BAC Information

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BAC

Clone NameB6Ng01-226E16
Chromosome11 (Build37)
Map Location 99,933,918 - 100,092,315
singlet/doubletdoublet
Overlap geneKrt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p
Upstream geneTns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31
Downstream geneLOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226E16.bB6Ng01-226E16.g
ACCGA040270GA040271
length1,144881
definitionB6Ng01-226E16.b B6Ng01-226E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,933,918 - 99,935,053)(100,091,435 - 100,092,315)
sequence
gaattcactcttcagaaaagaaagggcaatcaatgctaatttatttggtg
tgccatttgtgtggtataaatattccactatagtgaagccagtaatgtgt
ctctgagtgaggagttggaaagagatgcataaaatcatctcttgggaggc
aataagaggtagctcccacactcaccttggccctgctttccaaatgtgtg
acagtggatttttttttaacgcatcagtttattctacaaattcacaacgg
gtaatgtatgctatagacctacccttgaaaaagaagaaagaagtgtggcc
atggtgcacatatagcttcctctcaccagtcccaagatgctttcctagag
cccccagggccacgctggactgtgagtctgaaggaatcaggtaggccccg
gaaagggtgaaagcagcttgcgcaaccctggcaatcattctctttcagag
atgtgtgctcctctcctgagccaacccctgcactttctggtgctgccacg
gaccccagaaagatatggctccatgtgagaccactaggaatcattaggag
gaggaagccaatatagagaaggaacacaatacaaatgtaggtccgcttcc
ggactttagtgggaaagacctgtgtctgaactcctgtgtaagcaggtttt
gtcatcctccagggaattgttgccaatgctcagttttctagccattagca
acagcattgcctgggaacttcttagaaatacccattttcaggtcccagcc
tgaacctactatatcaggtcaggaccaacagacagggtttgcacaagtgt
cccaggaacctgtgactcgtggtaagatgggctgacttcttagagcacag
ggaacagttgtacatacaggggtgagaaacatctgggaacagacataatg
tcttctaaacccaatgcaaaacagcttctaagcatgggagttgcaataga
ccagaccctggttcaatgactagagagtctgttcccagtccactttcagg
ccaacagccatcagtatcctggcaagtaaagtccaagaataatcagctct
ctagatggttctgacttttagttgaggctggcaagtggtgacttgagtct
ggagaaagagttgtgagaaaaagacgcctgatgaagagcaaccc
gaattccaagcccatggttggctcaaggactaactagggcattggttaag
gccaggaagcgaagttcaattttgcttaggtatttggcaagttgttgctt
ggaggcacctttaataaaacaatactgaaagaaagcacacacatccatta
gcaaggacaagtttggaacattcgttatacaggatgccacggttccagga
gactaagtttctgtaaatattttgcctcgggtctgcgtccaggcttctgg
cctgtcacgtgtgacactactagagtggatgtagcaataggggtgatggt
agacatgagtgcacgcccatataacctgagctgtgtagagaagtatgtaa
tcagctgtcggaagctttaggagctggcctgctgggcttggggtggctcc
aattgctcccctctgtcctaccttgagtcgtagggttctgggtgatctga
cttcgaatcttttaattttcaatttctagatcattattgccacctaggag
aatgcacagtccactttgcagatcaacaatgccaggctggcagctgatgc
cttcagaaccaagtgagcaaccagaatgctgggcagagggcagagggcag
agggcagagggcagagggcagagggcagagggcagggacaaagtaggtcc
atcttcagctttgacttctctcctcccaggtatgagaatgagctgttctt
gtggcataccgtggagggtgacatcaatggcctgcgcaaggtgctagatg
acctgaccctgtccagagctgatctggagatacagattgaaagcctcaga
gaagagctggccttcctgaagaagaactatgaggaggtgtggctcctgct
gggtttggggatggagggctggtgtggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99933918_99935053
seq2: B6Ng01-226E16.b_48_1191

seq1  GAATTCACTCTTCAGAAAAGAAAGGGCAATCAATGCTAATTTATTTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTCAGAAAAGAAAGGGCAATCAATGCTAATTTATTTGGTG  50

seq1  TGCCATTTGTGTGGTATAAATATTCCACTATAGTGAAGCCAGTAATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTGTGTGGTATAAATATTCCACTATAGTGAAGCCAGTAATGTGT  100

