAAAACCCAAGAGCCCACGATGTAA  550

seq1  GGAATGCATCAAAATAAGAAAAGGGTGGGGAAGGGTAGTCCTCTCTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCATCAAAATAAGAAAAGGGTGGGGAAGGGTAGTCCTCTCTAAAG  600

seq1  TCCTGTTTAGGTGACAGGTTTGAGTGCTATTAATCCCGCGTCTTCGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTAGGTGACAGGTTTGAGTGCTATTAATCCCGCGTCTTCGGGAT  650

seq1  AGAATGTGATCTATAAATAGAGAACAATGACTCCCCATGACTGAGCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGATCTATAAATAGAGAACAATGACTCCCCATGACTGAGCTGCT  700

seq1  AGGCACATGGAGGCACTTTGCTATTTTCTTTGCTTGCTCCCATCCTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGGAGGCACTTTGCTATTTTCTTTGCTTGCTCCCATCCTACAC  750

seq1  GATCACTATTTTTCCTCTATGAATCATATTTTACCAAAATAGTTGCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTATTTTTCCTCTATGAATCATATTTTACCAAAATAGTTGCTCAG  800

seq1  TCTGCTTGTCTAGTGGGAACAGTAAGCCGGTTAGGTAAACTGGATTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGTCTAGTGGGAACAGTAAGCCGGTTAGGTAAACTGGATTTGAC  850

seq1  TCAGTCCTTGTCTGAAACCCCCTCTGCAGGAAGCCAGAAATACATTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTGTCTGAAACCCCCTCTGCAGGAAGCCAGAAATACATTATCT  900

seq1  TCACCTTATGTATGCATGATAGTCAGAAATAGAAGGGGAAAGAAAAGCTG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCACCTTATGTATGCATGATAGTCAG-AATAGAAGGGGAAAGAAAAGCTG  949

seq1  AGAGAGGCCAGCTCTACAGCTCAAAGTTCCTTTGTCTACACAAA-GGTCC  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAGAGGCCAGCTCTACAGCTCAAAGTTCCTTTGTCTACACAAAGGGTCC  999

seq1  TCCTTGATGCTATTAAACAGTACACATCCAGAAAGTTAACACATTGGAGT  1049
      ||||||||||||||||||||||||||||||| ||||  ||||||||||||
seq2  TCCTTGATGCTATTAAACAGTACACATCCAG-AAGT--ACACATTGGAGT  1046

seq1  ATGTCTATGATACAATCAAATGGGAGCAAAAGCATAAATAAATTCATGAA  1099
      ||||||||||||| |||||  |||||| ||  ||||||| ||||||||||
seq2  ATGTCTATGATAC-ATCAATGGGGAGCCAAGCCATAAAT-AATTCATGAA  1094

seq1  TGCCATGGGACAGTCCTACTGACCTGGAAAATCTTTAAGATGATAATGAC  1149
      || ||||| ||||||   |||||||| |||  |  | ||||||| |||||
seq2  TG-CATGGCACAGTCTACCTGACCTGCAAATCC--TCAGATGAT-ATGAC  1140

seq1  AATAAATTATTT  1161
      ||| ||||||||
seq2  AATTAATTATTT  1152


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