BAC Information

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BAC

Clone NameB6Ng01-225J06
Chromosome11 (Build37)
Map Location 40,065,592 - 40,209,789
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225J06.bB6Ng01-225J06.g
ACCGA039737GA039738
length477860
definitionB6Ng01-225J06.b B6Ng01-225J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,209,307 - 40,209,789)(40,065,592 - 40,066,451)
sequence
aatggcctttcaagaggtgccatgctttgtgtctgcacatgtttggaact
gctgactattaacactgataagtggtgtttataagccaaagaaaatgtaa
caaagtcgctacagatacccacagaccctttcttatttaactaaggaagc
tggggatggtgacatgtctgcaatctagtaatccctgtttagggaacaca
gcggctgacacatcatgagttcaaaaccagcttgggctctctactgagag
cccctaggacccggtatcaagagacaaaaacaaaaactccaaaccaaacc
aactccaagaacaacatggacctctgtaagaagttagaatcattgggaca
tggactctgatcagttaggagttggtttaatgtcgtgagatgtgtttgag
taaagcactccaagaatagcacagttgtttggaaaagttttcttttagtt
ttgtgtgtgtgtgtgtgtgtgtgtgtg

gaattccaagttatagccctgccttaaaccaactgcataataaccactgg
cattgaacatcatgcatctattcccataccgaatatcaactcatttcaat
gtggctctagtttgaagatgaatgtattagagagatgacactatatcatg
ctggggtcttgtcacttgtggcacttttgaccactaaaaatggaaagaaa
aaaagtaaacttatacttatttagaatagtgagaaattatgagccttttt
attttactatgtctcatcttcttttgttttttattcaaaaaagaatcgaa
gaacctatcatcttctacacactaagtttgatttgatggctacagtgaga
acagcttagttaactttcacttcaacttttcaacttgacagaactcatac
tacatgagcagctgccatacacggagggttagtccagaaggaagactttc
cacaaggcactctccctgaatttcaggttgttcttatagcaacttactgt
gtgtgttgtattgttatcttcagaatattcatgatgatcggaaggtttga
tgaggtcagcaaattgtccgtagttgcaaaatcaataattattttgtaca
gttaacatttgaaccatgattcacagtctaaattcattatccctttctaa
ggccataaaatagaatataactcatctaaatagaacatccttaatagaag
aaagcacttatgacaatgtggggcttctggcccaagcctagctttataca
aaaattctcaggagaacatatggattagtttgccttagataaaaatagta
aataccaaatatttgagcagattttctgtttatgtttacatggtgtgtgt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40209307_40209789
seq2: B6Ng01-225J06.b_45_527 (reverse)

seq1  CACACACACACACACACACACACACAAAACTAAAAGAAAACTTTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACAAAACTAAAAGAAAACTTTTCCAAA  50

seq1  CAACTGTGCTATTCTTGGAGTGCTTTACTCAAACACATCTCACGACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGCTATTCTTGGAGTGCTTTACTCAAACACATCTCACGACATTA  100

seq1  AACCAACTCCTAACTGATCAGAGTCCATGTCCCAATGATTCTAACTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTCCTAACTGATCAGAGTCCATGTCCCAATGATTCTAACTTCTT  150

seq1  ACAGAGGTCCATGTTGTTCTTGGAGTTGGTTTGGTTTGGAGTTTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTCCATGTTGTTCTTGGAGTTGGTTTGGTTTGGAGTTTTTGTTT  200

seq1  TTGTCTCTTGATACCGGGTCCTAGGGGCTCTCAGTAGAGAGCCCAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTGATACCGGGTCCTAGGGGCTCTCAGTAGAGAGCCCAAGCTG  250

seq1  GTTTTGAACTCATGATGTGTCAGCCGCTGTGTTCCCTAAACAGGGATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAACTCATGATGTGTCAGCCGCTGTGTTCCCTAAACAGGGATTAC  300

seq1  TAGATTGCAGACATGTCACCATCCCCAGCTTCCTTAGTTAAATAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCAGACATGTCACCATCCCCAGCTTCCTTAGTTAAATAAGAAAG  350

seq1  GGTCTGTGGGTATCTGTAGCGACTTTGTTACATTTTCTTTGGCTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGGGTATCTGTAGCGACTTTGTTACATTTTCTTTGGCTTATAAA  400