seq1  CTCTGAGTGAGGAGTTGGAAAGAGATGCATAAAATCATCTCTTGGGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTGAGGAGTTGGAAAGAGATGCATAAAATCATCTCTTGGGAGGC  150

seq1  AATAAGAGGTAGCTCCCACACTCACCTTGGCCCTGCTTTCCAAATGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGGTAGCTCCCACACTCACCTTGGCCCTGCTTTCCAAATGTGTG  200

seq1  ACAGTGGATTTTTTTTTAACGCATCAGTTTATTCTACAAATTCACAACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGATTTTTTTTTAACGCATCAGTTTATTCTACAAATTCACAACGG  250

seq1  GTAATGTATGCTATAGACCTACCCTTGAAAAAGAAGAAAGAAGTGTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTATGCTATAGACCTACCCTTGAAAAAGAAGAAAGAAGTGTGGCC  300

seq1  ATGGTGCACATATAGCTTCCTCTCACCAGTCCCAAGATGCTTTCCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCACATATAGCTTCCTCTCACCAGTCCCAAGATGCTTTCCTAGAG  350

seq1  CCCCCAGGGCCACGCTGGACTGTGAGTCTGAAGGAATCAGGTAGGCCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGGGCCACGCTGGACTGTGAGTCTGAAGGAATCAGGTAGGCCCCG  400

seq1  GAAAGGGTGAAAGCAGCTTGCGCAACCCTGGCAATCATTCTCTTTCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTGAAAGCAGCTTGCGCAACCCTGGCAATCATTCTCTTTCAGAG  450

seq1  ATGTGTGCTCCTCTCCTGAGCCAACCCCTGCACTTTCTGGTGCTGCCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTCCTCTCCTGAGCCAACCCCTGCACTTTCTGGTGCTGCCACG  500

seq1  GACCCCAGAAAGATATGGCTCCATGTGAGACCACTAGGAATCATTAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGAAAGATATGGCTCCATGTGAGACCACTAGGAATCATTAGGAG  550

seq1  GAGGAAGCCAATATAGAGAAGGAACACAATACAAATGTAGGTCCGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCCAATATAGAGAAGGAACACAATACAAATGTAGGTCCGCTTCC  600

seq1  GGACTTTAGTGGGAAAGACCTGTGTCTGAACTCCTGTGTAAGCAGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAGTGGGAAAGACCTGTGTCTGAACTCCTGTGTAAGCAGGTTTT  650

seq1  GTCATCCTCCAGGGAATTGTTGCCAATGCTCAGTTTTCTAGCCATTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTCCAGGGAATTGTTGCCAATGCTCAGTTTTCTAGCCATTAGCA  700

seq1  ACAGCATTGCCTGGGAACTTCTTAGAAATACCCATTTTCAGGTCCCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTGCCTGGGAACTTCTTAGAAATACCCATTTTCAGGTCCCAGCC  750

seq1  TGAACCTACTATATCAGGTCAGGACCAACAGACAGGGTTTGCACAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTACTATATCAGGTCAGGACCAACAGACAGGGTTTGCACAAGTGT  800

seq1  CCCAGGAACCTGTGACTCGTGGTAAGATGGGCTGACTTCTTAGAGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAACCTGTGACTCGTGGTAAGATGGGCTGACTTCTTAGAGCACAG  850

seq1  GGAACAGTTGTACATACAGGGGTGAGAAACATCT-GGAACAGACATAATG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAACAGTTGTACATACAGGGGTGAGAAACATCTGGGAACAGACATAATG  900

seq1  TCTTCTAAACCCAATGC-AAACAGCTTCTAAGCATGGGAGTTGCAATAGA  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTCTAAACCCAATGCAAAACAGCTTCTAAGCATGGGAGTTGCAATAGA  950

seq1  CCAGACCCTGG-TCAATGACTAGAGAGTCTGTTCCCAGT-CACTTTCAGG  996
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CCAGACCCTGGTTCAATGACTAGAGAGTCTGTTCCCAGTCCACTTTCAGG  1000

seq1  CCAACAG-CATCAGTATCCTGGCAAGTAAAGTCC-AGA--TATCAGCTCT  1042
      ||||||| |||||||||||||||||||||||||| |||   |||||||||
seq2  CCAACAGCCATCAGTATCCTGGCAAGTAAAGTCCAAGAATAATCAGCTCT  1050

