BAC Information

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BAC

Clone NameB6Ng01-226G15
Chromosome11 (Build37)
Map Location 75,802,024 - 76,003,602
singlet/doubletdoublet
Overlap gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634
Upstream geneSmg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al
Downstream gene2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226G15.bB6Ng01-226G15.g
ACCGA040360GA040361
length2561,136
definitionB6Ng01-226G15.b B6Ng01-226G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,802,024 - 75,802,285)(76,002,477 - 76,003,602)
sequence
aaattctagcaaccacatggtggctcataaccatccataatgagatctga
tgccctcttttggtatgtctgaaaacaactacagtgtacttacatatagt
aaataaataaatctttaaaaaaaaaaaaaaggaaagaaaatatcatatcc
gctccatcattgatttgggaatgttttataaagtctacacttatatttat
atgtgtgtgtatgtatatatatatatatatatatatatatatatatatat
atatat
gaattccatctccaggacccacacggtggagaaagaaccagctctcataa
ctgattcatctacacacatgcttgtacacatgcatgtggtgcacaaataa
atatctttataagttttacaaatagttattcaaatcataaagactggaaa
tagaagaaatacaataggccaatacaaactttgtaatatttaaataactg
gtgctatctgaaaggctaaagactataaagatataggcattattttatag
tgctaatgtaagataaatgtgtattaaaaggatatttatgcttggcgtgt
ggtatgtaactataataccagtacttgggaggttaaggtaaaaggatcac
gaattagaggtcctggggtacgcaccaaaaatattttaaaactctaagta
actagtaacactaattaaatatttcacagaatgttctaactataacacaa
tggaatactatgtagatattaaagagaacaattaatagggtgtgcctctg
tggtacaatgcttgtgtagcaatacacaagaccctgtattccatcttctc
cactgggggtggggagagacagacagacagacagacagacagacaagaga
gacagagagaaaaagacatacacagagagacagacataccagagagacag
acagagaaagagacagagaaacacacacacacacacacacacacacacac
acacagaggcagagagacagagacagacagacactaggacaacaatgcag
agaagggtctccagaatatactaagagggataagatgggtgagaacaaat
tactcaacaataaagcataacttgcaaccatagtggttaaaatgtgctgg
gcacctgctgcggtgtgtaatcacacagggcactgggaagaacatctaac
tgctgacagtcttgcctctacagaaggctgcacacgtactcgttctgagt
gtgcttttgtgaatatgggatagtggggggccttgtgcatttccctccat
ttacctctatgaccttatgagtttttcctatagaaagtgacctcaactgc
cctattcacatcaggtagtgggaaactaagaggcacttggaaagtggaag
gagcctattgtgaagctgcaggatgtctggtaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75802024_75802285
seq2: B6Ng01-226G15.b_43_304

seq1  GAATTCAAATTCTAGCAACCACATGGTGGCTCATAACCATCCATAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTCTAGCAACCACATGGTGGCTCATAACCATCCATAATGAG  50

seq1  ATCTGATGCCCTCTTTTGGTATGTCTGAAAACAACTACAGTGTACTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCCTCTTTTGGTATGTCTGAAAACAACTACAGTGTACTTACA  100

seq1  TATAGTAAATAAATAAATCTTTAAAAAAAAAAAAAAGGAAAGAAAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAAATAAATAAATCTTTAAAAAAAAAAAAAAGGAAAGAAAATATC  150

seq1  ATATCCGCTCCATCATTGATTTGGGAATGTTTTATAAAGTCTACACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCGCTCCATCATTGATTTGGGAATGTTTTATAAAGTCTACACTTAT  200

seq1  ATTTATATGTGTGTGTATGTATATATATATATATATATATATATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGTGTGTGTATGTATATATATATATATATATATATATATATAT  250

seq1  ATATATATATAT  262
      ||||||||||||
seq2  ATATATATATAT  262

seq1: chr11_76002477_76003602
seq2: B6Ng01-226G15.g_63_1198 (reverse)

seq1  TATTTA-CAG-CATCCTGCAGCTTTCACAATTAGCT-CTATCACTTT-CA  46
      |||||| ||| ||||||||||| ||||||||  ||| ||  |||||| ||
seq2  TATTTACCAGACATCCTGCAGC-TTCACAATAGGCTCCTTCCACTTTCCA  49

seq1  GGTGCCTCTTATGTTTCCCCACTA-CTGATGTG-ATA-GGCAG-TGA-GT  91
       |||||||||| |||| ||||||| |||||||| ||| ||||| ||| ||
seq2  AGTGCCTCTTA-GTTT-CCCACTACCTGATGTGAATAGGGCAGTTGAGGT  97