seq1  CACCACTTATCAGTGTTAATAGTCAGCAGTTCCAAACATGTGCAGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTATCAGTGTTAATAGTCAGCAGTTCCAAACATGTGCAGACACA  450

seq1  AAGCATGGCACCTCTTGAAAGGCCATTGAATTC  483
      |||||||||||||||||||||||||||||||||
seq2  AAGCATGGCACCTCTTGAAAGGCCATTGAATTC  483


seq1: chr11_40065592_40066451
seq2: B6Ng01-225J06.g_65_924

seq1  GAATTCCAAGTTATAGCCCTGCCTTAAACCAACTGCATAATAACCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTATAGCCCTGCCTTAAACCAACTGCATAATAACCACTGG  50

seq1  CATTGAACATCATGCATCTATTCCCATACCGAATATCAACTCATTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACATCATGCATCTATTCCCATACCGAATATCAACTCATTTCAAT  100

seq1  GTGGCTCTAGTTTGAAGATGAATGTATTAGAGAGATGACACTATATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTAGTTTGAAGATGAATGTATTAGAGAGATGACACTATATCATG  150

seq1  CTGGGGTCTTGTCACTTGTGGCACTTTTGACCACTAAAAATGGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCTTGTCACTTGTGGCACTTTTGACCACTAAAAATGGAAAGAAA  200

seq1  AAAAGTAAACTTATACTTATTTAGAATAGTGAGAAATTATGAGCCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAACTTATACTTATTTAGAATAGTGAGAAATTATGAGCCTTTTT  250

seq1  ATTTTACTATGTCTCATCTTCTTTTGTTTTTTATTCAAAAAAGAATCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATGTCTCATCTTCTTTTGTTTTTTATTCAAAAAAGAATCGAA  300

seq1  GAACCTATCATCTTCTACACACTAAGTTTGATTTGATGGCTACAGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATCATCTTCTACACACTAAGTTTGATTTGATGGCTACAGTGAGA  350

seq1  ACAGCTTAGTTAACTTTCACTTCAACTTTTCAACTTGACAGAACTCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGTTAACTTTCACTTCAACTTTTCAACTTGACAGAACTCATAC  400

seq1  TACATGAGCAGCTGCCATACACGGAGGGTTAGTCCAGAAGGAAGACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGCAGCTGCCATACACGGAGGGTTAGTCCAGAAGGAAGACTTTC  450

seq1  CACAAGGCACTCTCCCTGAATTTCAGGTTGTTCTTATAGCAACTTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCACTCTCCCTGAATTTCAGGTTGTTCTTATAGCAACTTACTGT  500

seq1  GTGTGTTGTATTGTTATCTTCAGAATATTCATGATGATCGGAAGGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTATTGTTATCTTCAGAATATTCATGATGATCGGAAGGTTTGA  550

seq1  TGAGGTCAGCAAATTGTCCGTAGTTGCAAAATCAATAATTATTTTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGCAAATTGTCCGTAGTTGCAAAATCAATAATTATTTTGTACA  600

seq1  GTTAACATTTGAACCATGATTCACAGTCTAAATTCATTATCCCTTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTGAACCATGATTCACAGTCTAAATTCATTATCCCTTTCTAA  650

seq1  GGCCATAAAATAGAATATAACTCATCTAAATAGAACATCCTTAATAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAAATAGAATATAACTCATCTAAATAGAACATCCTTAATAGAAG  700

seq1  AAAGCACTTATGACAATGTGGGGCTTCTGGCCCAAGCCTAGCTTTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTATGACAATGTGGGGCTTCTGGCCCAAGCCTAGCTTTATACA  750

seq1  AAAATTCTCAGGAGAACATATGGATTAGTTTGCCTTAGATAAAAATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCAGGAGAACATATGGATTAGTTTGCCTTAGATAAAAATAGTA  800

seq1  AATACCAAATATTTGAGCAGATTTTCTGTTTATGTTTACATGGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAATATTTGAGCAGATTTTCTGTTTATGTTTACATGGTGTGTGT  850

seq1  GTGTGTGTGT  860
      ||||||||||
seq2  GTGTGTGTGT  860


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