seq1  CTAGATGGTTCTGAC-TTTAGTGGAGGCTGGGAAGTGGTGACTTGGAGGT  1091
      ||||||||||||||| |||||| |||||||| |||||||||||||   ||
seq2  CTAGATGGTTCTGACTTTTAGTTGAGGCTGGCAAGTGGTGACTTG--AGT  1098

seq1  CT-GAGAAAGGAGTGTGAG-AAAAGACGCTGGAGTGAAGAGCAACCC  1136
      || |||||||   |||||| |||||||||  || |||||||||||||
seq2  CTGGAGAAAGAGTTGTGAGAAAAAGACGCCTGA-TGAAGAGCAACCC  1144

seq1: chr11_100091435_100092315
seq2: B6Ng01-226E16.g_68_948 (reverse)

seq1  CTCACCACACCAGCCCTCCATCCCCAAACCCAGCAGGAGCCACACCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACACCAGCCCTCCATCCCCAAACCCAGCAGGAGCCACACCTCCT  50

seq1  CATAGTTCTTCTTCAGGAAGGCCAGCTCTTCTCTGAGGCTTTCAATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCTTCTTCAGGAAGGCCAGCTCTTCTCTGAGGCTTTCAATCTGT  100

seq1  ATCTCCAGATCAGCTCTGGACAGGGTCAGGTCATCTAGCACCTTGCGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGATCAGCTCTGGACAGGGTCAGGTCATCTAGCACCTTGCGCAG  150

seq1  GCCATTGATGTCACCCTCCACGGTATGCCACAAGAACAGCTCATTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGATGTCACCCTCCACGGTATGCCACAAGAACAGCTCATTCTCAT  200

seq1  ACCTGGGAGGAGAGAAGTCAAAGCTGAAGATGGACCTACTTTGTCCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGGAGAGAAGTCAAAGCTGAAGATGGACCTACTTTGTCCCTGC  250

seq1  CCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCC  300

seq1  CAGCATTCTGGTTGCTCACTTGGTTCTGAAGGCATCAGCTGCCAGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTGGTTGCTCACTTGGTTCTGAAGGCATCAGCTGCCAGCCTGG  350

seq1  CATTGTTGATCTGCAAAGTGGACTGTGCATTCTCCTAGGTGGCAATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGATCTGCAAAGTGGACTGTGCATTCTCCTAGGTGGCAATAATG  400

seq1  ATCTAGAAATTGAAAATTAAAAGATTCGAAGTCAGATCACCCAGAACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAATTGAAAATTAAAAGATTCGAAGTCAGATCACCCAGAACCCT  450

seq1  ACGACTCAAGGTAGGACAGAGGGGAGCAATTGGAGCCACCCCAAGCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTCAAGGTAGGACAGAGGGGAGCAATTGGAGCCACCCCAAGCCCAG  500

seq1  CAGGCCAGCTCCTAAAGCTTCCGACAGCTGATTACATACTTCTCTACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCTCCTAAAGCTTCCGACAGCTGATTACATACTTCTCTACACA  550

seq1  GCTCAGGTTATATGGGCGTGCACTCATGTCTACCATCACCCCTATTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTTATATGGGCGTGCACTCATGTCTACCATCACCCCTATTGCTA  600

seq1  CATCCACTCTAGTAGTGTCACACGTGACAGGCCAGAAGCCTGGACGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTCTAGTAGTGTCACACGTGACAGGCCAGAAGCCTGGACGCAGA  650

seq1  CCCGAGGCAAAATATTTACAGAAACTTAGTCTCCTGGAACCGTGGCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGCAAAATATTTACAGAAACTTAGTCTCCTGGAACCGTGGCATCC  700

seq1  TGTATAACGAATGTTCCAAACTTGTCCTTGCTAATGGATGTGTGTGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACGAATGTTCCAAACTTGTCCTTGCTAATGGATGTGTGTGCTTT  750

seq1  CTTTCAGTATTGTTTTATTAAAGGTGCCTCCAAGCAACAACTTGCCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTATTGTTTTATTAAAGGTGCCTCCAAGCAACAACTTGCCAAAT  800

seq1  ACCTAAGCAAAATTGAACTTCGCTTCCTGGCCTTAACCAATGCCCTAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCAAAATTGAACTTCGCTTCCTGGCCTTAACCAATGCCCTAGTT  850

seq1  AGTCCTTGAGCCAACCATGGGCTTGGAATTC  881
      |||||||||||||||||||||||||||||||
seq2  AGTCCTTGAGCCAACCATGGGCTTGGAATTC  881