seq1  CAC-TTCTATAGGAAAAACTCATAA-GTCATAGAAGTAAATGGAGGGAAA  139
      ||| ||||||||||||||||||||| |||||||| |||||||||||||||
seq2  CACTTTCTATAGGAAAAACTCATAAGGTCATAGAGGTAAATGGAGGGAAA  147

seq1  TGCACAAGG-CCCCCACTATCCCATATTCACAAAAGCACACTCAGAACGA  188
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGGCCCCCCACTATCCCATATTCACAAAAGCACACTCAGAACGA  197

seq1  GTACGTGTGCAGCCTTCTGTAGAGGCAAGACTGTCAGCAGTTAGATGTTC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTGTGCAGCCTTCTGTAGAGGCAAGACTGTCAGCAGTTAGATGTTC  247

seq1  TTCCCAGTGCCCTGTGTGATTACACACCGCAGCAGGTGCCCAGCACATTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGCCCTGTGTGATTACACACCGCAGCAGGTGCCCAGCACATTT  297

seq1  TAACCACTATGGTTGCAAGTTATGC-TTATTGTTGAGTAATTTGTTCTCA  337
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAACCACTATGGTTGCAAGTTATGCTTTATTGTTGAGTAATTTGTTCTCA  347

seq1  CCCATCTTATCCCTCTTAGTATATTCTGGAGACCCTTCTCTGCATTGTTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTATCCCTCTTAGTATATTCTGGAGACCCTTCTCTGCATTGTTG  397

seq1  TCCTAGTGTCTGTCTGTCTCTGTCTCTCTGCCTCTGTGTGTGTGTGTGTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTCTGTCTGTCTCTGTCTCTCTGCCTCTGTGTGTGTGTGTGTG  447

seq1  TGTGTGTGTGTGTGTGTGTTTCTCTGTCTCTTTCTCTGTCTGTCTCTCTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTTCTCTGTCTCTTTCTCTGTCTGTCTCTCTG  497

seq1  GTATGTCTGTCTCTCTGTGTATGTCTTTTTCTCTCTGTCTCTCTTGTCTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTGTCTCTCTGTGTATGTCTTTTTCTCTCTGTCTCTCTTGTCTG  547

seq1  TCTGTCTGTCTGTCTGTCTGTCTCTCCCCACCCCCAGTGGAGAAGATGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTCTGTCTGTCTCTCCCCACCCCCAGTGGAGAAGATGGA  597

seq1  ATACAGGGTCTTGTGTATTGCTACACAAGCATTGTACCACAGAGGCACAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGTCTTGTGTATTGCTACACAAGCATTGTACCACAGAGGCACAC  647

seq1  CCTATTAATTGTTCTCTTTAATATCTACATAGTATTCCATTGTGTTATAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAATTGTTCTCTTTAATATCTACATAGTATTCCATTGTGTTATAG  697

seq1  TTAGAACATTCTGTGAAATATTTAATTAGTGTTACTAGTTACTTAGAGTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACATTCTGTGAAATATTTAATTAGTGTTACTAGTTACTTAGAGTT  747

seq1  TTAAAATATTTTTGGTGCGTACCCCAGGACCTCTAATTCGTGATCCTTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTTTTGGTGCGTACCCCAGGACCTCTAATTCGTGATCCTTTT  797

seq1  ACCTTAACCTCCCAAGTACTGGTATTATAGTTACATACCACACGCCAAGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACCTCCCAAGTACTGGTATTATAGTTACATACCACACGCCAAGC  847

seq1  ATAAATATCCTTTTAATACACATTTATCTTACATTAGCACTATAAAATAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATCCTTTTAATACACATTTATCTTACATTAGCACTATAAAATAA  897

seq1  TGCCTATATCTTTATAGTCTTTAGCCTTTCAGATAGCACCAGTTATTTAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATATCTTTATAGTCTTTAGCCTTTCAGATAGCACCAGTTATTTAA  947

seq1  ATATTACAAAGTTTGTATTGGCCTATTGTATTTCTTCTATTTCCAGTCTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAAAGTTTGTATTGGCCTATTGTATTTCTTCTATTTCCAGTCTT  997

seq1  TATGATTTGAATAACTATTTGTAAAACTTATAAAGATATTTATTTGTGCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTGAATAACTATTTGTAAAACTTATAAAGATATTTATTTGTGCA  1047

seq1  CCACATGCATGTGTACAAGCATGTGTGTAGATGAATCAGTTATGAGAGCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCATGTGTACAAGCATGTGTGTAGATGAATCAGTTATGAGAGCT  1097

seq1  GGTTCTTTCTCCACCGTGTGGGTCCTGGAGATGGAATTC  1126
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCTCCACCGTGTGGGTCCTGGAGATGGAATTC  1136